Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30165
         (771 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   159   3e-41
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   159   3e-41
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.6  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  159 bits (386), Expect = 3e-41
 Identities = 71/84 (84%), Positives = 78/84 (92%)
 Frame = +2

Query: 2   LPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATI 181
           LPDPK TP +ISW IAQ VTTVAGI+SYPFDTVRRRMMMQSGRAKS+ILYK+T+HCWATI
Sbjct: 204 LPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATI 263

Query: 182 AKTEGTSAFFKGAFSNVLRGTGGA 253
            KTEG +AFFKGAFSN+LRGTGGA
Sbjct: 264 YKTEGGNAFFKGAFSNILRGTGGA 287



 Score = 31.9 bits (69), Expect = 0.007
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +2

Query: 41  AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSAFFK 214
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G  ++++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 215 GAFSNVLR 238
           G  +NV+R
Sbjct: 75  GNLANVIR 82



 Score = 28.7 bits (61), Expect = 0.063
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 83  YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKG 217
           YP D  R R+    G+A  +  +    +C   I K +G +  ++G
Sbjct: 134 YPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRG 178



 Score = 25.0 bits (52), Expect = 0.78
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +1

Query: 253 LVLVLYDEIKKVL 291
           LVLVLYDEIK +L
Sbjct: 288 LVLVLYDEIKNLL 300


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  159 bits (386), Expect = 3e-41
 Identities = 71/84 (84%), Positives = 78/84 (92%)
 Frame = +2

Query: 2   LPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATI 181
           LPDPK TP +ISW IAQ VTTVAGI+SYPFDTVRRRMMMQSGRAKS+ILYK+T+HCWATI
Sbjct: 204 LPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKSTLHCWATI 263

Query: 182 AKTEGTSAFFKGAFSNVLRGTGGA 253
            KTEG +AFFKGAFSN+LRGTGGA
Sbjct: 264 YKTEGGNAFFKGAFSNILRGTGGA 287



 Score = 31.9 bits (69), Expect = 0.007
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +2

Query: 41  AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSAFFK 214
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G  ++++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 215 GAFSNVLR 238
           G  +NV+R
Sbjct: 75  GNLANVIR 82



 Score = 28.7 bits (61), Expect = 0.063
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 83  YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKG 217
           YP D  R R+    G+A  +  +    +C   I K +G +  ++G
Sbjct: 134 YPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRG 178



 Score = 25.0 bits (52), Expect = 0.78
 Identities = 11/13 (84%), Positives = 12/13 (92%)
 Frame = +1

Query: 253 LVLVLYDEIKKVL 291
           LVLVLYDEIK +L
Sbjct: 288 LVLVLYDEIKNLL 300


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 330 DSVSQPLPSNHVLLDTKTTLVTYF*LNKVLYNDSIIYCFI 449
           D+V+Q   S  + L     L +Y   N  +Y D++I C +
Sbjct: 282 DAVTQIFFSYALGLGALVALGSYNKFNNNVYKDALIVCTV 321


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 330 DSVSQPLPSNHVLLDTKTTLVTYF*LNKVLYNDSIIYCFI 449
           D+V+Q   S  + L     L +Y   N  +Y D++I C +
Sbjct: 335 DAVTQIFFSYALGLGALVALGSYNKFNNNVYKDALIVCTV 374


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,358
Number of Sequences: 438
Number of extensions: 3575
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)