Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30165
(771 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 76 3e-14
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 42 4e-04
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 40 0.002
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13) 38 0.007
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 38 0.009
SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17) 38 0.009
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 36 0.036
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 35 0.063
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34) 33 0.25
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.25
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.59
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 31 1.4
SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05) 30 1.8
SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0) 29 4.2
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 29 4.2
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 29 4.2
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 29 4.2
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0) 28 7.3
SB_56573| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 76.2 bits (179), Expect = 3e-14
Identities = 38/76 (50%), Positives = 48/76 (63%)
Frame = +2
Query: 26 IVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSA 205
+VIS+ + VT AG+ SYP DT+RRRMMM SG A + YK +I C I K EG +
Sbjct: 211 VVISFVLGYGVTVSAGLASYPIDTIRRRMMMTSGEA---VKYKGSIDCTIQILKKEGAMS 267
Query: 206 FFKGAFSNVLRGTGGA 253
KGA +N+LRG GA
Sbjct: 268 LMKGAGANILRGMAGA 283
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 113 MMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLR 238
M+++GR D YK I C + ++EG +F++G +N +R
Sbjct: 43 MLKAGRL--DHPYKGVIDCTSRTYRSEGFLSFWRGNLANCIR 82
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 54.4 bits (125), Expect = 1e-07
Identities = 26/75 (34%), Positives = 40/75 (53%)
Frame = +2
Query: 14 KNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTE 193
+ P+ V+ +YP D VRRRM M+ RA D YK+T+H +++I K E
Sbjct: 157 RELPVNFKLMCGSLAGAVSQTATYPLDVVRRRMQMKGIRA--DFAYKSTLHAFSSIVKLE 214
Query: 194 GTSAFFKGAFSNVLR 238
G +KG + N+L+
Sbjct: 215 GFRGLYKGMWPNILK 229
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/72 (33%), Positives = 34/72 (47%)
Frame = +2
Query: 23 PIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTS 202
P+V VA +YP D VRRRM M+ G Y +T + I ++EG
Sbjct: 680 PVVAKLFCGAVAGAVAQSGTYPLDVVRRRMQMERGEGM--FKYSSTWDGFKVIVRSEGFI 737
Query: 203 AFFKGAFSNVLR 238
FKG + N+L+
Sbjct: 738 GLFKGMWPNLLK 749
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 40.3 bits (90), Expect = 0.002
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +2
Query: 83 YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVL 235
YP D V+ RM Q +++ +YKN+I C+ + + EG ++G +L
Sbjct: 932 YPIDLVKTRMQNQRAVLEAEKVYKNSIDCFFKVVRNEGPIGLYRGLLPQLL 982
>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
Length = 577
Score = 38.3 bits (85), Expect = 0.007
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +2
Query: 38 WAIAQTVTTVAGIIS-YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFK 214
W++ T +T+ +++ YP + ++ R+ +Q KS+ YK H TI + EG A +K
Sbjct: 424 WSLVGTSSTLIAMVTVYPCEVIKTRLTVQHVN-KSNAHYKGMRHALKTILREEGILALYK 482
Query: 215 GAFSNVL 235
G + L
Sbjct: 483 GVTPSFL 489
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 37.9 bits (84), Expect = 0.009
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = +2
Query: 2 LPDPKNTPIVISWA-IAQTVTTVAGIIS-YPFDTVRRRMMMQSGRAKSDILYKNTIHCWA 175
L DP N + S + +A T +T+ +++ YP + ++ R+ +Q KS+ YK H
Sbjct: 142 LEDPHNGELSDSGSMLAGTSSTLIAMVTVYPCEVIKTRLTVQHVN-KSNAHYKGMRHALK 200
Query: 176 TIAKTEGTSAFFKGAFSNVL 235
TI + EG A +KG + L
Sbjct: 201 TILREEGILALYKGVTPSFL 220
>SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17)
Length = 187
Score = 37.9 bits (84), Expect = 0.009
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +2
Query: 38 WAIAQTVTTVAGIISYPFDTVRRRMMMQS---GRAKSDILYKNTIHCWATIAKTEGTSAF 208
+ + T + A + P + V+ RM +Q R + Y+N H TIAK EG A
Sbjct: 8 FVLGATAASGACFFTNPLEVVKTRMQLQGELKSRGTYSVYYRNVFHASYTIAKYEGILAM 67
Query: 209 FKGAF 223
KG F
Sbjct: 68 QKGLF 72
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 35.9 bits (79), Expect = 0.036
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 65 VAGIISYPFDTVRRRMMMQSGRAKSD--ILYKNTIHCWATIAKTEGTSAFFKGAFSNVLR 238
V I P D + +M +Q RA+S I Y+N H TIA+T G ++G + ++R
Sbjct: 214 VVAFIEGPIDLFKSKMQVQIIRAQSGAPIQYRNVFHAGYTIAQTYGIRGCYQGLSATLVR 273
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 35.1 bits (77), Expect = 0.063
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 68 AGIISYPFDTVRRRMM-MQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVL 235
A ++ +P DT++ R+ M + +YKN+ C+ I + EG F+G +L
Sbjct: 52 ANLVGFPLDTIKVRLQAMPLPKPGEPWMYKNSFDCFFKIIRNEGVYYLFRGVTVPIL 108
>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
Length = 302
Score = 33.1 bits (72), Expect = 0.25
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +2
Query: 68 AGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVL 235
A + P D ++ R+ + + R + + Y I C I EG +AF+KGA ++
Sbjct: 219 ASVAVNPLDVIKTRLQLLN-RPQGEPNYNGIIDCAKKIYSNEGLAAFYKGAVPRMI 273
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 33.1 bits (72), Expect = 0.25
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = +2
Query: 68 AGIIS----YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVL 235
AG++S +PFD ++ R+ K YK + C K EG F +G + +L
Sbjct: 142 AGVVSWASTFPFDVIKSRIQADGNLGK--FRYKGMMDCALQSYKEEGMIVFTRGIWPTLL 199
Query: 236 RG 241
RG
Sbjct: 200 RG 201
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 31.9 bits (69), Expect = 0.59
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 65 VAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEG-TSAFFKGAFSNVLR 238
V+ I+YP D VRRRM + +G Y I+ + K +G ++G N LR
Sbjct: 185 VSQTIAYPLDVVRRRMQL-AGAVPDGHKYNTCINTLVNVYKDDGIRRGLYRGLSINYLR 242
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +2
Query: 80 SYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVL 235
+YP D VR R+ Q + + TI C + K G A +KG +L
Sbjct: 82 TYPLDMVRSRLAFQVAQDQGYTTITQTIRCIS--VKEGGPKALYKGFVPTLL 131
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +2
Query: 62 TVAGIISYPFDTVRRRMMM--QSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVL 235
T++ I++YP D V+ ++ K Y C I + G SAF +G + +L
Sbjct: 369 TLSWILTYPVDMVKSCYQADGRTNSGKPQYKYNGYADCVKKIYISGGVSAFGQGLLATIL 428
Query: 236 RG 241
RG
Sbjct: 429 RG 430
>SB_41780| Best HMM Match : Mito_carr (HMM E-Value=3.9e-05)
Length = 383
Score = 30.3 bits (65), Expect = 1.8
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Frame = +2
Query: 65 VAGIISYPFDTVRRRMMMQSGRAKSDIL------------YKNTIHCWATIAKTEGTSAF 208
V +I YPF+TV R+ +Q R D L Y + + C+ TI + EG F
Sbjct: 287 VPDLILYPFETVLHRLYIQGTRTIIDDLDNAADVIPLSTNYFSMLDCFRTIYQQEGIFGF 346
Query: 209 FKG 217
++G
Sbjct: 347 YRG 349
>SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 200
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 77 ISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEG-TSAFFKGAFSNVLR 238
++YP D VRRRM + +G Y I+ + ++ +G ++G N LR
Sbjct: 123 LAYPLDVVRRRMQL-AGTVADGHKYSTCINTFISVYTEDGIRRGLYRGLSINYLR 176
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +2
Query: 65 VAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLR 238
+ I+ P D V+ R Q+ + I YKN H + IAK EG + G V R
Sbjct: 127 IGSAIATPTDLVKIRF--QAVKIGETIPYKNMFHAFYKIAKKEGFLGLWTGMKPTVKR 182
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +2
Query: 44 IAQTVTTVAGIIS-YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGA 220
IA +V V G+ + P DT++ R+ G D+L A KTEG +KG
Sbjct: 74 IAGSVGGVTGVTAGQPLDTIKVRLQASFGAGPLDML--------ARTVKTEGVRGLYKGM 125
Query: 221 FSNVL 235
+ VL
Sbjct: 126 LAPVL 130
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Frame = +2
Query: 26 IVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSG-----------RAKSDILYKNTIHCW 172
I++ + A ++A + P DT + R+ +Q R D Y+ +
Sbjct: 14 ILVKFCSAGIAASIAEAATIPIDTAKVRLQIQGESAVMASIAQGVRTTHDAHYRGMLGTM 73
Query: 173 ATIAKTEGTSAFFKGAFSNVLR 238
T+ KTEG +KG + R
Sbjct: 74 VTLFKTEGMKTMYKGLIPGIHR 95
>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 203
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 86 PFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFK 214
P + +++R+ M Y+ IHC ++ K EG AF++
Sbjct: 17 PIEVIKQRLQMYGSP------YRGVIHCATSVFKEEGIRAFYR 53
>SB_56573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -1
Query: 261 EHEAPPVPLRTLEKAPLKKAEVPSVLAMVAQQW 163
+ EAPP+P+R + P K PS++ +++ +
Sbjct: 439 DSEAPPIPVRKTSEIPQTKTHGPSLVKELSESF 471
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,927,332
Number of Sequences: 59808
Number of extensions: 371769
Number of successful extensions: 735
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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