Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30166
         (591 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g28630.1 68417.m04093 ABC transporter family protein identica...    30   1.0  
At4g28620.1 68417.m04092 ABC transporter family protein identica...    30   1.0  
At4g02370.1 68417.m00321 expressed protein contains Pfam profile...    29   3.1  
At5g28980.1 68418.m03585 hypothetical protein contains Pfam prof...    27   7.1  
At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PG...    27   9.4  

>At4g28630.1 68417.m04093 ABC transporter family protein identical
           to half-molecule ABC transporter ATM1 GI:9964117 from
           [Arabidopsis thaliana]
          Length = 678

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 427 ILMFPERYDMSFFKRGLWRVLSGRQRLALPLALLKS 534
           I+ FP++Y  +  +RGL      +QR+AL  A LKS
Sbjct: 556 IMKFPDKYSTAVGERGLMLSGGEKQRVALARAFLKS 591


>At4g28620.1 68417.m04092 ABC transporter family protein identical
           to half-molecule ABC transporter ATM2 GI:9964119 from
           [Arabidopsis thaliana]
          Length = 680

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 427 ILMFPERYDMSFFKRGLWRVLSGRQRLALPLALLKS 534
           I+ FP++Y  +  +RGL      +QR+AL  A LKS
Sbjct: 558 IMKFPDKYSTAVGERGLMLSGGEKQRVALARAFLKS 593


>At4g02370.1 68417.m00321 expressed protein contains Pfam profile
           PF04398: Protein of unknown function, DUF538
          Length = 167

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 158 YNYQDTFNLLGKYEINYFQ*IEGILKNN 75
           +N   +FNL+G Y++NY   I G +  N
Sbjct: 66  FNDSCSFNLVGSYQLNYKSTISGYISEN 93


>At5g28980.1 68418.m03585 hypothetical protein contains Pfam profile
           PF02721: Domain of unknown function DUF223
          Length = 354

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 53  RLQNRYYYYFSKYPLFIENNLFHI 124
           R+  R YY FS+  LF +  +FHI
Sbjct: 317 RMYKRRYYKFSEVDLFADKLMFHI 340


>At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PGP1)
           identical to P-glycoprotein GI:3849833 from [Arabidopsis
           thaliana]; homologous to mammalian mdr gene,contains
           ATP-binding cassette; related to multi drug resistance
           proteins
          Length = 1286

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +1

Query: 415 SYTLILMFPERYDMSFFKRGLWRVLSGRQRLALPLALLKS 534
           +++ I+  P+ +D    +RGL      +QR+A+  A+LK+
Sbjct: 485 AHSFIIKLPDGFDTQVGERGLQLSGGQKQRIAIARAMLKN 524


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,148,481
Number of Sequences: 28952
Number of extensions: 201400
Number of successful extensions: 433
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)