Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30176
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    47   1e-06
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    29   0.52 
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   2.8  
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   2.8  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   3.7  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    25   4.9  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    25   4.9  
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo...    25   8.5  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 47.2 bits (107), Expect = 1e-06
 Identities = 21/41 (51%), Positives = 26/41 (63%)
 Frame = +3

Query: 132 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHV 254
           K+ ID T    D I DV  FEKYL + +KV+GKT NL + V
Sbjct: 11  KYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSV 51



 Score = 35.5 bits (78), Expect = 0.005
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 257 VARD-KTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHDAYELRYF 415
           V+R+  +K+A+ A I FS                  DWLRVV++    YELRY+
Sbjct: 53  VSREGSSKIAVIAHIDFSGRYLKYLTKKFLKKHSLRDWLRVVSTKKGVYELRYY 106


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 116 LDAFAADFATLHSFFASLLVQLGFLS 39
           +D +  DFAT H+ + + L  +GFLS
Sbjct: 87  IDLYILDFATQHNLYVASLRNMGFLS 112


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 177  DVGNFEKYLKEHVKVEGKTNNLSNHVSSPG 266
            + GN +KY + ++KV GK ++   H  +PG
Sbjct: 955  EAGNLKKYDQPNLKVSGKNDSFVTH-HTPG 983


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
 Frame = +3

Query: 174 LDVGNFEKYLKEHVKVEGKTN----NLSNHVSS---PGIRRKSLSPQTFLFQR 311
           LD  +F K   +H++V+   +    + S  +S    P +RRKSL P+  +FQR
Sbjct: 111 LDQRSFSKTPNKHIEVKNLKDLCSPSHSGRISKSLCPVLRRKSLLPKPKMFQR 163


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 132 KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL 242
           K   DC +  + ++  + N +K + +HV  E K + L
Sbjct: 819 KLKTDCENLTQQNMTLIDNVQKLMHKHVNQESKVSEL 855


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 199 YFSKLPTSKILSSAGCVQSIVNFKLIFR-LMPLPRILPPFTPFL 71
           ++ +    ++    G +++I    ++F  L  L RI+ PFTPF+
Sbjct: 729 WYIRFNRRRLKGEDGEIETINALNVLFEVLFTLVRIMGPFTPFI 772


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -2

Query: 327 KYFRYLFEKGMSAVIATFVLSL 262
           K+FRY+F   ++ ++  FVL++
Sbjct: 198 KWFRYIFRVSVAVILLDFVLNM 219


>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
           element|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1333

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -3

Query: 401 RKRHERRPPLEASHANCSS*GNVLLNTSGTSLKKECLR**RLSSYPWRRNVI 246
           RKR+E     E     CS    +   T    + +E +R  +L + PW ++VI
Sbjct: 248 RKRYEMVLQAELPDFKCSIPCLIDTGTQANIITEETVRAHKLPTRPWSKSVI 299


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,712,599
Number of Sequences: 5004
Number of extensions: 30002
Number of successful extensions: 98
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)