Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30181
         (578 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    24   1.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.3  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   7.6  

>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -2

Query: 106 DLRVVLCRGGSDDGSHK 56
           DL+++L  GG ++GS+K
Sbjct: 92  DLKIILSMGGWNEGSYK 108


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 10/68 (14%)
 Frame = +1

Query: 118  IRRQPRWSLQLQFRDFQRHRA----------YETGELKEALDDDNKPHVIVAVRGSTVTR 267
            IR+QP  SL +  RD  R+ A          Y    +   L  +  PH       ST T 
Sbjct: 1353 IRQQPDGSLFI--RDVSRNNAGEYSCHVENDYGQDSVTHQLIVNAPPHAPQIALTSTTTN 1410

Query: 268  TLTANLKP 291
            +LT  LKP
Sbjct: 1411 SLTFKLKP 1418


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -3

Query: 471 SIKLITSNKRMWWXFATQS 415
           S+K  T   ++WW F  ++
Sbjct: 49  SLKQYTCELKLWWEFCQRN 67


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,776
Number of Sequences: 336
Number of extensions: 2095
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14412858
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)