Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30181
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0181 - 12327281-12328620,12330922-12331015,12331079-123311...    29   3.5  
09_02_0454 + 9514706-9515776                                           28   6.2  
02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797     28   6.2  

>04_03_0181 -
           12327281-12328620,12330922-12331015,12331079-12331183,
           12331404-12332592,12333268-12333461
          Length = 973

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/43 (46%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +3

Query: 135 MELTTTISRLPTASCVRNW*AEGGSRRRQ--QASRYCCCAWKY 257
           M LT   S LP   CVR     GGS RRQ    S  CCC + Y
Sbjct: 1   MALTLPPSLLPF--CVRACVRAGGSCRRQWRADSSSCCCCFAY 41


>09_02_0454 + 9514706-9515776
          Length = 356

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -2

Query: 175 DAVGSLEIVVVSSIGAGVEFRPNDLRVVLCRGGS 74
           D VGS  +V V      V     D R VLCRGG+
Sbjct: 187 DHVGSTAVVAVVEESRVVVANCGDSRAVLCRGGA 220


>02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797
          Length = 518

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 157 RDFQRHRAYETGELKEALDDDNKPHVIVAV 246
           R  +  R YE+G L+  L  + +PH+++AV
Sbjct: 267 RAAEEDRRYESGALRRLLRREYRPHLVMAV 296


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,439,847
Number of Sequences: 37544
Number of extensions: 257528
Number of successful extensions: 672
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)