Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30181
         (578 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    29   1.8  
U41007-12|AAA82272.1|  485|Caenorhabditis elegans Nucleoside tri...    29   2.4  
Z80216-11|CAN99667.1|  984|Caenorhabditis elegans Hypothetical p...    28   5.5  
Z80216-10|CAB02286.4|  949|Caenorhabditis elegans Hypothetical p...    28   5.5  
AL023823-2|CAN99714.1|  984|Caenorhabditis elegans Hypothetical ...    28   5.5  
AL023823-1|CAA19441.4|  949|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z66520-11|CAA91383.1|  269|Caenorhabditis elegans Hypothetical p...    27   7.3  
AL034393-17|CAA22315.1|  503|Caenorhabditis elegans Hypothetical...    27   7.3  
Z50874-7|CAA90767.1|  375|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +1

Query: 1    QERTKTIKNEIDHRCSSRPCGYRHRCPPY-RGLP*DRSV*IRRQPRWSLQLQFRDFQRHR 177
            Q   K +KN++ +R SSR  G  H+ P + R LP D     R+  R + Q +F+  +  R
Sbjct: 2525 QLERKFLKNKVHNRRSSRAPGIHHQRPLHPRWLPTDHET-DRKDSRAASQFRFQHMRSKR 2583


>U41007-12|AAA82272.1|  485|Caenorhabditis elegans Nucleoside
           triphosphatase protein 1 protein.
          Length = 485

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 217 DNKPHVIVAVRGSTVTRTLTANLKPLRTSLTRLDTML 327
           +N  + ++   GS+ TR     LKPL   LT +DT++
Sbjct: 21  NNIKYGVICDAGSSGTRLFVYTLKPLSGGLTNIDTLI 57


>Z80216-11|CAN99667.1|  984|Caenorhabditis elegans Hypothetical
           protein F10G8.8b protein.
          Length = 984

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = +1

Query: 238 VAVRGSTVTRTLTANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSLDR 390
           ++    TVT    A L  LRT L+ L ++LR +LFL +      L N LDR
Sbjct: 599 ISQNSQTVTLQ-RAVLSTLRTQLSALSSLLRSSLFLGAVDLFDSLDNILDR 648


>Z80216-10|CAB02286.4|  949|Caenorhabditis elegans Hypothetical
           protein F10G8.8a protein.
          Length = 949

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = +1

Query: 238 VAVRGSTVTRTLTANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSLDR 390
           ++    TVT    A L  LRT L+ L ++LR +LFL +      L N LDR
Sbjct: 599 ISQNSQTVTLQ-RAVLSTLRTQLSALSSLLRSSLFLGAVDLFDSLDNILDR 648


>AL023823-2|CAN99714.1|  984|Caenorhabditis elegans Hypothetical
           protein F10G8.8b protein.
          Length = 984

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = +1

Query: 238 VAVRGSTVTRTLTANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSLDR 390
           ++    TVT    A L  LRT L+ L ++LR +LFL +      L N LDR
Sbjct: 599 ISQNSQTVTLQ-RAVLSTLRTQLSALSSLLRSSLFLGAVDLFDSLDNILDR 648


>AL023823-1|CAA19441.4|  949|Caenorhabditis elegans Hypothetical
           protein F10G8.8a protein.
          Length = 949

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = +1

Query: 238 VAVRGSTVTRTLTANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSLDR 390
           ++    TVT    A L  LRT L+ L ++LR +LFL +      L N LDR
Sbjct: 599 ISQNSQTVTLQ-RAVLSTLRTQLSALSSLLRSSLFLGAVDLFDSLDNILDR 648


>Z66520-11|CAA91383.1|  269|Caenorhabditis elegans Hypothetical
           protein F49E12.9a protein.
          Length = 269

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 435 WXFATQSCIKASLLKSIQGI*KFSSWRRRPEE*IHPE 325
           W   T S  +    KSI+G   + SW  +P + IHPE
Sbjct: 232 WIHGTDSTFR----KSIEGKRNYMSWSMKPIKQIHPE 264


>AL034393-17|CAA22315.1|  503|Caenorhabditis elegans Hypothetical
           protein Y18D10A.23 protein.
          Length = 503

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +3

Query: 105 SFGL--NSTPAPMELTTTISRLPTASCVRNW*AEGGSRRRQQASRYCCCAWK 254
           +FGL    T A   +   I     A C  NW  +G    R+  S +CC A+K
Sbjct: 441 TFGLLGGLTSAFSAIEALIISEQVAPCYVNWFRDGFKSTREGGSLHCCGAFK 492


>Z50874-7|CAA90767.1|  375|Caenorhabditis elegans Hypothetical
           protein R10E4.6 protein.
          Length = 375

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 240 CCAWKYSYTNTDGKPE 287
           CC WK+ + + DG P+
Sbjct: 288 CCLWKFQFEDIDGVPQ 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,087,224
Number of Sequences: 27780
Number of extensions: 200914
Number of successful extensions: 569
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)