Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30181
         (578 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28910| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_9558| Best HMM Match : DEAD (HMM E-Value=0)                         29   3.6  
SB_27470| Best HMM Match : Baculo_PEP_C (HMM E-Value=2.8)              28   4.8  
SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)                 28   6.3  
SB_57905| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  

>SB_28910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 417

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 80  PPTEDYPKIVRSEFDASPDGAY 145
           PPT+DY +  RS+ D S DG Y
Sbjct: 17  PPTKDYDRRSRSQDDDSDDGCY 38


>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 436

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +1

Query: 196 LKEALDDDNKPHVIVAVRG---STVTRTLTANLKPLR 297
           +K+AL   NKPHV++A  G     +  T T NLK ++
Sbjct: 116 MKQALSLANKPHVVIATPGRLADHIKSTDTLNLKKIQ 152


>SB_27470| Best HMM Match : Baculo_PEP_C (HMM E-Value=2.8)
          Length = 627

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 22/58 (37%), Positives = 30/58 (51%)
 Frame = +1

Query: 217 DNKPHVIVAVRGSTVTRTLTANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSLDR 390
           D  P V+   R  T+ R  T  L  L  ++TRLDT+LRV   L + P     L++L R
Sbjct: 135 DTLPRVVT--RLDTLPRVGT-RLDTLPRAVTRLDTLLRVGTRLDTLPRVVTRLDTLPR 189


>SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
          Length = 756

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 201 GGSRRRQQASRYCCCA 248
           GGSRRR   S++CC A
Sbjct: 97  GGSRRRNSKSKFCCFA 112


>SB_57905| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 205 ALDDDNKPHVI--VAVRGSTVTRTLTANLKPLRTSLTRLDTMLRVNL 339
           ALD+  + H++  V VRGST+    T  L  L  S  ++D   R  L
Sbjct: 10  ALDEHFRSHILHFVVVRGSTIDENSTTGLFTLDLSKRKVDLRNRRKL 56


>SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 833

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 19/89 (21%), Positives = 34/89 (38%)
 Frame = +1

Query: 16  TIKNEIDHRCSSRPCGYRHRCPPYRGLP*DRSV*IRRQPRWSLQLQFRDFQRHRAYETGE 195
           T K      C   PC ++ +CP  R +   +S    +Q     Q   +  QRH  +E   
Sbjct: 198 TCKLTAGSECMDGPCCFKCKCPANRYVYNGKSCGDGKQHHHHKQHHHQQ-QRHHHHEQHH 256

Query: 196 LKEALDDDNKPHVIVAVRGSTVTRTLTAN 282
            ++     +  H+I+   G  +   +  N
Sbjct: 257 HQQQQHHHHHEHIIITNNGIIMNNIIITN 285


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,216,653
Number of Sequences: 59808
Number of extensions: 290486
Number of successful extensions: 824
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)