Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30170
(606 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 31 0.78
At3g60530.1 68416.m06770 zinc finger (GATA type) family protein ... 31 0.78
At4g15840.1 68417.m02409 expressed protein 30 1.4
At2g23990.2 68415.m02866 plastocyanin-like domain-containing pro... 29 1.8
At2g23990.1 68415.m02865 plastocyanin-like domain-containing pro... 29 1.8
At2g15340.1 68415.m01754 glycine-rich protein 29 3.2
At1g30300.1 68414.m03705 expressed protein similar to putative h... 29 3.2
At5g42620.1 68418.m05188 expressed protein 28 4.2
At3g06810.1 68416.m00808 acyl-CoA dehydrogenase-related low simi... 28 4.2
At2g29540.1 68415.m03588 DNA-directed RNA polymerase I(A) and II... 28 4.2
At5g24670.1 68418.m02916 cytidine/deoxycytidylate deaminase fami... 27 7.3
At3g52250.1 68416.m05742 myb family transcription factor contain... 27 7.3
At3g21630.1 68416.m02728 protein kinase family protein contains ... 27 7.3
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea... 27 9.6
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 30.7 bits (66), Expect = 0.78
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +1
Query: 256 PRVTVTVKPGSRRHCVPCPALVAPWTPVRPPTRP 357
P T VKP + V P P TPV+PPT P
Sbjct: 167 PTTTPPVKPPTTTPPVQPPTYNPPTTPVKPPTAP 200
>At3g60530.1 68416.m06770 zinc finger (GATA type) family protein
identical to cDNA for GATA transcription factor 4
GI:2959735
Length = 240
Score = 30.7 bits (66), Expect = 0.78
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 256 PRVTVTVKPGSRRHCVPCPALVAPWTPV 339
P ++ T KP SRR P P++ W P+
Sbjct: 102 PEISFTGKPRSRRSRAPAPSVAGTWAPM 129
>At4g15840.1 68417.m02409 expressed protein
Length = 660
Score = 29.9 bits (64), Expect = 1.4
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 3/107 (2%)
Frame = -2
Query: 470 PPVQHVVSRVVHEEHDEQNRRYDAEEDHVHRDHEVPLDG---RVGGRTGVHGATRAGQGT 300
PP V SRV + +Q+ D E + + E+ DG VG G G +G
Sbjct: 374 PPTPFVYSRVPINRNGQQSIASDGSEGRIDQSGEISKDGLTALVGLSQGTSGVGNNPRGE 433
Query: 299 QWRREPGFTVTVTLGLQTPCPEQLDGQIDECLLTIVSRTDSTDTHLC 159
Q E G T+G+ P + + + TI + T T LC
Sbjct: 434 Q--TEGGRGSGATVGMSEPKEPSVGTEWENASCTI---SLDTKTPLC 475
>At2g23990.2 68415.m02866 plastocyanin-like domain-containing
protein
Length = 226
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +1
Query: 244 GVCNPRVTVTVKPGSRRHCVPCPALVAPWTPVRPPTRPS 360
G C VTV S H P PA V P P +P T P+
Sbjct: 135 GNCAKGEKVTVVVQSPNHPKPGPAAVTPTLPPKPSTTPA 173
>At2g23990.1 68415.m02865 plastocyanin-like domain-containing
protein
Length = 207
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +1
Query: 244 GVCNPRVTVTVKPGSRRHCVPCPALVAPWTPVRPPTRPS 360
G C VTV S H P PA V P P +P T P+
Sbjct: 116 GNCAKGEKVTVVVQSPNHPKPGPAAVTPTLPPKPSTTPA 154
>At2g15340.1 68415.m01754 glycine-rich protein
Length = 119
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = -3
Query: 361 WMVGSVAGPESTEPPG--PGKAHSGGANP 281
W GS ST PG PG ++SGG+NP
Sbjct: 38 WGWGSDGSSTSTSGPGSTPGDSNSGGSNP 66
>At1g30300.1 68414.m03705 expressed protein similar to putative
hydrolase GI:7270684 from [Arabidopsis thaliana];
similar to PhnP protein (GI:15620485) [Rickettsia
conorii]
Length = 324
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 224 GQIDECLLTIVSRTDSTDTHLCFKHIL 144
GQ+D +L + +T S +THLCF L
Sbjct: 245 GQLDLLILDTLYKTGSHNTHLCFPQTL 271
>At5g42620.1 68418.m05188 expressed protein
Length = 841
Score = 28.3 bits (60), Expect = 4.2
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +1
Query: 220 CPSNCSGHGVC 252
CP+NC+GHG C
Sbjct: 634 CPNNCNGHGKC 644
>At3g06810.1 68416.m00808 acyl-CoA dehydrogenase-related low
similarity to acyl-CoA dehydrogenase [Acinetobacter sp.
NCIMB9871] GI:14587418; contains Pfam profiles PF01636:
Phosphotransferase enzyme family, PF00441: Acyl-CoA
dehydrogenase C-terminal domain, PF02770: Acyl-CoA
dehydrogenase middle domain
Length = 824
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -1
Query: 234 TVGRADRRVLVDYRLPDGLNGHAPLFQAHLVLPAGG-SVGHEAGIXVSQSQIDDGR 70
T G + +R L + D +GHA + ++V+PA +G G ++Q ++ GR
Sbjct: 626 TPGISVKRPLTVFGFDDAPHGHAEISFENVVVPAKNILLGEGRGFEIAQGRLGPGR 681
>At2g29540.1 68415.m03588 DNA-directed RNA polymerase I(A) and
III(C) 14 kDa subunit (RPAC14) identical to RNA
polymerase I(A) and III(C) 14 kDa subunit (AtRPAC14)
[Arabidopsis thaliana] GI:1184686
Length = 122
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 464 VQHVVSRVVHEEHDEQNRRYDAEEDHVHRDHEV 366
V+ V + V E DEQ R+ +AEE+ + R ++
Sbjct: 81 VRSVFDKAVAEYKDEQKRKEEAEEEELKRQRDL 113
>At5g24670.1 68418.m02916 cytidine/deoxycytidylate deaminase family
protein similar to SP|Q9URQ3 tRNA-specific adenosine
deaminase 3 (EC 3.5.4.-) (tRNA-specific adenosine-34
deaminase subunit TAD3) {Saccharomyces cerevisiae};
contains Pfam profile PF00383: Cytidine and
deoxycytidylate deaminase zinc-binding region
Length = 432
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 348 DPTIQRNFMVAMYVIFLGIIPSVLLVMFLVYYSRHNVLY 464
DP+++R ++ Y IFL + P + M LV+ + Y
Sbjct: 350 DPSMERPYLCTGYDIFLLLEPCTMCAMALVHQRIKRIFY 388
>At3g52250.1 68416.m05742 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 1677
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 221 QIDECLLTIVSRTDSTDTHLCFKHILCSPQ 132
QI+ CL T VS + HL F H++ P+
Sbjct: 1044 QINSCLRTSVSSRERCMDHLKFNHVVKKPR 1073
>At3g21630.1 68416.m02728 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 617
Score = 27.5 bits (58), Expect = 7.3
Identities = 9/19 (47%), Positives = 17/19 (89%)
Frame = +3
Query: 390 IFLGIIPSVLLVMFLVYYS 446
I +G+I ++LL++F+VYY+
Sbjct: 238 IVIGVIVALLLILFIVYYA 256
>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
sapiens]
Length = 726
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 238 GHGVCNPRVTVTVKPGSRRHCVPCPALVA 324
GHGV NP VT T GS H + P+ A
Sbjct: 398 GHGVANPVVTPT---GSSNHGISAPSSTA 423
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,694,488
Number of Sequences: 28952
Number of extensions: 266490
Number of successful extensions: 923
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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