Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30176
         (505 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33983| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.019
SB_2161| Best HMM Match : Ribosomal_L22e (HMM E-Value=1.1e-05)         36   0.019
SB_44986| Best HMM Match : Ion_trans_2 (HMM E-Value=6.9e-15)           30   0.94 
SB_58789| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_28575| Best HMM Match : Peptidase_M1 (HMM E-Value=2e-07)            28   3.8  
SB_36463| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  
SB_14304| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_33983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 50

 Score = 35.9 bits (79), Expect = 0.019
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +2

Query: 362 DWLRVVASAHDAYELRYF 415
           DWLRVVA+ H +YELRYF
Sbjct: 18  DWLRVVAADHTSYELRYF 35


>SB_2161| Best HMM Match : Ribosomal_L22e (HMM E-Value=1.1e-05)
          Length = 50

 Score = 35.9 bits (79), Expect = 0.019
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +2

Query: 362 DWLRVVASAHDAYELRYF 415
           DWLRVVA+ H +YELRYF
Sbjct: 18  DWLRVVAADHTSYELRYF 35


>SB_44986| Best HMM Match : Ion_trans_2 (HMM E-Value=6.9e-15)
          Length = 711

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 141 IDCTHPAEDSILDVGNFEKYL--KEHVKVEGKTNNLSNHV 254
           + C H +E S L   + + Y   K   KVE   NNLSNHV
Sbjct: 376 LPCVHSSETSELFAQDLKMYYVQKAFSKVEPMLNNLSNHV 415


>SB_58789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 333 FVKYFRYLFEKGMSAVIATFVLSLATKRDCLGYLFCPQL 217
           F+  +RY+   G+S ++     + AT   C+G LF P+L
Sbjct: 755 FIPTYRYVV--GISRILVVVFTAFATAFSCMGCLFIPKL 791


>SB_28575| Best HMM Match : Peptidase_M1 (HMM E-Value=2e-07)
          Length = 287

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 192 EKYLKEHVKVEGKTNNLSNHVSSPGIRRKS 281
           +KYLKEHV    +T++L N ++    RR S
Sbjct: 167 KKYLKEHVYGSAQTDDLWNALTEESCRRDS 196


>SB_36463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -1

Query: 64  FWCNWAFLATGFFVTAIVA 8
           FW N+AFL     VTAIVA
Sbjct: 64  FWVNFAFLMLNLCVTAIVA 82


>SB_14304| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1219

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 8    CHNGSNKETGG*ESPIAPEDWQKRSEGW 91
            CH  +  +    ESP+  ++WQK++ G+
Sbjct: 1183 CHRQTAGKMNDNESPVEDDEWQKQNGGY 1210


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,914,172
Number of Sequences: 59808
Number of extensions: 222612
Number of successful extensions: 596
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)