Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30173
(619 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q88WJ7 Cluster: UPF0122 protein lp_1634; n=43; Bacilli|... 39 0.083
UniRef50_Q2JU59 Cluster: ISSoc4, transposase orfAB; n=18; Synech... 35 1.4
UniRef50_A5ZEP0 Cluster: Putative uncharacterized protein; n=2; ... 34 3.1
UniRef50_Q877K7 Cluster: ISPsy8, transposase OrfA; n=2; Pseudomo... 33 5.5
UniRef50_O05290 Cluster: Probable UPF0122 protein; n=3; Mycoplas... 33 5.5
UniRef50_Q0AUU0 Cluster: Transposase; n=1; Syntrophomonas wolfei... 33 7.2
UniRef50_A0AGR8 Cluster: Complete genome; n=1; Listeria welshime... 33 7.2
UniRef50_A5Z9T7 Cluster: Putative uncharacterized protein; n=2; ... 32 9.5
>UniRef50_Q88WJ7 Cluster: UPF0122 protein lp_1634; n=43;
Bacilli|Rep: UPF0122 protein lp_1634 - Lactobacillus
plantarum
Length = 115
Score = 39.1 bits (87), Expect = 0.083
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Frame = +2
Query: 71 YKRYDPLIL---KTAIEAYEIGNRSLVEIAKQFNISKSVLHRHVTRTMKSQGGHKKRLHN 241
++ Y+PL+ K I+ Y + SL EIA +F++S+ ++ ++ RT K G++ +LH
Sbjct: 13 FEFYEPLLTNKQKAYIQLYYADDYSLGEIAAEFSVSRQAVYDNIKRTEKILEGYEAKLH- 71
Query: 242 KY*YFSEWGYPLDS 283
Y F E + +D+
Sbjct: 72 LYHDFVERNHEVDA 85
>UniRef50_Q2JU59 Cluster: ISSoc4, transposase orfAB; n=18;
Synechococcus|Rep: ISSoc4, transposase orfAB -
Synechococcus sp. (strain JA-3-3Ab) (Cyanobacteria
bacteriumYellowstone A-Prime)
Length = 315
Score = 35.1 bits (77), Expect = 1.4
Identities = 15/46 (32%), Positives = 28/46 (60%)
Frame = +2
Query: 107 IEAYEIGNRSLVEIAKQFNISKSVLHRHVTRTMKSQGGHKKRLHNK 244
+ AY+ GN S+ ++AK+F ++K +HR V + ++Q K+ K
Sbjct: 13 VAAYQAGNTSIRQVAKRFMVTKRTVHRWVRQYQQTQDLAPKKAGTK 58
>UniRef50_A5ZEP0 Cluster: Putative uncharacterized protein; n=2;
Bacteroides|Rep: Putative uncharacterized protein -
Bacteroides caccae ATCC 43185
Length = 169
Score = 33.9 bits (74), Expect = 3.1
Identities = 16/59 (27%), Positives = 33/59 (55%)
Frame = +2
Query: 32 DMPSVCVSKSAKPYKRYDPLILKTAIEAYEIGNRSLVEIAKQFNISKSVLHRHVTRTMK 208
D +C+ K+ K Y+ IL EA I N+ E+A++ N+S + +H+++ + ++
Sbjct: 100 DSRILCIRKAMKKLTPYNYYIL----EACYIHNKKYKEVAEELNVSVAAIHKNIVKALR 154
>UniRef50_Q877K7 Cluster: ISPsy8, transposase OrfA; n=2; Pseudomonas
syringae group|Rep: ISPsy8, transposase OrfA -
Pseudomonas syringae pv. tomato
Length = 171
Score = 33.1 bits (72), Expect = 5.5
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 77 RYDPLILKTAIEAYEIGNRSLVEIAKQFNISKSVLHRHVTRTMKSQG--GHKK 229
+Y T ++AY GN +++ QF+I S+L R V KS G GH+K
Sbjct: 3 KYSEQFKLTVVKAYLAGNIGFRKVSSQFSIDSSLLRRWVA-NYKSHGHTGHRK 54
>UniRef50_O05290 Cluster: Probable UPF0122 protein; n=3;
Mycoplasma|Rep: Probable UPF0122 protein - Mycoplasma
mycoides
Length = 113
Score = 33.1 bits (72), Expect = 5.5
Identities = 22/65 (33%), Positives = 34/65 (52%)
Frame = +2
Query: 50 VSKSAKPYKRYDPLILKTAIEAYEIGNRSLVEIAKQFNISKSVLHRHVTRTMKSQGGHKK 229
+S+ K YK K E Y + SL EIA +FNISK+ ++ +++T K +
Sbjct: 14 LSELFKIYKELLTDKQKQYFELYIDEDLSLSEIADEFNISKTAVYDSISKTSKLLFSLET 73
Query: 230 RLHNK 244
+LH K
Sbjct: 74 KLHLK 78
>UniRef50_Q0AUU0 Cluster: Transposase; n=1; Syntrophomonas wolfei
subsp. wolfei str. Goettingen|Rep: Transposase -
Syntrophomonas wolfei subsp. wolfei (strain Goettingen)
Length = 92
Score = 32.7 bits (71), Expect = 7.2
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 74 KRYDPLILKTAIEAYEIGNRSLVEIAKQFNISKSVLHRHVTRTMKSQGGH 223
K Y+ K ++ Y GN S E+++Q++I+ S + + V R +Q H
Sbjct: 4 KHYEENFKKQIVKIYNQGNHSYRELSEQYDIAPSTVRQWVMRYNNTQSFH 53
>UniRef50_A0AGR8 Cluster: Complete genome; n=1; Listeria welshimeri
serovar 6b str. SLCC5334|Rep: Complete genome - Listeria
welshimeri serovar 6b (strain ATCC 35897 / DSM 20650
/SLCC5334)
Length = 188
Score = 32.7 bits (71), Expect = 7.2
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +2
Query: 56 KSAKPYKRYDPLILKTAIEAYEIGNRSLVEIAKQFNISKSVLHRHV 193
K +P K+ D +K + Y NR++ +IAK N+S+ +++H+
Sbjct: 136 KLGRPQKQID---IKKIVTLYTTDNRTVTDIAKLMNLSRPTIYKHL 178
>UniRef50_A5Z9T7 Cluster: Putative uncharacterized protein; n=2;
Eubacterium ventriosum ATCC 27560|Rep: Putative
uncharacterized protein - Eubacterium ventriosum ATCC
27560
Length = 182
Score = 32.3 bits (70), Expect = 9.5
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +2
Query: 77 RYDPLILKTAIEAYEIGNRSLVEIAKQFNISKS 175
RY K ++AY +G++S+ ++A +FN++KS
Sbjct: 4 RYSEDFKKEVVKAYMVGDKSIHQLAVEFNVAKS 36
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 504,013,650
Number of Sequences: 1657284
Number of extensions: 8474513
Number of successful extensions: 14148
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14146
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44807090004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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