Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30180
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical ...    31   0.72 
AL033514-22|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical...    28   3.8  
AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein.      28   3.8  
Z92833-2|CAB07379.1|  891|Caenorhabditis elegans Hypothetical pr...    28   5.0  

>AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical
           protein Y47D3B.6 protein.
          Length = 269

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 140 IPLSPAGVIAKRPAPIALPNS-CAPGM 217
           IP++PA V+A R  P ALP S C PG+
Sbjct: 145 IPVAPAPVVAGRLIPQALPGSPCEPGV 171


>AL033514-22|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical
            protein Y75B8A.22 protein.
          Length = 1353

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +1

Query: 151  ASWRNSEEARTDR--PSQQLRTWNGEWQ 228
            A W+NS++AR D   P   ++ W  EW+
Sbjct: 1030 AKWKNSDKARMDSVLPIGDIQKWYDEWK 1057


>AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein.
          Length = 1353

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +1

Query: 151  ASWRNSEEARTDR--PSQQLRTWNGEWQ 228
            A W+NS++AR D   P   ++ W  EW+
Sbjct: 1030 AKWKNSDKARMDSVLPIGDIQKWYDEWK 1057


>Z92833-2|CAB07379.1|  891|Caenorhabditis elegans Hypothetical
           protein F38A6.2 protein.
          Length = 891

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 228 LPFAIPGAQLLGRAIGAGLFAITPAGE--RGMCCKAIKLGNARV 103
           L F+     L G++IGA L   T AGE   G   K +K G++RV
Sbjct: 761 LDFSSDSQYLRGQSIGAHLLFWTKAGEICDGTSVKDVKWGSSRV 804


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,353,198
Number of Sequences: 27780
Number of extensions: 287591
Number of successful extensions: 648
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)