Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30180
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    28   0.78 
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   1.8  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   4.2  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   4.2  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    25   5.5  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   9.6  

>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 465 RVMVHVVGHRPDRRFFAL*RWSPRSLIVDSCSK 367
           + +V +    PD +FF +  W P  L + SC K
Sbjct: 210 KFLVKLAKALPDAKFFGIFDWDPHGLCIYSCFK 242


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 160 RNSEEARTDRPSQQLRTWNGEWQIVSVNILLNS 258
           RNS    T  P Q   TW+  W I S+N L +S
Sbjct: 426 RNSSLEFTSLPGQSSDTWSIFWNISSLNSLPSS 458



 Score = 26.6 bits (56), Expect = 2.4
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +2

Query: 35  PIRPIVSRITIHWPSFYNVVTGKTLALPNLIALQ-----HIPLSPAGVIAKRPAPIALPN 199
           P  P+ S ++ H   +    +    +L N I+L      ++PLSP    A+ P+PI L +
Sbjct: 172 PRPPLPSSVSSHSSPYSTTSSTSLYSLYNDISLSCSPEPYLPLSPTRSPARTPSPIRLYS 231

Query: 200 SCA 208
           S A
Sbjct: 232 SDA 234


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 402 SPRSLIVDSCSKLEQHSTLSRSILLI 325
           SP +L   +CS L  HST    + L+
Sbjct: 28  SPNNLTEQTCSPLRAHSTFKEPVFLL 53


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 271 VKSAHFLTNRPKSAKSLINQKNRP 342
           VK   FLTN   +  SL+ Q NRP
Sbjct: 675 VKDYDFLTNLNATTLSLLTQSNRP 698


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 459 MVHVVGHRPDRRFFAL 412
           M+++VG +P R FFAL
Sbjct: 274 MIYMVGRKPKRSFFAL 289


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 208 CATVGKGDRCGPLRYYASWRKGDV 137
           C  V  G R GP   Y +W+  DV
Sbjct: 395 CLFVRNGARLGPTSIYHAWKAFDV 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,381,055
Number of Sequences: 5004
Number of extensions: 50032
Number of successful extensions: 104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)