Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30167
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0510 + 34423528-34424046,34424132-34425025                       30   2.3  
03_06_0282 - 32824950-32825135,32825247-32825505,32825651-328259...    29   5.3  
01_07_0162 + 41576824-41577438                                         28   9.3  

>03_06_0510 + 34423528-34424046,34424132-34425025
          Length = 470

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 300 FELLLFITPFR*SGTTREPSHRFHLPPDRVSGR 398
           F + +F T F      R P HRF   PD +SGR
Sbjct: 51  FAVTVFHTHFNAPDAARHPEHRFVAVPDGMSGR 83


>03_06_0282 -
           32824950-32825135,32825247-32825505,32825651-32825901,
           32826309-32826425,32826613-32826687,32826788-32827009,
           32827396-32827509,32827694-32827801
          Length = 443

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 19/64 (29%), Positives = 24/64 (37%)
 Frame = -3

Query: 346 VVPLYRNGVIKSNNSNLYAVGTAPLAANVPTHTNXXXXXXXXXX*KTFTKLTAYCMFTLK 167
           ++P    GVI  +N+N         AAN PT              +T T     C   LK
Sbjct: 285 LIPAALGGVINKDNANEIKAKYIIEAANHPTDPEADEASTSDSIWQTNTPTATKCTICLK 344

Query: 166 LFLS 155
            FLS
Sbjct: 345 CFLS 348


>01_07_0162 + 41576824-41577438
          Length = 204

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 147 TSWYIK*F*VTRPRCSRRADYKMQSRYFLLPSQAERSR 34
           T W +  + +T PRC RRAD   +  +++L    + SR
Sbjct: 139 TGWMMAEYEITDPRCYRRADDGEEDDFWVLCHVRKSSR 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,920,108
Number of Sequences: 37544
Number of extensions: 345409
Number of successful extensions: 677
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)