Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30166
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0670 - 4976658-4978037,4978128-4979015,4982590-4983130,498...    28   6.4  
02_01_0672 - 4989053-4990432,4990523-4991410,4995896-4996436,499...    27   8.5  

>02_01_0670 -
           4976658-4978037,4978128-4979015,4982590-4983130,
           4983209-4983845,4983962-4983992,4984094-4984324
          Length = 1235

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 415 SYTLILMFPERYDMSFFKRGLWRVLSGRQRLALPLALLKS 534
           +++ I   P+ YD    +RG+      +QR+A+  A+LKS
Sbjct: 466 AHSFISQLPQGYDTQVGERGVQMSGGQKQRIAIARAILKS 505


>02_01_0672 -
           4989053-4990432,4990523-4991410,4995896-4996436,
           4996532-4997168,4997266-4997320,4997439-4997675
          Length = 1245

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 415 SYTLILMFPERYDMSFFKRGLWRVLSGRQRLALPLALLKS 534
           ++  I   P+ YD    +RG+      +QR+A+  A+LKS
Sbjct: 476 AHNFISQLPQGYDTQVGERGVQMSGGQKQRIAIARAILKS 515


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,452,625
Number of Sequences: 37544
Number of extensions: 244599
Number of successful extensions: 509
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)