Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30166
         (591 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22937| Best HMM Match : HD (HMM E-Value=1e-11)                      29   3.8  
SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23)                     29   3.8  
SB_55022| Best HMM Match : 7tm_1 (HMM E-Value=0.011)                   28   5.0  

>SB_22937| Best HMM Match : HD (HMM E-Value=1e-11)
          Length = 248

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 556 VSGYRRPWTSAMPGAEQAAAYRLILSTS 473
           +S +RR W +A   AE+ AA RL++ T+
Sbjct: 27  ISHFRRVWATAQQLAEETAADRLVILTA 54


>SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23)
          Length = 998

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -2

Query: 554 EWLPSPMDFSNARGRASRCLPLNTLH 477
           E+  SPM   N    +SRCL LNTLH
Sbjct: 611 EYHESPMRRHNQSCHSSRCLLLNTLH 636


>SB_55022| Best HMM Match : 7tm_1 (HMM E-Value=0.011)
          Length = 441

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = -2

Query: 443 SGNISISV*EXRPHSFCLFSPFTVEWFARRSVYFLTLALPKSYIFSLAVTNRSRVKFYSQ 264
           +GN +I+  +  P  +CLF+P+    FA     F T+ +  S +F  ++ + SR   +S 
Sbjct: 54  AGNGAITEFKDAPRIYCLFNPYGE--FALFFALFNTVLVLISAVFIWSILSSSRRTLFSA 111

Query: 263 R 261
           R
Sbjct: 112 R 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,954,293
Number of Sequences: 59808
Number of extensions: 291629
Number of successful extensions: 548
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)