Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30176
         (505 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) simi...    51   5e-07
At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C) ribo...    49   2e-06
At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B) id...    48   4e-06
At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B) id...    48   4e-06
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran...    27   5.4  
At2g01710.1 68415.m00099 DNAJ heat shock N-terminal domain-conta...    27   5.4  
At1g04120.1 68414.m00401 ABC transporter family protein Strong s...    27   5.4  
At3g56700.1 68416.m06307 male sterility protein, putative simila...    27   7.2  
At5g12150.1 68418.m01426 pleckstrin homology (PH) domain-contain...    27   9.5  
At2g12100.1 68415.m01300 Ulp1 protease family protein contains P...    27   9.5  
At1g45090.1 68414.m05169 Ulp1 protease family protein similar to...    27   9.5  

>At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) similar
           to ribosomal protein L22 GI:710294 from [Rattus
           norvegicus]
          Length = 127

 Score = 50.8 bits (116), Expect = 5e-07
 Identities = 20/43 (46%), Positives = 29/43 (67%)
 Frame = +3

Query: 129 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVS 257
           + F IDC+ P +D+IL++   EK+L+E +KV GK   L N VS
Sbjct: 18  VSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVS 60



 Score = 31.1 bits (67), Expect = 0.44
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +2

Query: 257 VARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 415
           + R   K+ + A+  FS                  DWLRV+AS  D   YE+RYF
Sbjct: 61  ITRYNGKINVNANSNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYF 115


>At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C)
           ribosomal protein L22 (cytosolic), Rattus norvegicus,
           PIR:S52084
          Length = 124

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 19/43 (44%), Positives = 30/43 (69%)
 Frame = +3

Query: 129 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVS 257
           + FTIDC+ P +D I+++ + EK+L+E +KV GK   L + VS
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVS 58



 Score = 40.3 bits (90), Expect = 7e-04
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 257 VARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 415
           + R+K+K+ +TAD  FS                  DWLRV+A+  D   YELRYF
Sbjct: 59  ITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYF 113


>At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B)
           identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
           [Arabidopsis thaliana]
          Length = 124

 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 18/43 (41%), Positives = 30/43 (69%)
 Frame = +3

Query: 129 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVS 257
           + FTIDC+ P +D I+++ + EK+L+E +KV GK   L + V+
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVT 58



 Score = 40.3 bits (90), Expect = 7e-04
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 257 VARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 415
           + R+K+K+ +TAD  FS                  DWLRV+A+  D   YELRYF
Sbjct: 59  ITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYF 113


>At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B)
           identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
           [Arabidopsis thaliana]
          Length = 124

 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 18/43 (41%), Positives = 30/43 (69%)
 Frame = +3

Query: 129 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVS 257
           + FTIDC+ P +D I+++ + EK+L+E +KV GK   L + V+
Sbjct: 16  VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVT 58



 Score = 40.3 bits (90), Expect = 7e-04
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 257 VARDKTKVAITADIPFSXXXXXXXXXXXXXXXXXXDWLRVVASAHD--AYELRYF 415
           + R+K+K+ +TAD  FS                  DWLRV+A+  D   YELRYF
Sbjct: 59  ITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYF 113


>At3g60970.1 68416.m06823 ABC transporter family protein ABC
           transporter-like proteins
          Length = 1037

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 232 VLPSTLTCSFKYFSKLPTSKILSSAGCVQSIVNFKLIFRL 113
           +L S       YF   PT +IL+ A   QS+++ ++  +L
Sbjct: 560 MLCSIFRAPMSYFDSTPTGRILNRASTDQSVLDLEMAVKL 599


>At2g01710.1 68415.m00099 DNAJ heat shock N-terminal
           domain-containing protein simlar to AHM1 [Triticum
           aestivum] GI:6691467; contains Pfam profile PF00226:
           DnaJ domain
          Length = 311

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 136 NFKLIFRLMPLPRILPPFTPFLPVFWCNWAFLATGF 29
           N +  F    +P+ LPP  P    ++C W F   GF
Sbjct: 192 NCQRAFHAASIPQ-LPPLIPGKDEYYCCWGFFPMGF 226


>At1g04120.1 68414.m00401 ABC transporter family protein Strong
            similarity to MRP-like ABC transporter gb|U92650 from A.
            thaliana and canalicular multi-drug resistance protein
            gb|L49379 from Rattus norvegicus
          Length = 1514

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 244  LRLFVLPSTLTCSFKYFSKLPTSKILSSAGCVQSIVNFKLIFRL 113
            L L +L S       +F   P  +IL+     QS+V+  + FRL
Sbjct: 1022 LFLNMLRSVFRAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRL 1065


>At3g56700.1 68416.m06307 male sterility protein, putative similar
           to SP|Q08891 Male sterility protein 2 {Arabidopsis
           thaliana}; contains Pfam profile PF03015: Male sterility
           protein
          Length = 527

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 147 CTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHV 254
           C  P E++++D+    +++K H  +EG T+ LSN +
Sbjct: 402 CDFPLEETVIDL----EHMKIHSSLEGFTSALSNTI 433


>At5g12150.1 68418.m01426 pleckstrin homology (PH) domain-containing
           protein / RhoGAP domain-containing protein weak
           similarity to glucocorticoid receptor DNA binding factor
           1 [Canis familiaris] GI:23266717; contains Pfam profiles
           PF00169: PH domain, PF00620: RhoGAP domain
          Length = 827

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 433 AVSVDVEVAQFVSVMS-GGHHSKPVTQIVLLEVT 335
           A S+ + + ++  VM  G HH  P T   L+E+T
Sbjct: 754 AASLGIPMEEYSPVMDYGRHHHPPATSAALMELT 787


>At2g12100.1 68415.m01300 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At5g28270, At2g05450,
           At1g45090, At2g16180, At2g06750
          Length = 1224

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 150 THPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVSS 260
           +H  E  I D GNFE+ L + +  +     +S+ VSS
Sbjct: 686 SHQPEHGIPDGGNFEQLLPDPILSDPALEKMSDDVSS 722


>At1g45090.1 68414.m05169 Ulp1 protease family protein similar to
           At5g28270, At2g12100, At2g05450, At2g16180, At2g06750;
           contains Pfam profile PF02902: Ulp1 protease family,
           C-terminal catalytic domain
          Length = 1210

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 150 THPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVSS 260
           +H  E  I D GNFE+ L + +  +     +S+ VSS
Sbjct: 677 SHQPEHGIPDGGNFEQLLPDPILSDPALEKMSDDVSS 713


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,944,218
Number of Sequences: 28952
Number of extensions: 158457
Number of successful extensions: 446
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)