Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30170
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    27   2.1  
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    27   2.8  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    26   4.9  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    25   6.5  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    25   6.5  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   8.6  

>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = +2

Query: 356 HPKE-LHGRDVRDLPRHHTVGSARHV--PRVLLETQRAVLVEETTEIVRRLFAMNWNAPX 526
           H +E L    V + P    VG   +V  PR L  +   V  E  +E V+R F  NW    
Sbjct: 68  HKREILEAVTVIETPPMVVVGVVGYVETPRGL-RSLTTVWAEHLSEEVKRRFYKNWFKSK 126

Query: 527 KGAYTNRFKK 556
           K A+T   KK
Sbjct: 127 KKAFTKYAKK 136


>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = +2

Query: 356 HPKE-LHGRDVRDLPRHHTVGSARHV--PRVLLETQRAVLVEETTEIVRRLFAMNWNAPX 526
           H +E L    + + P    VG   +V  PR L  +   V  E  +E V+R F  NW    
Sbjct: 68  HKREILEAVTIIETPPMVVVGVVGYVETPRGL-RSLTTVWAEHLSEEVKRRFYKNWFKSK 126

Query: 527 KGAYTNRFKK 556
           K A+T   KK
Sbjct: 127 KKAFTKYAKK 136


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -2

Query: 500 IVYVRFPWFLPPVQHVVSRVVHEEHDEQNR 411
           IV +   WF+ P+ ++V+RV+    ++Q +
Sbjct: 488 IVQIVVAWFVTPIIYLVARVILARRNKQRK 517


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 453 NVLYWWKKPRKSYV 494
           +++YWW   RKSY+
Sbjct: 512 SLVYWWSGARKSYI 525


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 324 SVDSGPATDPTIQRNFMVAMYVIFLGIIPSVLLVMFLVYYSR 449
           S DS PA    +QR   V +  +F   +PS++  M  +++++
Sbjct: 160 SFDSIPAIARFLQREIEVQLVSLFQEELPSIIYKMSRIWFAK 201


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 459  LYWWKKPRKSYVDYLL*TGTL 521
            +Y W KP   YV Y+  TGT+
Sbjct: 1378 VYSWGKPNFRYVQYIHRTGTV 1398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,314,658
Number of Sequences: 5004
Number of extensions: 45977
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)