Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30173
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   8.8  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   8.8  
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    25   8.8  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -2

Query: 243 LLCNLFLCPP*DFIVLVTCLCKTDLLILNCLAISTKDLFP 124
           LLC+   CPP    V   CLC  + +   C  IS  +  P
Sbjct: 296 LLCHPGPCPPCTATVEKFCLCGKESIHARCSNISKVNTEP 335


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 168 LILNCLAISTKDLFPIS*ASIAVFNIKGSYLL*GFALFDTQTLGI 34
           L+  C   S + +F +S       N K +Y   GFA+    TLG+
Sbjct: 423 LLNRCTLSSIQAVFLLSLYHFLTGNFKCAYSYLGFAIHSAHTLGL 467


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
 Frame = -1

Query: 325 NSXQKSHYYY-----E*VIRIKWISPL*KILIFIM*SFFVSTLRFHCSCYMSVQNRLTYI 161
           N  +K++ Y+     E + R+K ++P    L+  +   F   +   CS YM++Q  + Y+
Sbjct: 239 NKSEKTNKYHTEWNLEHIPRLKLVTPA---LMRPIRMLFTQPIVILCSTYMAIQYGILYL 295

Query: 160 KLLSY 146
            L +Y
Sbjct: 296 VLTTY 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,191,740
Number of Sequences: 5004
Number of extensions: 39069
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)