Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30170
(606 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0732 + 20521459-20522323,20522404-20522480,20523251-205232... 33 0.13
04_04_1076 - 30639835-30640898,30641613-30641915,30642008-306420... 31 0.94
06_01_0932 + 7197418-7198893 30 1.6
01_04_0008 + 15041682-15041909,15042035-15042319,15042406-150427... 30 1.6
08_01_0922 + 9092266-9093174 29 2.2
02_05_0460 - 29224525-29224620,29225525-29226625 29 2.2
02_02_0526 + 11185825-11186832,11187795-11187869 29 2.2
09_04_0011 + 13703564-13703766,13704685-13705526,13705628-137057... 29 2.9
07_03_0843 - 21962223-21963815,21963957-21964607 29 3.8
03_05_0358 - 23438416-23439282,23440116-23440163,23440343-234403... 29 3.8
01_06_0201 - 27477392-27479728 28 5.0
01_06_0090 + 26358051-26359157,26359582-26359701,26359968-263600... 28 5.0
10_06_0001 - 9366721-9367293 28 6.6
03_05_1019 + 29736644-29736709,29737156-29737515,29737595-297377... 28 6.6
01_06_1596 - 38514278-38514346,38514547-38514705,38514776-385148... 28 6.6
08_02_1317 + 26095772-26096191,26096301-26096540,26096647-260967... 27 8.7
02_04_0443 - 22969690-22969700,22970561-22970642,22971484-229716... 27 8.7
>08_02_0732 +
20521459-20522323,20522404-20522480,20523251-20523296,
20523482-20523713,20524244-20524439
Length = 471
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/42 (40%), Positives = 19/42 (45%)
Frame = -2
Query: 356 GRVGGRTGVHGATRAGQGTQWRREPGFTVTVTLGLQTPCPEQ 231
G G G G AG G WRR G T + L L TP +Q
Sbjct: 33 GNGGAVGGAGGGKAAGGGDPWRRLDGSTASTELSLSTPQQQQ 74
>04_04_1076 -
30639835-30640898,30641613-30641915,30642008-30642068,
30643076-30644380
Length = 910
Score = 30.7 bits (66), Expect = 0.94
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 400 PRKITYIATMKFLWMVGSVAGPESTE-PPGPGKAH 299
PR + +AT+ W+ AGP+ E P G G+AH
Sbjct: 269 PRCTSLVATLGLTWLCFRRAGPDGEEGPRGDGRAH 303
>06_01_0932 + 7197418-7198893
Length = 491
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/52 (38%), Positives = 24/52 (46%)
Frame = +2
Query: 434 RVLLETQRAVLVEETTEIVRRLFAMNWNAPXKGAYTNRFKKRTSFAPQLAKL 589
RV L AV EE IVR L AM G RF+ +S +P+ A L
Sbjct: 84 RVGLPRPLAVSPEEARGIVRHLMAMREPGRAGGVNGERFESSSSSSPEFAAL 135
>01_04_0008 +
15041682-15041909,15042035-15042319,15042406-15042723,
15044087-15044128,15045111-15045391,15045808-15045883,
15046196-15046296,15047971-15048088,15048872-15049186
Length = 587
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +1
Query: 211 SSICPSNCSGHGVCNPRVTVTVKPGSRRHCVPCPA----LVAPWTP 336
S+ P+ G PR + KPG R+ CVP PA L A W P
Sbjct: 5 STDSPAADQSPGRGRPRRRLGRKPGPRQGCVPAPAAAEQLAAGWPP 50
>08_01_0922 + 9092266-9093174
Length = 302
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +1
Query: 214 SICPSNCSGH--GVCNPRVTVTVKPGSRRHCVPCPALVAPWTPV 339
S P++C G GVC TV + CVPC A V P+
Sbjct: 6 SASPASCGGAACGVCGGAATVYCAADAAALCVPCDAAVHAANPL 49
>02_05_0460 - 29224525-29224620,29225525-29226625
Length = 398
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = -2
Query: 428 HDEQNRRYDA----EEDHVHRDHEVPLDGRVGGRTGVHGAT 318
H Q RR +A + H+ R HE +G +GG G H A+
Sbjct: 96 HHGQGRRVEAPGGESQHHLQRHHEPARNGVLGGVAGAHAAS 136
>02_02_0526 + 11185825-11186832,11187795-11187869
Length = 360
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 500 IVYVRFPWFLPPVQHVVSRVVHEEHDEQNRRYDAEED 390
+VY+ P F+P Q R+ EE Q RR + E D
Sbjct: 154 VVYMAAPLFVPKSQRDTIRLREEEQHRQRRRLELELD 190
>09_04_0011 +
13703564-13703766,13704685-13705526,13705628-13705704,
13706294-13706339,13706479-13706722,13710078-13710150,
13711119-13711235
Length = 533
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/42 (40%), Positives = 18/42 (42%)
Frame = -2
Query: 347 GGRTGVHGATRAGQGTQWRREPGFTVTVTLGLQTPCPEQLDG 222
GGR G G G WRR G T + L L P P Q G
Sbjct: 80 GGRGGGGVVVGGGGGDPWRRLDGSTASTELSLSPP-PAQAAG 120
>07_03_0843 - 21962223-21963815,21963957-21964607
Length = 747
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -2
Query: 449 SRVVHEEHDEQNRRYDAEEDHVHRDHEVPLDGRVGGRTGVHGATRAGQGTQW 294
SR+VH E+DE R +A + + + +V + G AT GTQW
Sbjct: 147 SRIVHLEYDEFKVRLEALPETIRKRSDVYNSMKTD--QGAPNATWMANGTQW 196
>03_05_0358 -
23438416-23439282,23440116-23440163,23440343-23440382,
23440459-23440610
Length = 368
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 7/32 (21%)
Frame = -2
Query: 356 GRVGGRTGVHGATRAG-------QGTQWRREP 282
G VGGR G GAT G +G +WRR P
Sbjct: 239 GGVGGRLGARGATDGGRPAWRERRGRRWRRRP 270
>01_06_0201 - 27477392-27479728
Length = 778
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +1
Query: 223 PSNCSGHGVCNPRVTVTVKPGSRRHCVP 306
P +C HG+C PG R C+P
Sbjct: 272 PQHCDVHGLCGRNSICEYSPGPRCSCLP 299
>01_06_0090 +
26358051-26359157,26359582-26359701,26359968-26360099,
26360194-26360375,26360488-26360602,26362001-26362135,
26362261-26362395
Length = 641
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 373 MKFLWMVGSVAGPESTEPPGPGKAHSGGANPAS 275
M L + G A P PP P + SG A+PA+
Sbjct: 278 MPALSVCGRAAAPPPPPPPPPARRTSGAASPAA 310
>10_06_0001 - 9366721-9367293
Length = 190
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 443 VVHEEHDEQNRRYDAEEDHVHRDHEVPLDGRVGGRTGVH 327
VV EE +E+ + EE+ + E P+D G G H
Sbjct: 107 VVVEEEEEEEEEEEEEEEEEEEEEEEPVDDDDVGDNGQH 145
>03_05_1019 +
29736644-29736709,29737156-29737515,29737595-29737735,
29737912-29738044,29738344-29738457,29738553-29738701,
29740815-29740907,29741019-29741079,29741180-29741512,
29742149-29742224,29742322-29742421,29743300-29743369,
29743987-29744082,29744355-29744402,29744427-29744658,
29745186-29745246,29745265-29745375
Length = 747
Score = 27.9 bits (59), Expect = 6.6
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +1
Query: 220 CPSNCSGHGVC 252
CP+ C+GHG+C
Sbjct: 568 CPAKCTGHGIC 578
>01_06_1596 -
38514278-38514346,38514547-38514705,38514776-38514898,
38514985-38515047,38515248-38515352,38515487-38515586,
38515716-38515786,38516329-38516385,38516830-38516907,
38516975-38517049,38517180-38517230,38517453-38517466,
38517516-38517616,38517703-38517764,38518346-38518372,
38518901-38519581
Length = 611
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -2
Query: 347 GGRTGVHGATRAGQGTQWRREPGFTVTVTLGLQTPCPEQLDGQIDECLL 201
GG G G + G+GT + + TLG + P P ++ ++DE ++
Sbjct: 172 GGGGGSSGDSSGGEGTSAAPKREWWGGATLGEELPTPREMCRRLDEFVI 220
>08_02_1317 +
26095772-26096191,26096301-26096540,26096647-26096712,
26096836-26096904,26097004-26097075,26097164-26097382,
26097480-26097581
Length = 395
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -3
Query: 352 GSVAGPESTEPPGPGKAHSGGANPASQ*Q*P--SDYRRRARNSWTGRSTSAC*LSSPGR 182
G+ AG PP PG GG+ AS P S + A N+ +ST+A ++ G+
Sbjct: 77 GAGAGLFGMPPPAPGDFAGGGSREASSVSDPASSAMKDAAANAKKRKSTAAAAAAAKGK 135
>02_04_0443 -
22969690-22969700,22970561-22970642,22971484-22971601,
22973513-22973740,22973948-22974231
Length = 240
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 359 DGRVGGRTGVHGATRAGQGTQWRRE 285
+G GRT +HG+ G+ WRRE
Sbjct: 132 EGVADGRTWLHGSDWRGRRPAWRRE 156
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,884,163
Number of Sequences: 37544
Number of extensions: 383124
Number of successful extensions: 1591
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1590
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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