Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30170
(606 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81460-5|CAB03832.1| 952|Caenorhabditis elegans Hypothetical pr... 38 0.006
Z70209-3|CAA94147.1| 952|Caenorhabditis elegans Hypothetical pr... 38 0.006
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 30 1.1
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 30 1.1
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 30 1.1
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 30 1.1
AF077541-3|AAM54172.1| 750|Caenorhabditis elegans Alpha-catulin... 30 1.5
AL132948-8|CAC51068.1| 230|Caenorhabditis elegans Hypothetical ... 28 4.5
AL023810-4|CAD59138.1| 384|Caenorhabditis elegans Hypothetical ... 28 4.5
AL008881-3|CAD59164.1| 384|Caenorhabditis elegans Hypothetical ... 28 4.5
AL008881-1|CAA15517.2| 343|Caenorhabditis elegans Hypothetical ... 28 4.5
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ... 28 4.5
AF125960-2|AAD14736.1| 478|Caenorhabditis elegans Hypothetical ... 27 7.9
>Z81460-5|CAB03832.1| 952|Caenorhabditis elegans Hypothetical
protein C04A11.4 protein.
Length = 952
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +1
Query: 127 AACGEHKMCLKQRCVSVESVRETIVNKHSSICPSNCSGHGVCN 255
A CGE +MC+ Q+C E + +K ++ C NC+ GVCN
Sbjct: 598 AICGEEQMCIGQKCHKKEKI-----SKVTAQCLDNCNFRGVCN 635
>Z70209-3|CAA94147.1| 952|Caenorhabditis elegans Hypothetical
protein C04A11.4 protein.
Length = 952
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +1
Query: 127 AACGEHKMCLKQRCVSVESVRETIVNKHSSICPSNCSGHGVCN 255
A CGE +MC+ Q+C E + +K ++ C NC+ GVCN
Sbjct: 598 AICGEEQMCIGQKCHKKEKI-----SKVTAQCLDNCNFRGVCN 635
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 30.3 bits (65), Expect = 1.1
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +2
Query: 317 WWLRGLRSGHRPD----HPKELHGRDVRDLPRHHTVGSARHVPR-VLLETQRAVLVEETT 481
W L L G +PD K L G D GS RHVPR V+++ + V+ E T
Sbjct: 21 WELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGRHVPRAVMVDLEPTVIDEIRT 80
Query: 482 EIVRRLF 502
R LF
Sbjct: 81 GTYRSLF 87
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 30.3 bits (65), Expect = 1.1
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +2
Query: 317 WWLRGLRSGHRPD----HPKELHGRDVRDLPRHHTVGSARHVPR-VLLETQRAVLVEETT 481
W L L G +PD K L G D GS RHVPR V+++ + V+ E T
Sbjct: 20 WELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGRHVPRAVMVDLEPTVIDEIRT 79
Query: 482 EIVRRLF 502
R LF
Sbjct: 80 GTYRSLF 86
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 30.3 bits (65), Expect = 1.1
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +2
Query: 317 WWLRGLRSGHRPD----HPKELHGRDVRDLPRHHTVGSARHVPR-VLLETQRAVLVEETT 481
W L L G +PD K L G D GS RHVPR V+++ + V+ E T
Sbjct: 21 WELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGRHVPRAVMVDLEPTVIDEIRT 80
Query: 482 EIVRRLF 502
R LF
Sbjct: 81 GTYRSLF 87
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 30.3 bits (65), Expect = 1.1
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +2
Query: 317 WWLRGLRSGHRPD----HPKELHGRDVRDLPRHHTVGSARHVPR-VLLETQRAVLVEETT 481
W L L G +PD K L G D GS RHVPR V+++ + V+ E T
Sbjct: 21 WELYCLEHGIQPDGQMPSDKSLGGSDDSFSTFFSETGSGRHVPRAVMVDLEPTVIDEIRT 80
Query: 482 EIVRRLF 502
R LF
Sbjct: 81 GTYRSLF 87
>AF077541-3|AAM54172.1| 750|Caenorhabditis elegans Alpha-catulin
(catenin/vinculinrelated) protein 1, isoform d protein.
Length = 750
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 356 GRVGGRTGVHGATRAGQGTQWRREP 282
G V GRTG G + + T WRR P
Sbjct: 703 GSVNGRTGADGERTSRESTVWRRTP 727
>AL132948-8|CAC51068.1| 230|Caenorhabditis elegans Hypothetical
protein Y39B6A.9 protein.
Length = 230
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -2
Query: 428 HDEQNRRYDAEEDHVHRDHEVPLD-GRVGGRTGVHGATRAGQGTQWRRE 285
HD++ YD +ED H+ H D G+ G + G G + G W+ E
Sbjct: 165 HDDKYTSYD-KEDAGHKKHHDKYDIGKYGAKQG--GYAKQGHEEGWKNE 210
>AL023810-4|CAD59138.1| 384|Caenorhabditis elegans Hypothetical
protein Y9C2UA.1b protein.
Length = 384
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 366 NFMVAMYVIFLGIIPSVLLVMFLVYYSRHNVLYWWKKP 479
N +V + F+ +IP + +M +YY+ + WW +P
Sbjct: 159 NSIVFNAIFFILLIPFLNGLMIFLYYAHFMDIVWWYEP 196
>AL008881-3|CAD59164.1| 384|Caenorhabditis elegans Hypothetical
protein Y9C2UA.1b protein.
Length = 384
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 366 NFMVAMYVIFLGIIPSVLLVMFLVYYSRHNVLYWWKKP 479
N +V + F+ +IP + +M +YY+ + WW +P
Sbjct: 159 NSIVFNAIFFILLIPFLNGLMIFLYYAHFMDIVWWYEP 196
>AL008881-1|CAA15517.2| 343|Caenorhabditis elegans Hypothetical
protein Y9C2UA.1a protein.
Length = 343
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +3
Query: 366 NFMVAMYVIFLGIIPSVLLVMFLVYYSRHNVLYWWKKP 479
N +V + F+ +IP + +M +YY+ + WW +P
Sbjct: 118 NSIVFNAIFFILLIPFLNGLMIFLYYAHFMDIVWWYEP 155
>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
protein W05F2.7 protein.
Length = 1424
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = -2
Query: 365 PLDGRVGGRTGVHGATRAGQGTQWRREPGFTVTVTLGLQTPCPEQLDGQIDECLLTIVS 189
P+ G GG G G+T Q + GFT+ + TP G L T+V+
Sbjct: 564 PVTGGTGGTMGPMGSTGVTQASPVTGATGFTMPTGISQSTPAIGGTMGSTGMTLTTLVA 622
>AF125960-2|AAD14736.1| 478|Caenorhabditis elegans Hypothetical
protein T12B3.2 protein.
Length = 478
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 363 RNFMVAMYVIFLGIIPSVLLVMFLV 437
R + +A YV L +IP++LLV+F++
Sbjct: 194 REWRLATYVSSLSLIPALLLVIFVI 218
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,380,590
Number of Sequences: 27780
Number of extensions: 287751
Number of successful extensions: 1178
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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