Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30167
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021473-1|CAA16305.1|  570|Caenorhabditis elegans Hypothetical ...    31   1.2  
AC084196-5|AAK29948.2|  199|Caenorhabditis elegans Hypothetical ...    29   3.6  
L08970-1|AAA53660.1|  627|Caenorhabditis elegans choline acetylt...    29   4.7  
L08969-1|AAA53659.1|  627|Caenorhabditis elegans choline acetylt...    29   4.7  
AF036701-3|AAB88370.1|  627|Caenorhabditis elegans Abnormal chol...    29   4.7  
AC006720-3|AAF60447.1|  159|Caenorhabditis elegans Hypothetical ...    28   8.3  

>AL021473-1|CAA16305.1|  570|Caenorhabditis elegans Hypothetical
           protein Y20C6A.2 protein.
          Length = 570

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 253 GLERLPLGALFQLHTNLSYCSLLRHFDKAAQHENPLIVSTYHRI 384
           G+ERLP G ++   ++LS    L HF +   H   + +   H +
Sbjct: 65  GIERLPTGTVYLKRSDLSPRQCLDHFQEVFWHYKKIFIEIDHTV 108


>AC084196-5|AAK29948.2|  199|Caenorhabditis elegans Hypothetical
           protein Y55D5A.4 protein.
          Length = 199

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +3

Query: 246 FVWVGTFAARGAVPTAYKFELLLFITPFR*SGT 344
           FVW   F++ G  P AY  E  L   PF   GT
Sbjct: 52  FVWDWPFSSDGTAPGAYTPEKFLVCLPFNKGGT 84


>L08970-1|AAA53660.1|  627|Caenorhabditis elegans choline
           acetyltransferase protein.
          Length = 627

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 644 YAIEFWRPDHXDNVGVSTIPNNANPRYIFAS*RTQYKQ 531
           +A +FW P+    V + T P N+NP YIF   + + K+
Sbjct: 81  WATKFWLPEMYMRVRMPT-PVNSNPGYIFPKVKFETKE 117


>L08969-1|AAA53659.1|  627|Caenorhabditis elegans choline
           acetyltransferase protein.
          Length = 627

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 644 YAIEFWRPDHXDNVGVSTIPNNANPRYIFAS*RTQYKQ 531
           +A +FW P+    V + T P N+NP YIF   + + K+
Sbjct: 81  WATKFWLPEMYMRVRMPT-PVNSNPGYIFPKVKFETKE 117


>AF036701-3|AAB88370.1|  627|Caenorhabditis elegans Abnormal choline
           acetyltransferaseprotein 1, isoform b protein.
          Length = 627

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 644 YAIEFWRPDHXDNVGVSTIPNNANPRYIFAS*RTQYKQ 531
           +A +FW P+    V + T P N+NP YIF   + + K+
Sbjct: 81  WATKFWLPEMYMRVRMPT-PVNSNPGYIFPKVKFETKE 117


>AC006720-3|AAF60447.1|  159|Caenorhabditis elegans Hypothetical
           protein Y17G9B.6 protein.
          Length = 159

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 265 LPLGALFQLHTNLSYCSLLRHFDKAAQHENPLIVSTYHRIAF 390
           LP  A+F L+  L   S    F K  Q +   ++STY++ +F
Sbjct: 35  LPFSAIFSLYWLLHPFSASTGFSKGPQSDYRTLISTYYQQSF 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,983,195
Number of Sequences: 27780
Number of extensions: 319554
Number of successful extensions: 565
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)