Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30166
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.56 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.2  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   3.0  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.0  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 273 KFNSRPIRYG*RENIRFRKSESEKIDRASREPLDCEGREKT 395
           K N   I     + +  +K E+  +DR   +  +CE +EK+
Sbjct: 74  KLNQLEIESDNSKEVNDKKEENFIVDRLRNDLFECENKEKS 114


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 566 PPDGEWLPSPMDFSNARG 513
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 359 RRSVYFLTLALPKSYIFSLAVTNRSRVKFY 270
           RR  + L    P  Y + LAV+NR +   Y
Sbjct: 359 RRISFILVHGFPLEYEYVLAVSNRIQKVIY 388


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -2

Query: 71  NIYFAVVLTFTILFYF 24
           N+Y+ V+L + I ++F
Sbjct: 74  NVYYIVILAWAIFYFF 89


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 13/49 (26%), Positives = 17/49 (34%)
 Frame = -1

Query: 573 IRPT*W*VVTVAHGLQQCQGQSKPLPTA*YSPQASFEEGHVIALGKHKY 427
           + PT   V    H    CQ Q  P PT  +      + G    L +  Y
Sbjct: 714 VEPTDVSVERNKHVALHCQAQGVPTPTIVWKKATGSKSGEYEELRERAY 762


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 13/49 (26%), Positives = 17/49 (34%)
 Frame = -1

Query: 573 IRPT*W*VVTVAHGLQQCQGQSKPLPTA*YSPQASFEEGHVIALGKHKY 427
           + PT   V    H    CQ Q  P PT  +      + G    L +  Y
Sbjct: 710 VEPTDVSVERNKHVALHCQAQGVPTPTIVWKKATGSKSGEYEELRERAY 758


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,951
Number of Sequences: 438
Number of extensions: 3343
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)