Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30170
(606 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_1367| Best HMM Match : EGF_2 (HMM E-Value=5.3e-06) 31 0.72
SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11) 31 0.96
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_10751| Best HMM Match : TNFR_c6 (HMM E-Value=7.6e-17) 30 1.3
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0) 29 3.9
SB_36327| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) 28 5.1
SB_47210| Best HMM Match : fn3 (HMM E-Value=0.0024) 28 5.1
SB_57634| Best HMM Match : EGF_2 (HMM E-Value=0.0014) 28 6.7
SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_1631| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_52865| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_23038| Best HMM Match : EGF_2 (HMM E-Value=2.8e-11) 27 8.9
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8) 27 8.9
SB_2561| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_55247| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-10) 27 8.9
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_13698| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 33.1 bits (72), Expect = 0.18
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +1
Query: 217 ICPSNCSGHGVCN 255
+CP+NCSGHG CN
Sbjct: 363 VCPNNCSGHGSCN 375
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 31.1 bits (67), Expect = 0.72
Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Frame = +1
Query: 133 CGEHKMCLKQ-RCVSVESVRETIVNKHSSICPS--NCSGHGVC-----NPRVTVTVKPG 285
C H CL +C + V H CP +C+GHGVC NP V VT PG
Sbjct: 87 CSGHGSCLADGKCYCDPGWKG--VGCHIPHCPGGGDCNGHGVCDGVTHNPPVCVTCDPG 143
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +1
Query: 133 CGEHKMCLKQRCVSVESVRETIVNKHSSI-CPSN---CSGHGVC 252
C H +C +C + R K +I CP N CSGHGVC
Sbjct: 182 CDSHGVCRDGKCSCDKGYRGA---KCETIGCPGNNVDCSGHGVC 222
Score = 28.7 bits (61), Expect = 3.9
Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Frame = +1
Query: 133 CGEHKMCLKQRCVSVESVRETIVNKHSSICPSNCSGHGVC---NPRVTVTVKPGSRRHCV 303
C H C C+ E + +CSGHGVC + VT T
Sbjct: 310 CSGHGKCNGSHCICDEGHKGVTCQLIDCPGEPDCSGHGVCVMQSGSVTPTCLCNQGFDGP 369
Query: 304 PCPALVAPWTPV 339
C LV P P+
Sbjct: 370 DCGKLVCPGVPM 381
>SB_1367| Best HMM Match : EGF_2 (HMM E-Value=5.3e-06)
Length = 776
Score = 31.1 bits (67), Expect = 0.72
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 196 IVNKHSSICPSNCSGHGVCNPRV 264
IVNK +CP +C+GHG C R+
Sbjct: 715 IVNK---LCPDDCNGHGKCRERI 734
>SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11)
Length = 1417
Score = 30.7 bits (66), Expect = 0.96
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 148 MCLKQRCVSVESVRETIVNKHSSICPSNCSGHGVCNPRVTVTVKPG 285
+C+ +C S+ S+R SI C+GHGVC PG
Sbjct: 508 ICINHKCESLSSLRP---KSCPSIGGKECAGHGVCTNEGKCACDPG 550
>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Frame = +1
Query: 133 CGEHKMCLKQRCVSVESVRETIVNKHSSI--CPS---NCSGHGVCN 255
C H C++ +C E+ + V + + CP NC+G+G CN
Sbjct: 1524 CSGHGECVEGKCKCNEAAGDAYVGVNCELPGCPGRDGNCNGNGFCN 1569
>SB_10751| Best HMM Match : TNFR_c6 (HMM E-Value=7.6e-17)
Length = 738
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 163 RCVSVESVRETIVNKHSSI-CPSNCSGHGVCNPRVTVTVKPGSRRHCVPC 309
+C E + + IV + + CP+ GHG+ P + G + CVPC
Sbjct: 20 KCKWNEYITKDIVGNEACVKCPNCAEGHGLM-PECGSHISYGDKFRCVPC 68
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = -1
Query: 336 RSPRSHQGR-ARHTVAARTRLHSDSDPRITDAVPGTVGRADRRVLVDYRLPDG 181
+ RS GR R RT H D +PR D P RA R+ D R P G
Sbjct: 256 KQSRSEHGRWDRQRFGERTEKHQDREPRKVDREPRRDDRATRK---DDRQPRG 305
>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3762
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = -2
Query: 470 PPVQHVVSRVVHEEHDEQNRRYDAEEDHVHRDHEVPLDGRVGGRTG 333
PP Q EQ +D DH+H + +PL +V TG
Sbjct: 3120 PPQQPEEKESEEANEHEQEHEHDTSGDHIHFEPIIPLPDKVERVTG 3165
>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3255
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 229 NCSGHGVCNPRVTVTVKPGSRRHCVPCPALVAP 327
N + +G C R+ ++PG+ R + CP V P
Sbjct: 2708 NTNDYGACVVRIITPLQPGNVRFVLLCPIAVEP 2740
>SB_36327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 409
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +1
Query: 160 QRCVSVESVRETIVNKHSSICPSNCSGHGVCNPRV 264
+RCV V+ VRE V K C GVC RV
Sbjct: 157 ERCVCVQGVREVRVYKVYERCVCTRCMRGVCEVRV 191
>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
Length = 1023
Score = 28.3 bits (60), Expect = 5.1
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 12/81 (14%)
Frame = +1
Query: 163 RCVSVESVRETIVNKHSSICPSNCS-------GHGVCNP-----RVTVTVKPGSRRHCVP 306
RCV + ++ ++ S P +C+ G G C P ++ V PG+ +C P
Sbjct: 788 RCVECPA-GQSCMSGSSPTTPQDCAAGTYSPPGFGTCKPCQSGKKLVNPVNPGAT-YCTP 845
Query: 307 CPALVAPWTPVRPPTRPSKGT 369
CPA + TP P + GT
Sbjct: 846 CPAGSSCPTPSSPRVPCTAGT 866
>SB_47210| Best HMM Match : fn3 (HMM E-Value=0.0024)
Length = 172
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +3
Query: 390 IFLGI-IPSVLLVMFLVYYSRHNVLYWWKKPRK 485
+ LGI IP V+LV+ +V +S + WWKK RK
Sbjct: 132 LILGIVIPVVILVVIVVAFSVL-LRRWWKKKRK 163
>SB_57634| Best HMM Match : EGF_2 (HMM E-Value=0.0014)
Length = 198
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 214 SICPSNCSGHGVCNPRVTVTVKPGSRRHCVPCPALV 321
++CP++CSG G C R + + + C ALV
Sbjct: 60 NLCPNDCSGLGNCTNRTCICLDGYTGADCSLSKALV 95
>SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1017
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 214 SICPSNCSGHGVCNPRVTVTVKPGSRRHCVPCPALV 321
++CP++CSG G C R + + + C ALV
Sbjct: 378 NLCPNDCSGLGNCTNRTCICLDGYTGADCSLSKALV 413
>SB_1631| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 884
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 214 SICPSNCSGHGVCNPRVTVTVKPG 285
++CP++CSG+G C R T T + G
Sbjct: 722 NLCPNDCSGNGNCTNR-TCTCEEG 744
>SB_52865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 220 CPSNCSGHGVCNPRVTVTVKPGSRRHCVPCPALVAPWTP 336
C + CSGHG C+ V + S+ H V C PW P
Sbjct: 143 CTNGCSGHGACDSGV---CQCQSQWHGVSCN---LPWCP 175
>SB_23038| Best HMM Match : EGF_2 (HMM E-Value=2.8e-11)
Length = 1477
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +1
Query: 133 CGEHKMCL-KQRCVSVESVRETIVNKHSSICPSNCSGHGVCNPRVT 267
C H C+ + CV + + + C +NCS HG C R T
Sbjct: 1352 CSNHGQCVARDTCVCDQKFSGNDCS--ADTCENNCSNHGQCVARDT 1395
>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
Length = 193
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 275 TVTVTLGLQTPCPEQLDGQIDECLLTIVSRTDSTDTHLCFKH 150
T+T+T Q+P P I +TI S + ST H+ +H
Sbjct: 55 TITITSSSQSPSPSPHHHLIVTVTVTITSSSPSTHRHIHRQH 96
>SB_2561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 649
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1
Query: 304 PCPALVAPWTPV 339
PCP +V PWTPV
Sbjct: 332 PCPYVVFPWTPV 343
>SB_55247| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-10)
Length = 330
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/37 (27%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 345 TDPTIQRN-FMVAMYVIFLGIIPSVLLVMFLVYYSRH 452
TD T+ + MV ++++ + +IP++ L++ + +RH
Sbjct: 194 TDDTVTTHRVMVLIFIVIMNLIPTIGLLIIAILITRH 230
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Frame = +1
Query: 214 SICPSNCSGH---GVCNPR-VTVTVKPGSRRHC-VPCPALVAPWTPVR 342
S+CP NCS C P+ T + ++ C CP + P PV+
Sbjct: 1688 SVCPPNCSAQSCGNFCPPKCCTSQLSKDRQKECKESCPKVCGPGCPVQ 1735
>SB_13698| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 369 FMVAMYVIFLGIIPSVLLVMFLVYYSRH 452
FM +VIF+ IIPS +LV ++ +R+
Sbjct: 200 FMFYGFVIFVYIIPSAILVFIVIRMTRY 227
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,786,122
Number of Sequences: 59808
Number of extensions: 419218
Number of successful extensions: 1780
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1758
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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