Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30180
(546 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0036 + 3217163-3217584,3217752-3218322 30 1.0
06_03_0705 - 23707987-23708295,23708532-23708573,23709772-237099... 28 4.2
04_04_1586 - 34621945-34623366 28 4.2
06_01_0092 - 775290-775691 28 5.6
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 27 7.4
06_03_0812 + 24847716-24847988,24848123-24848221,24848977-248492... 27 7.4
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420... 27 7.4
11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371 27 9.8
01_06_1061 - 34169469-34169624,34170837-34170938,34171029-341711... 27 9.8
01_06_1012 - 33806190-33807875,33807963-33808331 27 9.8
>09_02_0036 + 3217163-3217584,3217752-3218322
Length = 330
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 59 ITIHWPSFYNVV-TGKTLALPNLIALQH 139
I+ W F N+V +G TL++PN + LQH
Sbjct: 69 ISAGWSRFINLVQSGPTLSIPNYVLLQH 96
>06_03_0705 -
23707987-23708295,23708532-23708573,23709772-23709957,
23710112-23710222,23710337-23710408,23710499-23710747,
23711052-23711135,23711271-23711456,23711540-23711764
Length = 487
Score = 28.3 bits (60), Expect = 4.2
Identities = 20/35 (57%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 122 LIALQHIPLSPAGVIAK-RPAPIALPNSCAPGMAN 223
LIALQ PL P GV K PAP L S APG A+
Sbjct: 349 LIALQPTPL-PFGVQLKPAPAPRELHTSRAPGYAS 382
>04_04_1586 - 34621945-34623366
Length = 473
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 429 YQGDGPLREPSP*SSFLGSRCRKALNRTLKG 521
Y PL +P+ SSF G C A+ RTL G
Sbjct: 165 YAQTDPLFDPAASSSFSGVSCGSAICRTLSG 195
>06_01_0092 - 775290-775691
Length = 133
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = -2
Query: 179 RASSLLRQLAKGGCAARR 126
RA+SLLRQL + GCAA +
Sbjct: 22 RAASLLRQLIEDGCAAAK 39
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 92 VTGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCAP 211
+TG+T+ +P +IA I + P +++P P P+ P
Sbjct: 401 ITGQTIPMPPIIAAPAITVMPPPAPSQQPQPPPPPSHPTP 440
>06_03_0812 +
24847716-24847988,24848123-24848221,24848977-24849229,
24850064-24850174,24850558-24850694,24850821-24850934,
24851025-24851224,24851366-24851560,24851636-24851795
Length = 513
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 516 LGFDLVLYGTSTPKNLIRVMVHVVGHRPDRRF 421
L ++L+ +++ V VH+ G RPDRR+
Sbjct: 22 LAMSVMLFVEKVYMSVVLVGVHLFGRRPDRRY 53
>04_01_0312 +
4206400-4206627,4206661-4207269,4207425-4207902,
4208006-4208297,4209278-4209569,4210013-4210465
Length = 783
Score = 27.5 bits (58), Expect = 7.4
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 71 WPSFYNVV-TGKTLALPNLIALQH 139
W F N+V +G TL+LP + LQH
Sbjct: 133 WSRFTNLVQSGPTLSLPEYVLLQH 156
>11_04_0045 + 12731603-12732487,12732572-12732647,12744290-12745371
Length = 680
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +2
Query: 71 WPSFYNVV-TGKTLALPNLIALQH 139
W F N+V +G TL+LP + LQH
Sbjct: 414 WSRFTNLVQSGLTLSLPEYVLLQH 437
>01_06_1061 -
34169469-34169624,34170837-34170938,34171029-34171180,
34172087-34172153,34172239-34172419,34172655-34172778,
34174775-34174871,34175929-34176331,34176729-34176888,
34177412-34177486,34177714-34177892,34178224-34178303,
34178561-34179322
Length = 845
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = -2
Query: 212 QVRNCWEGRSVRASSLLRQLAKGGCAARRLSWVTPGFS----QSRRCKTTASEL 63
Q+R+CW G + LR G ++ TPG S ++RRC+ +S++
Sbjct: 503 QLRDCWNGELLHGGKFLR----GRRVETDMAPATPGGSSQLVENRRCQLPSSQI 552
>01_06_1012 - 33806190-33807875,33807963-33808331
Length = 684
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -1
Query: 213 PGAQLLGRAIGAGLFAITPAGERGMCCKAIKLGNARVFPVTT 88
PGA +L A+ L I GER K + N R VTT
Sbjct: 136 PGADILAPAVFMFLSGILKYGERTWALKCASMDNLRSGMVTT 177
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,434,185
Number of Sequences: 37544
Number of extensions: 352259
Number of successful extensions: 880
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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