Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30167
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.2  
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.9  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    26   5.1  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    26   6.7  
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|...    25   8.9  

>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 314

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +1

Query: 271 LGALFQLHTNLSYCSLLRHFDKAAQHENPLIVSTYHRIAFPVDSAXTALARVRVSNIVRF 450
           LG +   H ++ + +L +  D    H +PL V   H +    DSA   L +  +   +  
Sbjct: 133 LGTIPPEHPDVFFHNLKKKLDSLHTHSSPLTVYRNHLLTCETDSALAQLFKSEIYQQLSD 192

Query: 451 ESREF 465
             R+F
Sbjct: 193 FRRDF 197


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 272 SGKRSNPYKFALTFTLSRTLKNFH*AHCLLYVYVETI 162
           S K+ N   + + FTL+ +L N   A C L++ V T+
Sbjct: 9   SKKKRNTQIYRIFFTLTFSLSNLFLAICYLFLNVRTV 45


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 595 RQYQITRTHGISSPHKELNINSFFFSYLFSKLEG 494
           RQY   + H ++   +E N +SF F+Y + +LEG
Sbjct: 52  RQYS-DQLHKLAMNMQEKNNSSFAFNYAWKQLEG 84


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 583 ITRTHGISSPHKELNINSFFFSYLFSKLEGLF 488
           + R H   S  ++ + N FFF Y F +  G+F
Sbjct: 272 VIRCHSDHSSLEQQSSNDFFFKYKFPEPYGMF 303


>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 405

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 601 EYRQYQITRTHGISSPHKELNINSFFFSYL 512
           +Y+      T  +SSPH+ +    ++FS+L
Sbjct: 374 DYKARAAATTVWVSSPHETIEFLDYYFSFL 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,931,925
Number of Sequences: 5004
Number of extensions: 58889
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)