Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30166
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023856-4|CAC15863.1|  331|Caenorhabditis elegans Hypothetical ...    29   3.3  
AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical ...    27   10.0 

>AL023856-4|CAC15863.1|  331|Caenorhabditis elegans Hypothetical
           protein Y94A7B.7 protein.
          Length = 331

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 421 TLILMFPERYDMSFFKRGLWRVL 489
           T+I MF  RY + F K+G WR L
Sbjct: 109 TIISMFENRYFVLFVKKGPWRYL 131


>AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical
            protein Y54E10A.11 protein.
          Length = 1446

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 484  VLSGRQRLALPLALLKSMGDGNHSPSGGP 570
            V + R++L+LP+ + KS    +H+P  GP
Sbjct: 1135 VSTNRRKLSLPVMISKSYPKDHHNPHVGP 1163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,111,897
Number of Sequences: 27780
Number of extensions: 229312
Number of successful extensions: 513
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)