Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30167
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43611| Best HMM Match : FA_desaturase (HMM E-Value=7.6)             29   5.4  
SB_17282| Best HMM Match : LRR_1 (HMM E-Value=1.1e-07)                 28   7.2  

>SB_43611| Best HMM Match : FA_desaturase (HMM E-Value=7.6)
          Length = 220

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/65 (26%), Positives = 34/65 (52%)
 Frame = +1

Query: 277 ALFQLHTNLSYCSLLRHFDKAAQHENPLIVSTYHRIAFPVDSAXTALARVRVSNIVRFES 456
           +L Q+HT  +Y S  RH+       + +I+ T +  A+P       L+++  +++++ E 
Sbjct: 7   SLIQVHTGYAYPSTHRHYLSKKTQASLIILHTGY--AYPTTHRLLHLSKITQASLIQ-EH 63

Query: 457 REFTY 471
             FTY
Sbjct: 64  TGFTY 68


>SB_17282| Best HMM Match : LRR_1 (HMM E-Value=1.1e-07)
          Length = 651

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +1

Query: 214 KVLDSVKVNANLYGLERLPLGALFQLHTNLSYCSLLRHFDKAAQHENPLIVSTYHRIAF 390
           K+ + ++ NANL+ L  +P+      H  L  C L    D     +   I S + +I F
Sbjct: 164 KIWEHIQQNANLFSLCYIPVNCFIICHCLLQICKLSTSSDHVLPVKITEIYSMFLKIFF 222


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,369,026
Number of Sequences: 59808
Number of extensions: 423847
Number of successful extensions: 676
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)