Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30181
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    38   7e-05
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   3.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.0  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   6.7  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              21   6.7  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 37.9 bits (84), Expect = 7e-05
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = +3

Query: 258 SYTNTDGKPETITYFADETGYHAQGESIP 344
           SYT  DG+  +ITY ADE G+  QG  IP
Sbjct: 76  SYTAPDGQQVSITYVADENGFQVQGSHIP 104



 Score = 27.5 bits (58), Expect = 0.10
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 104 IVRSEFDASPDGAYNYNFETSNGI 175
           I   + + + DG Y  NFETSNGI
Sbjct: 29  ITSQQLEVNFDGNYINNFETSNGI 52


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 277 ANLKPLRTSLTRLDTMLRVNLFLRS 351
           A ++P   + T    ++RVNLF+RS
Sbjct: 45  ARIRPSGENATDGPAIVRVNLFVRS 69


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +3

Query: 216 RQQASRYCCCAWKYSYTNT 272
           R     Y CC WK  +T T
Sbjct: 480 RDMIGYYPCCWWKICWTIT 498


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +3

Query: 216 RQQASRYCCCAWKYSYTNT 272
           R     Y CC WK  +T T
Sbjct: 533 RDMIGYYPCCWWKICWTIT 551


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 277 ANLKPLRTSLTRLDTMLRVNLFLRS 351
           A ++P   + T    ++RVN+F+RS
Sbjct: 45  ARIRPSGENATDGPAVVRVNIFVRS 69


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 142 LQLQFRDFQRHRAYETGELKEALDDDNK 225
           L++Q RD Q     E+G  ++ +DD N+
Sbjct: 22  LKIQLRDVQEICKAESGIDQQTVDDINE 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,152
Number of Sequences: 438
Number of extensions: 2556
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)