Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30173
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0366 - 16832018-16832371,16832746-16834752,16835109-16835480     28   6.8  
08_01_0120 - 957365-957552,957642-957780,957847-957970,958398-95...    28   6.8  

>11_04_0366 - 16832018-16832371,16832746-16834752,16835109-16835480
          Length = 910

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 204 IVLVTCLCKTDLLILNCLAISTKDLFP 124
           I LV  LC++ L +LNC +++T   FP
Sbjct: 784 IRLVLRLCRSSLKLLNCPSLATVSQFP 810


>08_01_0120 -
           957365-957552,957642-957780,957847-957970,958398-958486
          Length = 179

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +2

Query: 50  VSKSAKPYKRYDPLILKTAIEAYEIGNRSLVEIAK 154
           +S SA PYKR  P  LKTA  A ++G  S + +++
Sbjct: 33  ISSSALPYKRTPPSWLKTA--ASDVGAFSFLSLSR 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,717,574
Number of Sequences: 37544
Number of extensions: 203417
Number of successful extensions: 317
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)