Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30166
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    29   0.51 
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    27   2.7  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    27   2.7  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    25   6.2  
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    25   6.2  
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    25   6.2  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   8.3  
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ...    25   8.3  

>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +1

Query: 370 STVKGEKRQNE*GRXSYTLILMFPERYDMSFFKRGLWRVLSGRQRLALPLALLKS 534
           S    E+ ++   R + + +L FPE++      RGL      +QR+A+  ALL++
Sbjct: 583 SNASQEEIEDAAKRANCSFVLSFPEKWSTQVGTRGLQLSGGQKQRIAIARALLRN 637


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 427 ILMFPERYDMSFFKRGLWRVLSGRQRLALPLALLK 531
           IL FP+ Y+    +RGL      +QR+A+  A+LK
Sbjct: 703 ILQFPDGYNSRVGERGLKLSGGEKQRVAVARAILK 737


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 418 YTLILMFPERYDMSFFKRGLWRVLSGRQRLALPLALLKS 534
           + +I  FPE Y     +RGL      +QRLA+   LLK+
Sbjct: 559 HDIIESFPEGYQTKVGERGLMISGGEKQRLAVSRLLLKN 597


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 65  RYYYYFSKYPLFIENNLFHI 124
           R +++F  Y LFI NNL  I
Sbjct: 290 RSFFHFDPYSLFISNNLEEI 309


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 268 LNAPKKFHFKNNIMKIKNVIFKP*N 194
           ++A K FH  N++ +I N  F+P N
Sbjct: 280 VSAAKAFHESNSVQEITNQCFEPYN 304


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 268 LNAPKKFHFKNNIMKIKNVIFKP*N 194
           ++A K FH  N++ +I N  F+P N
Sbjct: 276 VSAAKAFHESNSVQEITNQCFEPYN 300


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 65  RYYYYFSKYPLFIENNLFHIFPIN*TC 145
           +Y  YFS +P     N+ H++PI   C
Sbjct: 881 KYIDYFSSHPHDSLINILHLYPIETFC 907


>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
           subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 291 IRYG*RENIRFRKSESEKIDRASRE 365
           +RYG  ++I  RK E+EK++  ++E
Sbjct: 161 VRYGFSDDIMKRKLETEKLEANNKE 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,229,300
Number of Sequences: 5004
Number of extensions: 41780
Number of successful extensions: 100
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)