Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30178
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   0.79 
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   3.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   3.2  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   7.3  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   9.7  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 24.2 bits (50), Expect = 0.79
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 66  CGVVNSHSSNGVLGG 110
           CGV N H   G+LGG
Sbjct: 329 CGVHNLHGMPGILGG 343


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 124 RHYDLNQAKELFEIFV-KEHNREYKDDADRELHYQSFKKHLAE 249
           RH D N  +   E    ++ +REYK D   +  +   +KHL E
Sbjct: 238 RHEDRNSYRNDGERSCSRDRSREYKKDRRYDQLHNVEEKHLRE 280


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 13/47 (27%), Positives = 19/47 (40%)
 Frame = +2

Query: 149 KNCSKFSSKNITGNTRMMPTESCIINHSRNTWQR*TIEREESIYYVW 289
           K C +F      G  ++ P +  I+   R  W     ER + I Y W
Sbjct: 46  KECEQFLGPVGFGGVQVSPVQENIVIDKRPWW-----ERYQPISYKW 87


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 158 SKFSSKNITGNTRMMPTESCI 220
           +K+    IT + R++PT +CI
Sbjct: 378 AKYLRACITESLRLIPTTTCI 398


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 75  VNSHSSNGVLGG 110
           V+SHSSNG+  G
Sbjct: 76  VSSHSSNGIHTG 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,527
Number of Sequences: 438
Number of extensions: 2653
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)