Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30178
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058... 36 0.025
07_03_1245 + 25154586-25155040,25155519-25155604,25155690-25155733 34 0.057
08_02_0110 + 12650328-12650552,12650827-12651423,12651480-126518... 30 1.2
05_05_0319 - 24080914-24080929,24082320-24082621,24082666-240827... 29 2.1
08_02_0520 - 18121561-18121821,18122216-18122470,18122560-181227... 29 2.8
07_03_0635 + 20151861-20152249,20152589-20152709,20154914-201549... 29 2.8
04_01_0537 + 6970887-6971319,6971428-6971540,6971552-6972016 28 3.7
01_06_1677 + 39092268-39092306,39092395-39092447,39094259-390943... 28 3.7
07_01_0064 + 463358-464341 27 6.5
07_01_0058 + 438157-438660 27 6.5
10_08_0654 - 19616426-19616656,19617046-19617249,19617654-196178... 27 8.7
05_05_0362 + 24415257-24415481,24415585-24415835,24416659-244167... 27 8.7
04_04_1385 - 33157557-33157655,33157752-33158201,33158864-331590... 27 8.7
04_01_0548 + 7103540-7103972,7104081-7104667 27 8.7
>10_07_0172 +
13804803-13805293,13805423-13805537,13805766-13805831,
13805921-13806009,13806103-13806193,13806312-13806458,
13806575-13806667,13806745-13806846,13806957-13807541,
13808523-13808813,13808866-13808937
Length = 713
Score = 35.5 bits (78), Expect = 0.025
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +3
Query: 249 DKQLNEKNPYTTFGINKFA---DYTPEEQQSRLGLRLPAKKT*VLRLQSIGMLFQTK*MY 419
DK+ P T G ++FA D TPE+ G+ P + +RLQ + F+T+
Sbjct: 94 DKESCSSKPNATAGASRFALAGDQTPEDSPVIAGVASPKHQAAAVRLQKVYKSFRTRRQL 153
Query: 420 CDC 428
DC
Sbjct: 154 ADC 156
>07_03_1245 + 25154586-25155040,25155519-25155604,25155690-25155733
Length = 194
Score = 34.3 bits (75), Expect = 0.057
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +1
Query: 88 VVMASSAETDTPRHYDLNQA--KELFEIFVKEHNREYKDDADRELHYQSFKKHLAEIN 255
+V A +A+TD + +++ K FE ++KEH R Y ++ Y++FKK + IN
Sbjct: 43 IVDADAADTDEDGNNAVDEPAMKAKFEDWMKEHGRIYITKKEKAHRYENFKKAMKGIN 100
>08_02_0110 +
12650328-12650552,12650827-12651423,12651480-12651857,
12651997-12652218,12652407-12652483,12652553-12652631,
12652920-12653105
Length = 587
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = +1
Query: 31 LLIHCAKMNFVSVALLIATVVMASSAETDTPRH-YDLNQAK--ELFEIFVKEHNREY 192
L+IHC +MN+V + V + P H Y L++ K E + E + Y
Sbjct: 410 LIIHCGRMNYVEAEAMKKPVAYLNPCRISKPNHTYTLDEKKLPEHIKAMTPEERKAY 466
>05_05_0319 -
24080914-24080929,24082320-24082621,24082666-24082787,
24083189-24083534
Length = 261
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 148 KELFEIFVKEHNREYKDDADRELHYQSFKK 237
K F+ ++KEHNR Y + ++ Y+ FK+
Sbjct: 183 KARFQDWMKEHNRSYSTEEEKARCYEIFKE 212
>08_02_0520 -
18121561-18121821,18122216-18122470,18122560-18122731,
18122824-18123105,18123159-18123292,18123425-18123508,
18123611-18123901,18123982-18124314,18124620-18124750,
18124826-18124930,18125011-18125167,18125248-18125351,
18125442-18125602,18125800-18126116,18126369-18126650,
18127011-18127312,18127609-18127699,18127771-18127824,
18128110-18128186,18128279-18128438,18128545-18128629,
18129059-18129367,18129514-18129890
Length = 1507
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 508 FFXXXSXFFNGSNSLLIIFDKF*TFYKQSQYIYF 407
FF + FNG + L + K F+KQ Y++F
Sbjct: 612 FFAMVAHMFNGFSELAMATIKLPVFFKQRDYLFF 645
>07_03_0635 +
20151861-20152249,20152589-20152709,20154914-20154996,
20155819-20155903,20155987-20156277,20156555-20156645,
20157380-20158280,20158401-20158561,20158759-20158862,
20159040-20159205,20159283-20159378,20159694-20159800,
20160443-20160775,20161393-20161599,20161774-20161857,
20162887-20163020,20163166-20163393,20163541-20163712,
20164301-20164555,20164647-20164919
Length = 1426
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 484 FNGSNSLLIIFDKF*TFYKQSQYIYF 407
FNG L + DK FYKQ +++F
Sbjct: 589 FNGFGELQLTIDKLPIFYKQRDFLFF 614
>04_01_0537 + 6970887-6971319,6971428-6971540,6971552-6972016
Length = 336
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +1
Query: 160 EIFVKEHNREYKDDADRELHYQSFKKHLAEINN 258
E ++ ++ R YKDDA++ ++ FK ++A I +
Sbjct: 38 ERWMAQYGRMYKDDAEKARRFEVFKANVAFIES 70
>01_06_1677 +
39092268-39092306,39092395-39092447,39094259-39094350,
39094435-39094646,39095196-39095207
Length = 135
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 133 DLNQA-KELFEIFVKEHNREYKDDADRELHYQSFK 234
D QA K F+ ++ + NR YKD+A++ ++ FK
Sbjct: 85 DEEQALKVRFQEWMNKFNRNYKDEAEKAYRFEVFK 119
>07_01_0064 + 463358-464341
Length = 327
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 79 IATVVMASSAETDTPRHYDLNQAKELFEIFVKEHNREYKDDADRELHYQSFKKHL 243
+A V MAS A T RH + ++ EH R YKD A++ ++ FK ++
Sbjct: 1 MAKVTMASRAGTMEARH----------DKWMAEHGRTYKDAAEKARRFRVFKANV 45
>07_01_0058 + 438157-438660
Length = 167
Score = 27.5 bits (58), Expect = 6.5
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +1
Query: 166 FVKEHNREYKDDADRELHYQSFK 234
++ + NREYKD+A++ ++ FK
Sbjct: 88 WMNKFNREYKDEAEKAYRFEIFK 110
>10_08_0654 -
19616426-19616656,19617046-19617249,19617654-19617824,
19619617-19620411
Length = 466
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -2
Query: 414 FISFGIAFR*TEVAELMSS*QAASIPTCSAVPQEYNQQI 298
F+++G + R TE ++ +S A+ P C+ V NQ+I
Sbjct: 222 FVAWGGSIRRTEGFKMSNSLNASRFPFCAVVMASTNQRI 260
>05_05_0362 +
24415257-24415481,24415585-24415835,24416659-24416755,
24417272-24417820,24418029-24418482,24418747-24418860,
24418940-24419023,24419499-24420067
Length = 780
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 352 LLRRHKFCDFSLSECYSKRNKCIVTACKMFKIYRI 456
L R + DFS+ C S N VT K K Y +
Sbjct: 716 LAREKEINDFSIKRCISVLNSMDVTKAKKVKAYTV 750
>04_04_1385 -
33157557-33157655,33157752-33158201,33158864-33159004,
33159058-33159329,33160371-33160821
Length = 470
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/68 (22%), Positives = 30/68 (44%)
Frame = +1
Query: 52 MNFVSVALLIATVVMASSAETDTPRHYDLNQAKELFEIFVKEHNREYKDDADRELHYQSF 231
M + ALL+ + A+ + +A+ L+ + EH + Y + E Y +F
Sbjct: 5 MALAAAALLLLLSLAAADMSIVSYGERSEEEARRLYAEWKAEHGKSYNAVGEEERRYAAF 64
Query: 232 KKHLAEIN 255
+ +L I+
Sbjct: 65 RDNLRYID 72
>04_01_0548 + 7103540-7103972,7104081-7104667
Length = 339
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = +1
Query: 160 EIFVKEHNREYKDDADRELHYQSFKKHLAEINN 258
E ++ ++ R Y+DDA++ ++ FK ++A I +
Sbjct: 38 ERWMAQYGRVYRDDAEKARRFEVFKANVAFIES 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,425,499
Number of Sequences: 37544
Number of extensions: 204758
Number of successful extensions: 529
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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