Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30164
(661 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 197 6e-51
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 194 4e-50
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 189 1e-48
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 68 5e-12
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 64 8e-11
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 63 1e-10
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 60 1e-09
At1g15440.2 68414.m01856 transducin family protein / WD-40 repea... 59 3e-09
At1g15440.1 68414.m01855 transducin family protein / WD-40 repea... 59 3e-09
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 57 9e-09
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 56 2e-08
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 56 3e-08
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 54 6e-08
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 54 6e-08
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 54 6e-08
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 54 1e-07
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 53 1e-07
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 53 2e-07
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 53 2e-07
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 53 2e-07
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 53 2e-07
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 52 4e-07
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 51 6e-07
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 51 6e-07
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 51 6e-07
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 51 6e-07
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 51 6e-07
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 51 6e-07
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 51 8e-07
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 50 1e-06
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 50 1e-06
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 50 1e-06
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 50 2e-06
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea... 49 2e-06
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 49 2e-06
At3g49180.1 68416.m05375 transducin family protein / WD-40 repea... 48 4e-06
At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pf... 48 6e-06
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 48 6e-06
At2g33340.2 68415.m04087 transducin family protein / WD-40 repea... 48 7e-06
At2g33340.1 68415.m04086 transducin family protein / WD-40 repea... 48 7e-06
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf... 48 7e-06
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf... 48 7e-06
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 48 7e-06
At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1) ide... 47 1e-05
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 47 1e-05
At3g18950.1 68416.m02405 transducin family protein / WD-40 repea... 47 1e-05
At1g49450.1 68414.m05543 transducin family protein / WD-40 repea... 47 1e-05
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 46 2e-05
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 46 2e-05
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 46 2e-05
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 46 2e-05
At4g04940.1 68417.m00718 transducin family protein / WD-40 repea... 46 2e-05
At4g05410.1 68417.m00823 transducin family protein / WD-40 repea... 46 3e-05
At3g53390.1 68416.m05892 transducin family protein / WD-40 repea... 45 4e-05
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 45 4e-05
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 45 4e-05
At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6 ... 45 4e-05
At2g26490.1 68415.m03178 transducin family protein / WD-40 repea... 45 4e-05
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 45 5e-05
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 45 5e-05
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 45 5e-05
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 45 5e-05
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 45 5e-05
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 45 5e-05
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 45 5e-05
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 44 7e-05
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 44 7e-05
At5g66240.2 68418.m08345 transducin family protein / WD-40 repea... 44 9e-05
At5g66240.1 68418.m08344 transducin family protein / WD-40 repea... 44 9e-05
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 44 9e-05
At2g37160.1 68415.m04559 transducin family protein / WD-40 repea... 44 9e-05
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 44 1e-04
At5g43920.1 68418.m05372 transducin family protein / WD-40 repea... 43 2e-04
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf... 43 2e-04
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 43 2e-04
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 43 2e-04
At4g18905.1 68417.m02787 transducin family protein / WD-40 repea... 43 2e-04
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec... 43 2e-04
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 42 3e-04
At3g18860.2 68416.m02396 transducin family protein / WD-40 repea... 42 3e-04
At3g18860.1 68416.m02395 transducin family protein / WD-40 repea... 42 3e-04
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 42 4e-04
At5g50120.1 68418.m06207 transducin family protein / WD-40 repea... 41 6e-04
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 41 6e-04
At4g34380.1 68417.m04884 transducin family protein / WD-40 repea... 41 8e-04
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 41 8e-04
At3g50390.1 68416.m05512 transducin family protein / WD-40 repea... 40 0.001
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 40 0.001
At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochro... 40 0.001
At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochro... 40 0.001
At4g03020.1 68417.m00410 transducin family protein / WD-40 repea... 40 0.001
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 40 0.002
At3g51930.1 68416.m05696 transducin family protein / WD-40 repea... 40 0.002
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 40 0.002
At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6 ... 39 0.003
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 39 0.003
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 39 0.003
At2g47790.1 68415.m05965 transducin family protein / WD-40 repea... 39 0.003
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 39 0.003
At1g24530.1 68414.m03088 transducin family protein / WD-40 repea... 39 0.003
At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4 pro... 39 0.003
At5g60940.2 68418.m07645 transducin family protein / WD-40 repea... 38 0.004
At5g60940.1 68418.m07644 transducin family protein / WD-40 repea... 38 0.004
At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6 ... 38 0.004
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 38 0.004
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 38 0.006
At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel... 38 0.006
At1g80710.1 68414.m09470 transducin family protein / WD-40 repea... 38 0.006
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea... 38 0.008
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 37 0.010
At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3 pro... 37 0.010
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ... 37 0.010
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ... 37 0.010
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 37 0.010
At1g24130.1 68414.m03044 transducin family protein / WD-40 repea... 37 0.010
At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 ... 37 0.014
At2g16405.1 68415.m01878 transducin family protein / WD-40 repea... 37 0.014
At1g80670.1 68414.m09466 transducin family protein / WD-40 repea... 37 0.014
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ... 36 0.018
At5g64630.3 68418.m08123 transducin family protein / WD-40 repea... 36 0.024
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 36 0.024
At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5 ... 36 0.024
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 36 0.024
At4g28450.1 68417.m04071 transducin family protein / WD-40 repea... 36 0.024
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 36 0.024
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 36 0.024
At5g10940.1 68418.m01269 transducin family protein / WD-40 repea... 36 0.032
At4g35140.1 68417.m04996 transducin family protein / WD-40 repea... 36 0.032
At3g45620.1 68416.m04927 transducin family protein / WD-40 repea... 36 0.032
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 36 0.032
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 36 0.032
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea... 35 0.042
At5g64630.1 68418.m08121 transducin family protein / WD-40 repea... 35 0.042
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 35 0.042
At2g19430.1 68415.m02267 transducin family protein / WD-40 repea... 35 0.042
At1g47610.1 68414.m05288 transducin family protein / WD-40 repea... 35 0.042
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea... 35 0.055
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 35 0.055
At5g14530.1 68418.m01703 transducin family protein / WD-40 repea... 35 0.055
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf... 35 0.055
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf... 35 0.055
At4g38480.1 68417.m05438 transducin family protein / WD-40 repea... 34 0.073
At3g13300.2 68416.m01675 transducin family protein / WD-40 repea... 34 0.073
At3g13300.1 68416.m01674 transducin family protein / WD-40 repea... 34 0.073
At3g01340.1 68416.m00051 protein transport protein SEC13 family ... 34 0.073
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 34 0.073
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 34 0.073
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 34 0.073
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 34 0.073
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 34 0.096
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 34 0.096
At2g30050.1 68415.m03654 transducin family protein / WD-40 repea... 34 0.096
At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat fam... 33 0.13
At3g06880.1 68416.m00817 transducin family protein / WD-40 repea... 33 0.13
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea... 33 0.17
At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5 ... 33 0.17
At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5 ... 33 0.17
At1g76260.1 68414.m08855 transducin family protein / WD-40 repea... 33 0.17
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea... 33 0.17
At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5 ... 33 0.22
At3g20740.1 68416.m02624 fertilization-independent endosperm pro... 33 0.22
At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochro... 33 0.22
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 33 0.22
At1g52730.2 68414.m05959 transducin family protein / WD-40 repea... 33 0.22
At1g52730.1 68414.m05958 transducin family protein / WD-40 repea... 33 0.22
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 33 0.22
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 33 0.22
At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pf... 32 0.29
At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5 ... 32 0.29
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 32 0.29
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea... 32 0.39
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 31 0.51
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel... 31 0.51
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 31 0.51
At1g03110.1 68414.m00288 transducin family protein / WD-40 repea... 31 0.51
At5g45760.2 68418.m05626 transducin family protein / WD-40 repea... 31 0.68
At5g45760.1 68418.m05625 transducin family protein / WD-40 repea... 31 0.68
At4g11270.1 68417.m01823 transducin family protein / WD-40 repea... 31 0.68
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 31 0.68
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 31 0.68
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ... 31 0.90
At4g21130.1 68417.m03055 transducin family protein / WD-40 repea... 31 0.90
At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 ... 30 1.2
At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 ... 30 1.2
At4g34280.1 68417.m04873 transducin family protein / WD-40 repea... 30 1.2
At4g29380.1 68417.m04197 protein kinase family protein / WD-40 r... 30 1.2
At3g13290.1 68416.m01673 transducin family protein / WD-40 repea... 30 1.2
At1g15850.1 68414.m01902 transducin family protein / WD-40 repea... 30 1.2
At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4 ... 30 1.6
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME... 29 2.1
At2g25420.1 68415.m03045 transducin family protein / WD-40 repea... 29 2.1
At1g19750.1 68414.m02469 transducin family protein / WD-40 repea... 29 2.1
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea... 29 2.1
At5g60050.1 68418.m07530 PRLI-interacting factor-related contain... 29 2.7
At1g15470.1 68414.m01860 transducin family protein / WD-40 repea... 29 2.7
At5g05970.1 68418.m00661 transducin family protein / WD-40 repea... 29 3.6
At1g78070.2 68414.m09098 WD-40 repeat family protein contains Pf... 29 3.6
At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10... 28 4.8
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 28 4.8
At1g27470.1 68414.m03349 transducin-related / WD-40 repeat prote... 28 4.8
At4g01860.2 68417.m00244 transducin family protein / WD-40 repea... 28 6.3
At4g01860.1 68417.m00243 transducin family protein / WD-40 repea... 28 6.3
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica... 28 6.3
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica... 28 6.3
At2g40060.1 68415.m04922 expressed protein 28 6.3
At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 ... 28 6.3
At4g07410.1 68417.m01136 transducin family protein / WD-40 repea... 27 8.4
At4g03970.1 68417.m00561 Ulp1 protease family protein contains P... 27 8.4
At3g27670.1 68416.m03455 expressed protein 27 8.4
At1g78690.1 68414.m09172 phospholipid/glycerol acyltransferase f... 27 8.4
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 197 bits (480), Expect = 6e-51
Identities = 93/135 (68%), Positives = 104/135 (77%), Gaps = 1/135 (0%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
+ALSGSWD LRLWDLA G+TTRRF HTKDVLSVAFS DNRQIVS SRD+TIKLWNTL
Sbjct: 77 FALSGSWDGELRLWDLATGETTRRFVGHTKDVLSVAFSTDNRQIVSASRDRTIKLWNTLG 136
Query: 440 ECKYTIQD-DGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHLGHSGYL 616
ECKYTI + DGH +WVSCVRFSPN P + + + NCKL+ + +GHSGYL
Sbjct: 137 ECKYTISEGDGHKEWVSCVRFSPNTLVPTIVSASWDKTVKVWNLQNCKLRNSLVGHSGYL 196
Query: 617 NTVTVSPDGSLCASG 661
NTV VSPDGSLCASG
Sbjct: 197 NTVAVSPDGSLCASG 211
Score = 92.3 bits (219), Expect = 3e-19
Identities = 41/74 (55%), Positives = 57/74 (77%)
Frame = +3
Query: 33 MSETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLY 212
M+E L L+G +R H VT IAT D+I+++SRDK++I+WKLT+D+ +YG+ Q+RL
Sbjct: 1 MAEGLVLKGIMRAHTDIVTAIATPIDNSDIIVTASRDKSIILWKLTKDDKSYGVAQRRLT 60
Query: 213 GHSHFISDVVLSSD 254
GHSHF+ DVVLSSD
Sbjct: 61 GHSHFVEDVVLSSD 74
Score = 46.4 bits (105), Expect = 2e-05
Identities = 29/81 (35%), Positives = 42/81 (51%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAEC 445
+S SWDKT+++W+L K H+ + +VA S D SG +D I LW+ LAE
Sbjct: 167 VSASWDKTVKVWNLQNCKLRNSLVGHSGYLNTVAVSPDGSLCASGGKDGVILLWD-LAEG 225
Query: 446 KYTIQDDGHSDWVSCVRFSPN 508
K + S + + FSPN
Sbjct: 226 KKLYSLEAGS-IIHSLCFSPN 245
Score = 39.1 bits (87), Expect = 0.003
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Frame = +2
Query: 266 LSGSWDKTLRLW-----DLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
++ S DK++ LW D + G RR H+ V V S D + +SGS D ++LW+
Sbjct: 32 VTASRDKSIILWKLTKDDKSYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWD 91
Query: 431 TLAECKYTIQDDGHSDWVSCVRFS 502
LA + T + GH+ V V FS
Sbjct: 92 -LATGETTRRFVGHTKDVLSVAFS 114
Score = 34.7 bits (76), Expect = 0.055
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +3
Query: 39 ETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGI 194
+ KLR +L GH+G++ +A +P + S +D +++W L + Y +
Sbjct: 181 QNCKLRNSLVGHSGYLNTVAVSPD-GSLCASGGKDGVILLWDLAEGKKLYSL 231
Score = 34.3 bits (75), Expect = 0.073
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 69 GHNGWVTQIATNPK-YPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDVVL 245
GH WV+ + +P I+S+S DKT+ VW L N + + L GHS +++ V +
Sbjct: 147 GHKEWVSCVRFSPNTLVPTIVSASWDKTVKVWNL----QNCKL-RNSLVGHSGYLNTVAV 201
Query: 246 SSD 254
S D
Sbjct: 202 SPD 204
Score = 32.7 bits (71), Expect = 0.22
Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +2
Query: 341 HTKDVLSVAFSVDNRQI-VSGSRDKTIKLWNTLAECK-YTIQD---DGHSDWVSCVRFS 502
HT V ++A +DN I V+ SRDK+I LW + K Y + GHS +V V S
Sbjct: 14 HTDIVTAIATPIDNSDIIVTASRDKSIILWKLTKDDKSYGVAQRRLTGHSHFVEDVVLS 72
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 194 bits (473), Expect = 4e-50
Identities = 92/135 (68%), Positives = 102/135 (75%), Gaps = 1/135 (0%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
+ALSGSWD LRLWDLA G++TRRF HTKDVLSVAFS DNRQIVS SRD+TIKLWNTL
Sbjct: 77 FALSGSWDGELRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSASRDRTIKLWNTLG 136
Query: 440 ECKYTIQD-DGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHLGHSGYL 616
ECKYTI + DGH +WVSCVRFSPN P + + + NCKL+ GHSGYL
Sbjct: 137 ECKYTISEADGHKEWVSCVRFSPNTLVPTIVSASWDKTVKVWNLQNCKLRNTLAGHSGYL 196
Query: 617 NTVTVSPDGSLCASG 661
NTV VSPDGSLCASG
Sbjct: 197 NTVAVSPDGSLCASG 211
Score = 91.5 bits (217), Expect = 5e-19
Identities = 40/74 (54%), Positives = 57/74 (77%)
Frame = +3
Query: 33 MSETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLY 212
M+E L L+GT+ H VT IAT D+I++SSRDK++I+WKLT+++ +YG+ Q+R+
Sbjct: 1 MAEGLVLKGTMCAHTDMVTAIATPVDNSDVIVTSSRDKSIILWKLTKEDKSYGVAQRRMT 60
Query: 213 GHSHFISDVVLSSD 254
GHSHF+ DVVLSSD
Sbjct: 61 GHSHFVQDVVLSSD 74
Score = 46.8 bits (106), Expect = 1e-05
Identities = 29/81 (35%), Positives = 42/81 (51%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAEC 445
+S SWDKT+++W+L K H+ + +VA S D SG +D I LW+ LAE
Sbjct: 167 VSASWDKTVKVWNLQNCKLRNTLAGHSGYLNTVAVSPDGSLCASGGKDGVILLWD-LAEG 225
Query: 446 KYTIQDDGHSDWVSCVRFSPN 508
K + S + + FSPN
Sbjct: 226 KKLYSLEAGS-IIHSLCFSPN 245
Score = 39.9 bits (89), Expect = 0.001
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 6/131 (4%)
Frame = +2
Query: 266 LSGSWDKTLRLW-----DLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
++ S DK++ LW D + G RR H+ V V S D + +SGS D ++LW+
Sbjct: 32 VTSSRDKSIILWKLTKEDKSYGVAQRRMTGHSHFVQDVVLSSDGQFALSGSWDGELRLWD 91
Query: 431 TLAECKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHL-GHS 607
LA + T + GH+ V V FS + ++ + CK I+ GH
Sbjct: 92 -LATGESTRRFVGHTKDVLSVAFSTD-NRQIVSASRDRTIKLWNTLGECKYTISEADGHK 149
Query: 608 GYLNTVTVSPD 640
+++ V SP+
Sbjct: 150 EWVSCVRFSPN 160
Score = 37.1 bits (82), Expect = 0.010
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +3
Query: 39 ETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGI 194
+ KLR TL GH+G++ +A +P + S +D +++W L + Y +
Sbjct: 181 QNCKLRNTLAGHSGYLNTVAVSPD-GSLCASGGKDGVILLWDLAEGKKLYSL 231
Score = 34.3 bits (75), Expect = 0.073
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +2
Query: 341 HTKDVLSVAFSVDNRQ-IVSGSRDKTIKLWNTLAECK-YTIQD---DGHSDWVSCVRFS 502
HT V ++A VDN IV+ SRDK+I LW E K Y + GHS +V V S
Sbjct: 14 HTDMVTAIATPVDNSDVIVTSSRDKSIILWKLTKEDKSYGVAQRRMTGHSHFVQDVVLS 72
Score = 33.9 bits (74), Expect = 0.096
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 69 GHNGWVTQIATNPK-YPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDVVL 245
GH WV+ + +P I+S+S DKT+ VW L N + + L GHS +++ V +
Sbjct: 147 GHKEWVSCVRFSPNTLVPTIVSASWDKTVKVWNL----QNCKL-RNTLAGHSGYLNTVAV 201
Query: 246 SSD 254
S D
Sbjct: 202 SPD 204
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 189 bits (461), Expect = 1e-48
Identities = 90/136 (66%), Positives = 103/136 (75%), Gaps = 2/136 (1%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
+ALSGSWD LRLWDLAAG +TRRF HTKDVLSVAFS+DNRQIVS SRD+TIKLWNTL
Sbjct: 77 FALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG 136
Query: 440 ECKYTIQD--DGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHLGHSGY 613
ECKYTI + +GH DWVSCVRFSPN P + + + NCKL+ GH+GY
Sbjct: 137 ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGY 196
Query: 614 LNTVTVSPDGSLCASG 661
++TV VSPDGSLCASG
Sbjct: 197 VSTVAVSPDGSLCASG 212
Score = 95.5 bits (227), Expect = 3e-20
Identities = 43/74 (58%), Positives = 57/74 (77%)
Frame = +3
Query: 33 MSETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLY 212
M+E L L+GT+R H VT IAT D+I+S+SRDK++I+WKLT+D+ YG+ Q+RL
Sbjct: 1 MAEGLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT 60
Query: 213 GHSHFISDVVLSSD 254
GHSHF+ DVVLSSD
Sbjct: 61 GHSHFVEDVVLSSD 74
Score = 51.6 bits (118), Expect = 4e-07
Identities = 30/81 (37%), Positives = 44/81 (54%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAEC 445
+S SWDKT+++W+L+ K HT V +VA S D SG +D + LW+ LAE
Sbjct: 168 VSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWD-LAEG 226
Query: 446 KYTIQDDGHSDWVSCVRFSPN 508
K + +S + + FSPN
Sbjct: 227 KKLYSLEANS-VIHALCFSPN 246
Score = 40.3 bits (90), Expect = 0.001
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Frame = +2
Query: 266 LSGSWDKTLRLW-----DLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
+S S DK++ LW D A G RR H+ V V S D + +SGS D ++LW+
Sbjct: 32 VSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWD 91
Query: 431 TLAECKYTIQDDGHSDWVSCVRFS 502
LA T + GH+ V V FS
Sbjct: 92 -LAAGVSTRRFVGHTKDVLSVAFS 114
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 48 KLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGI 194
KLR TL GH G+V+ +A +P + S +D +++W L + Y +
Sbjct: 185 KLRSTLAGHTGYVSTVAVSPD-GSLCASGGKDGVVLLWDLAEGKKLYSL 232
Score = 35.5 bits (78), Expect = 0.032
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 69 GHNGWVTQIATNPK-YPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDVVL 245
GH WV+ + +P I+S+S DKT+ VW L+ + + L GH+ ++S V +
Sbjct: 148 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK-----LRSTLAGHTGYVSTVAV 202
Query: 246 SSD 254
S D
Sbjct: 203 SPD 205
Score = 33.9 bits (74), Expect = 0.096
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +2
Query: 341 HTKDVLSVAFSVDNRQI-VSGSRDKTIKLWNTLAECK-YTIQD---DGHSDWVSCVRFS 502
HT V ++A +DN I VS SRDK+I LW + K Y + GHS +V V S
Sbjct: 14 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS 72
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 68.1 bits (159), Expect = 5e-12
Identities = 42/125 (33%), Positives = 67/125 (53%), Gaps = 1/125 (0%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTL 436
N +SGS+D+T+R+W++ GK R + H+ + SV F+ D IVS S D + K+W+
Sbjct: 141 NLIVSGSFDETIRIWEVKTGKCVRMIKAHSMPISSVHFNRDGSLIVSASHDGSCKIWDAK 200
Query: 437 -AECKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHLGHSGY 613
C T+ DD S VS +FSPN +L + + L S + LK+ + GH+
Sbjct: 201 EGTCLKTLIDD-KSPAVSFAKFSPNGKF-ILVATLDSTLKLSNYATGKFLKV-YTGHTNK 257
Query: 614 LNTVT 628
+ +T
Sbjct: 258 VFCIT 262
Score = 57.6 bits (133), Expect = 7e-09
Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTL 436
N S S DKT+ LW R+E H+ + +A+S D+ S S D T+++W+
Sbjct: 56 NLLASASVDKTMILWSATNYSLIHRYEGHSSGISDLAWSSDSHYTCSASDDCTLRIWDAR 115
Query: 437 A--ECKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHLGHSG 610
+ EC ++ GH+++V CV F+P P+ L+ E R K HS
Sbjct: 116 SPYECLKVLR--GHTNFVFCVNFNP--PSNLIVSGSFDETIRIWEVKTGKCVRMIKAHSM 171
Query: 611 YLNTVTVSPDGSLCAS 658
+++V + DGSL S
Sbjct: 172 PISSVHFNRDGSLIVS 187
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVA-FSVDNRQIVSGSR-DKTIKLW 427
Y +SGS D + LWDL A +R E HT V+SV+ V N SG+ DKTI++W
Sbjct: 272 YIVSGSEDNCVYLWDLQARNILQRLEGHTDAVISVSCHPVQNEISSSGNHLDKTIRIW 329
Score = 46.4 bits (105), Expect = 2e-05
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSV--AFSVDN-RQIVSGSRDKTIKLWN 430
+ L + D TL+L + A GK + + HT V + AFSV N + IVSGS D + LW+
Sbjct: 227 FILVATLDSTLKLSNYATGKFLKVYTGHTNKVFCITSAFSVTNGKYIVSGSEDNCVYLWD 286
Query: 431 TLAECKYTIQDDGHSDWVSCVRFSP 505
A + +GH+D V V P
Sbjct: 287 LQAR-NILQRLEGHTDAVISVSCHP 310
Score = 39.9 bits (89), Expect = 0.001
Identities = 32/97 (32%), Positives = 49/97 (50%)
Frame = +3
Query: 60 TLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDV 239
TL GH ++ + + +++ S+S DKT+I+W T NY + R GHS ISD+
Sbjct: 38 TLEGHTAAISCVKFSND-GNLLASASVDKTMILWSAT----NYSLIH-RYEGHSSGISDL 91
Query: 240 VLSSDVITHFPVLGTRLCVCGISLQARLPDDSRTILR 350
SSD +H+ + C I AR P + +LR
Sbjct: 92 AWSSD--SHYTCSASDDCTLRI-WDARSPYECLKVLR 125
Score = 34.3 bits (75), Expect = 0.073
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Frame = +2
Query: 326 RRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSCVRFSP 505
+ E HT + V FS D + S S DKT+ LW+ + +GHS +S + +S
Sbjct: 37 KTLEGHTAAISCVKFSNDGNLLASASVDKTMILWSA-TNYSLIHRYEGHSSGISDLAWSS 95
Query: 506 NMP-TPLLYPVVGTELSRSGISLNCKLKINHLGHSGYLNTVTVSPDGSLCASG 661
+ T + + C LK+ GH+ ++ V +P +L SG
Sbjct: 96 DSHYTCSASDDCTLRIWDARSPYEC-LKVLR-GHTNFVFCVNFNPPSNLIVSG 146
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 64.1 bits (149), Expect = 8e-11
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT- 433
N +SGS+D+T+R+WD+ GK + H+ V +V F+ D IVS S D ++W++
Sbjct: 126 NMIVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSG 185
Query: 434 LAECKYTIQDDGHSDWVSCVRFSPN 508
C T+ DD + VS VRFSPN
Sbjct: 186 TGHCVKTLIDDENPP-VSFVRFSPN 209
Score = 57.6 bits (133), Expect = 7e-09
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN-TL 436
+ +S S DKTL+LWD+ G + HT V F+ + IVSGS D+T+++W+ T
Sbjct: 85 FIVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFNPQSNMIVSGSFDETVRIWDVTT 144
Query: 437 AECKYTIQDDGHSDWVSCVRFS 502
+C + HSD V+ V F+
Sbjct: 145 GKCLKVL--PAHSDPVTAVDFN 164
Score = 50.4 bits (115), Expect = 1e-06
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAA-----GKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT 433
S S DKT+R + + + + F H + VAFS D R IVS S DKT+KLW+
Sbjct: 41 SASADKTIRTYTINTINDPIAEPVQEFTGHENGISDVAFSSDARFIVSASDDKTLKLWD- 99
Query: 434 LAECKYTIQD-DGHSDWVSCVRFSP 505
E I+ GH+++ CV F+P
Sbjct: 100 -VETGSLIKTLIGHTNYAFCVNFNP 123
Score = 50.4 bits (115), Expect = 1e-06
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDH--TKDVLSVAFSVDN-RQIVSGSRDKTIKLWN 430
+ L G+ D TLRLW++++ K + + H + +S AFSV N ++IVSGS D + +W
Sbjct: 212 FILVGTLDNTLRLWNISSAKFLKTYTGHVNAQYCISSAFSVTNGKRIVSGSEDNCVHMWE 271
Query: 431 TLAECKYTIQDDGHSDWVSCVRFSP 505
L K + +GH++ V V P
Sbjct: 272 -LNSKKLLQKLEGHTETVMNVACHP 295
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/59 (37%), Positives = 35/59 (59%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAE 442
+SGS D + +W+L + K ++ E HT+ V++VA I SGS DKT+++W E
Sbjct: 259 VSGSEDNCVHMWELNSKKLLQKLEGHTETVMNVACHPTENLIASGSLDKTVRIWTQKKE 317
Score = 33.9 bits (74), Expect = 0.096
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +3
Query: 60 TLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDV 239
TL HN V+ + + ++ S+S DKT+ + + + P + GH + ISDV
Sbjct: 19 TLTSHNRAVSSVKFSSD-GRLLASASADKTIRTYTINTINDPIAEPVQEFTGHENGISDV 77
Query: 240 VLSSD 254
SSD
Sbjct: 78 AFSSD 82
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +3
Query: 39 ETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLT 170
ET L TL GH + + NP+ +MI+S S D+T+ +W +T
Sbjct: 101 ETGSLIKTLIGHTNYAFCVNFNPQ-SNMIVSGSFDETVRIWDVT 143
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 63.3 bits (147), Expect = 1e-10
Identities = 34/83 (40%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN-T 433
NY +GS DKT+RLWD+ G+ R F H VLS+A S D R + SG D TI +W+ +
Sbjct: 512 NYIATGSSDKTVRLWDVQTGECVRIFIGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLS 571
Query: 434 LAECKYTIQDDGHSDWVSCVRFS 502
A C + GH+ V + +S
Sbjct: 572 TARCITPLM--GHNSCVWSLSYS 592
Score = 54.8 bits (126), Expect = 5e-08
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
Y SG D T+ +WDL+ + H V S+++S + + SGS D T+KLW+ +
Sbjct: 555 YMASGDEDGTIMMWDLSTARCITPLMGHNSCVWSLSYSGEGSLLASGSADCTVKLWDVTS 614
Query: 440 ECKYTIQDD--GHSDWVSCVRFSPNMPTPL 523
K T ++ G+S+ + +R P TP+
Sbjct: 615 STKLTKAEEKNGNSNRLRSLRTFPTKSTPV 644
Score = 44.8 bits (101), Expect = 5e-05
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT- 433
+Y S S D+T R+W + + R H D V + + I +GS DKT++LW+
Sbjct: 473 HYFASCSHDRTARIWSMDRIQPLRIMAGHLSD---VDWHPNCNYIATGSSDKTVRLWDVQ 529
Query: 434 LAECKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHLGHSGY 613
EC GH V + SP+ GT + + C + +GH+
Sbjct: 530 TGECVRIF--IGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPL--MGHNSC 585
Query: 614 LNTVTVSPDGSLCASG 661
+ +++ S +GSL ASG
Sbjct: 586 VWSLSYSGEGSLLASG 601
Score = 36.7 bits (81), Expect = 0.014
Identities = 36/138 (26%), Positives = 57/138 (41%), Gaps = 3/138 (2%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTL 436
++ LS S D T+RLW ++ H V FS S S D+T ++W+
Sbjct: 431 DFVLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDAQFSPFGHYFASCSHDRTARIWSMD 490
Query: 437 AECKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTE---LSRSGISLNCKLKINHLGHS 607
I GH +S V + PN Y G+ + + ++I +GH
Sbjct: 491 RIQPLRIM-AGH---LSDVDWHPNCN----YIATGSSDKTVRLWDVQTGECVRI-FIGHR 541
Query: 608 GYLNTVTVSPDGSLCASG 661
+ ++ +SPDG ASG
Sbjct: 542 SMVLSLAMSPDGRYMASG 559
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 63 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDEN 182
L GH+G V +P D +LSSS D T+ +W + N
Sbjct: 414 LLGHSGPVYSATFSPP-GDFVLSSSADTTIRLWSTKLNAN 452
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 60.5 bits (140), Expect = 1e-09
Identities = 32/81 (39%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECK 448
S S+DK++RLW+ G+ F H V V++S D+R ++SGS+D T+K+W K
Sbjct: 377 SASFDKSVRLWNGITGQFVTVFRGHVGPVYQVSWSADSRLLLSGSKDSTLKIWE--IRTK 434
Query: 449 YTIQD-DGHSDWVSCVRFSPN 508
QD GH+D V V +SP+
Sbjct: 435 KLKQDLPGHADEVFAVDWSPD 455
Score = 52.8 bits (121), Expect = 2e-07
Identities = 21/54 (38%), Positives = 34/54 (62%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW 427
LSGS D TL++W++ K + H +V +V +S D ++VSG +D+ +KLW
Sbjct: 418 LSGSKDSTLKIWEIRTKKLKQDLPGHADEVFAVDWSPDGEKVVSGGKDRVLKLW 471
Score = 51.6 bits (118), Expect = 4e-07
Identities = 28/79 (35%), Positives = 39/79 (49%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECK 448
SGS D T+RLWDL + H VL+VA+S D + +VSGS+ I WN
Sbjct: 126 SGSGDTTVRLWDLYTETPLFTCKGHKNWVLTVAWSPDGKHLVSGSKSGEICCWNPKKGEL 185
Query: 449 YTIQDDGHSDWVSCVRFSP 505
GH W++ + + P
Sbjct: 186 EGSPLTGHKKWITGISWEP 204
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Frame = +2
Query: 341 HTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECK-YTIQDDGHSDWVSCVRFSPN 508
H + VL V+FS D +Q+ SGS D T++LW+ E +T + GH +WV V +SP+
Sbjct: 108 HAEAVLCVSFSPDGKQLASGSGDTTVRLWDLYTETPLFTCK--GHKNWVLTVAWSPD 162
Score = 48.8 bits (111), Expect = 3e-06
Identities = 44/133 (33%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTR-RFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAE 442
+SGS D T+ LW+ + K + R H + V V FS D + I S S DK+++LWN +
Sbjct: 333 VSGSDDFTMFLWEPSVSKQPKKRLTGHQQLVNHVYFSPDGKWIASASFDKSVRLWNGITG 392
Query: 443 CKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHLGHSGYLNT 622
++ GH V V +S + LL + L I KLK + GH+ +
Sbjct: 393 -QFVTVFRGHVGPVYQVSWSADSRL-LLSGSKDSTLKIWEIRTK-KLKQDLPGHADEVFA 449
Query: 623 VTVSPDGSLCASG 661
V SPDG SG
Sbjct: 450 VDWSPDGEKVVSG 462
Score = 42.7 bits (96), Expect = 2e-04
Identities = 25/79 (31%), Positives = 39/79 (49%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAEC 445
++ S D R+WD+ K+ HT V V + D I +GS+D TIK+W T +
Sbjct: 215 VTSSKDGDARIWDITLKKSIICLSGHTLAVTCVKWGGDGI-IYTGSQDCTIKMWET-TQG 272
Query: 446 KYTIQDDGHSDWVSCVRFS 502
K + GH W++ + S
Sbjct: 273 KLIRELKGHGHWINSLALS 291
Score = 31.5 bits (68), Expect = 0.51
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 114 PDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDVVLSSD 254
P+ ++S S D T+ +W+ + + P+KRL GH ++ V S D
Sbjct: 329 PERLVSGSDDFTMFLWEPSVSKQ----PKKRLTGHQQLVNHVYFSPD 371
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +3
Query: 66 RGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIP 197
RGH G V Q++ + ++LS S+D TL +W++ + +P
Sbjct: 399 RGHVGPVYQVSWSAD-SRLLLSGSKDSTLKIWEIRTKKLKQDLP 441
Score = 27.9 bits (59), Expect = 6.3
Identities = 24/73 (32%), Positives = 31/73 (42%)
Frame = +2
Query: 443 CKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHLGHSGYLNT 622
C TI GH++ V CV FSP+ L T + + L GH ++ T
Sbjct: 101 CSQTIA--GHAEAVLCVSFSPD-GKQLASGSGDTTVRLWDLYTETPL-FTCKGHKNWVLT 156
Query: 623 VTVSPDGSLCASG 661
V SPDG SG
Sbjct: 157 VAWSPDGKHLVSG 169
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +3
Query: 60 TLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDV 239
T +GH WV +A +P ++ S S+ + W + E G P L GH +I+ +
Sbjct: 146 TCKGHKNWVLTVAWSPDGKHLV-SGSKSGEICCWNPKKGELE-GSP---LTGHKKWITGI 200
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +3
Query: 120 MILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDVVLSSDVI 260
+I + S+D T+ +W+ T+ G + L GH H+I+ + LS++ +
Sbjct: 254 IIYTGSQDCTIKMWETTQ-----GKLIRELKGHGHWINSLALSTEYV 295
>At1g15440.2 68414.m01856 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 860
Score = 58.8 bits (136), Expect = 3e-09
Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTL-AEC 445
S SWD T+RLWD+ A K T H DVL+VAF D +Q+ S + D I W+T+
Sbjct: 494 SSSWDYTVRLWDVFASKGTVETFRHNHDVLTVAFRPDGKQLASSTLDGQINFWDTIEGVL 553
Query: 446 KYTIQ 460
YTI+
Sbjct: 554 MYTIE 558
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/54 (29%), Positives = 32/54 (59%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
+G+ D +++W++ +G F +HT V ++ F DN ++S S D T++ W+
Sbjct: 366 TGADDNKVKVWNVMSGTCFITFTEHTNAVTALHFMADNHSLLSASLDGTVRAWD 419
>At1g15440.1 68414.m01855 transducin family protein / WD-40 repeat
family protein Strong similarity to gb X95263 Periodic
tryptophan protein 2 gene (PWP2) from Homo sapiens and
contains 6 WD40, G-beta repeat domains
Length = 900
Score = 58.8 bits (136), Expect = 3e-09
Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTL-AEC 445
S SWD T+RLWD+ A K T H DVL+VAF D +Q+ S + D I W+T+
Sbjct: 534 SSSWDYTVRLWDVFASKGTVETFRHNHDVLTVAFRPDGKQLASSTLDGQINFWDTIEGVL 593
Query: 446 KYTIQ 460
YTI+
Sbjct: 594 MYTIE 598
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/54 (29%), Positives = 32/54 (59%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
+G+ D +++W++ +G F +HT V ++ F DN ++S S D T++ W+
Sbjct: 406 TGADDNKVKVWNVMSGTCFITFTEHTNAVTALHFMADNHSLLSASLDGTVRAWD 459
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice sites
at introns 4 and 6
Length = 1017
Score = 57.2 bits (132), Expect = 9e-09
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Frame = +2
Query: 254 RNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS-VDNRQIVSGSRDKTIKLWN 430
RNY S +D ++LWD+ G+ F +H K SV FS ++ SGS D ++KLWN
Sbjct: 766 RNYLASSDYDGIVKLWDVTTGQAISHFIEHEKRAWSVDFSEACPTKLASGSDDCSVKLWN 825
Query: 431 -TLAECKYTIQDDGHSDWVSCVRFSP 505
C TI++ + V CV+FSP
Sbjct: 826 INERNCLGTIRNIAN---VCCVQFSP 848
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 341 HTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
H K V S A +DN +V+ S D T+KLW+
Sbjct: 881 HNKAV-SYAKFLDNETLVTASTDNTLKLWD 909
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 56.0 bits (129), Expect = 2e-08
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN-TLAE 442
++ S DKT+++W ++ G + FE HT VL +F D Q VS D +KLWN +E
Sbjct: 557 MTASGDKTVKIWAISDGSCLKTFEGHTSSVLRASFITDGTQFVSCGADGLLKLWNVNTSE 616
Query: 443 CKYTIQDDGHSDWV 484
C T D H D V
Sbjct: 617 CIATY--DQHEDKV 628
Score = 51.2 bits (117), Expect = 6e-07
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Frame = +2
Query: 254 RNYALSGSWDKTLRLWDLAAGKTTRR----FEDHTKDVLSVAFSVDNRQIVSGSRDKTIK 421
+N +SGS D T+R+WDL A T ++ E H V S+A S D + S RDK +
Sbjct: 158 KNILISGSDDATVRVWDLNAKNTEKKCLAIMEKHFSAVTSIALSEDGLTLFSAGRDKVVN 217
Query: 422 LWNTL-AECKYTI 457
LW+ CK T+
Sbjct: 218 LWDLHDYSCKATV 230
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQ-IVSGSRDKTIKLWN 430
++GS DKT+RLW+ + H D+L+VAF+ + VSGS D+T+K+W+
Sbjct: 420 VTGSKDKTVRLWNATSKSCIGVGTGHNGDILAVAFAKKSFSFFVSGSGDRTLKVWS 475
Score = 41.5 bits (93), Expect = 5e-04
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAG----------KTTRRFEDHTKDVLSVAFSVDNRQIVSGSR 406
++ +SGS D+TL++W L KT H KD+ SVA + ++ + +GS
Sbjct: 460 SFFVSGSGDRTLKVWSLDGISEDSEEPINLKTRSVVAAHDKDINSVAVARNDSLVCTGSE 519
Query: 407 DKTIKLWNTLAECKYTIQDDGHSDWVSCVRFS 502
D+T +W L + + + GH + V FS
Sbjct: 520 DRTASIWR-LPDLVHVVTLKGHKRRIFSVEFS 550
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW 427
+GS D+T +W L + H + + SV FS ++ +++ S DKT+K+W
Sbjct: 516 TGSEDRTASIWRLPDLVHVVTLKGHKRRIFSVEFSTVDQCVMTASGDKTVKIW 568
Score = 37.1 bits (82), Expect = 0.010
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 12/136 (8%)
Frame = +2
Query: 290 LRLWDLAAGKTTRRFEDHTKDVLSVAFSVD---NRQIVSGSRDKTIKLWNTLAECKYTIQ 460
+R++D+A + H + VLS+ V N IV+GS+DKT++LWN ++ +
Sbjct: 383 VRVYDVATMSCSYVLAGHKEVVLSLDTCVSSSGNVLIVTGSKDKTVRLWNATSKSCIGV- 441
Query: 461 DDGHSDWVSCVRFSPNMPTPLLYPVVGTEL---SRSGIS------LNCKLKINHLGHSGY 613
GH+ + V F+ + + L S GIS +N K + H
Sbjct: 442 GTGHNGDILAVAFAKKSFSFFVSGSGDRTLKVWSLDGISEDSEEPINLKTRSVVAAHDKD 501
Query: 614 LNTVTVSPDGSLCASG 661
+N+V V+ + SL +G
Sbjct: 502 INSVAVARNDSLVCTG 517
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 57 GTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKL 167
G GHNG + +A K +S S D+TL VW L
Sbjct: 440 GVGTGHNGDILAVAFAKKSFSFFVSGSGDRTLKVWSL 476
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 55.6 bits (128), Expect = 3e-08
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 5/141 (3%)
Frame = +2
Query: 254 RNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT 433
+N L+G DK + WD+ G+ T+ ++ H V ++ F +NR+ V+ S DK++++W
Sbjct: 382 QNILLAGMSDKKIVQWDINTGEVTQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEF 441
Query: 434 LAECKYTIQDDGHSDWVSCVRFSPN---MPTPLLYPVVGTELSRSGISLNCKLKINHLGH 604
+ H + + PN + L + +R LN K + GH
Sbjct: 442 GIPVVIKYISEPHMHSMPSISVHPNGNWLAAQSLDNQILIYSTRERFQLNKKKRF--AGH 499
Query: 605 --SGYLNTVTVSPDGSLCASG 661
+GY V SPDG SG
Sbjct: 500 IVAGYACQVNFSPDGRFVMSG 520
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLA-AGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT 433
LS D +++WD+ +GK R + H K V + FS D + ++ DK IK W+T
Sbjct: 299 LSAGMDCKVKIWDVYNSGKCMRTYMGHAKAVRDICFSNDGSKFLTAGYDKNIKYWDT 355
Score = 32.3 bits (70), Expect = 0.29
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = +3
Query: 48 KLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHF 227
+L T GH V+ I PK ++LS+ D + +W D N G + GH+
Sbjct: 273 RLVHTWSGHTKGVSAIRFFPKQGHLLLSAGMDCKVKIW----DVYNSGKCMRTYMGHAKA 328
Query: 228 ISDVVLSSD 254
+ D+ S+D
Sbjct: 329 VRDICFSND 337
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQ--IVSGSRDKTIKLWNTLA 439
L+ +DK ++ WD G+ F + D++Q +++G DK I W+ +
Sbjct: 342 LTAGYDKNIKYWDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWD-IN 400
Query: 440 ECKYTIQDDGHSDWVSCVRFSPN 508
+ T + D H V+ + F N
Sbjct: 401 TGEVTQEYDQHLGAVNTITFVDN 423
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 54.4 bits (125), Expect = 6e-08
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRF-----EDHTKDVLSVAFSVDNRQ-IVSGSRDKTIK 421
+ ++ S D+T LWD+ G T F HT DVLSV+ S N +SGS D T +
Sbjct: 171 HLITSSGDQTCILWDVTTGLKTSVFGGEFQSGHTADVLSVSISGSNPNWFISGSCDSTAR 230
Query: 422 LWNTLAECKYTIQDDGHSDWVSCVRFSPN 508
LW+T A + GH V+ V+F P+
Sbjct: 231 LWDTRAASRAVRTFHGHEGDVNTVKFFPD 259
Score = 49.6 bits (113), Expect = 2e-06
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDL-AAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT 433
N+ +SGS D T RLWD AA + R F H DV +V F D + +GS D T +L++
Sbjct: 218 NWFISGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDI 277
Query: 434 LAECK---YTIQDDGHSDWVSCVRFS 502
+ Y DG + V+ + FS
Sbjct: 278 RTGHQLQVYQPHGDGENGPVTSIAFS 303
Score = 35.5 bits (78), Expect = 0.032
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = +2
Query: 326 RRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSCVRFSP 505
R + HT V S+ ++ + +IVS S+D + +WN L K T WV FSP
Sbjct: 59 RTLQGHTGKVYSLDWTPERNRIVSASQDGRLIVWNALTSQK-THAIKLPCAWVMTCAFSP 117
Query: 506 N 508
N
Sbjct: 118 N 118
Score = 35.1 bits (77), Expect = 0.042
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Frame = +2
Query: 254 RNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW-- 427
RN +S S D L +W+ + T + V++ AFS + + + G D ++
Sbjct: 77 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPNGQSVACGGLDSVCSIFSL 136
Query: 428 NTLAECKYTIQDD----GHSDWVSCVRFSPNMPTPLL 526
++ A+ T+ GH +VSC ++ PN L+
Sbjct: 137 SSTADKDGTVPVSRMLTGHRGYVSCCQYVPNEDAHLI 173
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 42 TLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLT 170
T+ + L GH G+V+ P +++SS D+T I+W +T
Sbjct: 145 TVPVSRMLTGHRGYVSCCQYVPNEDAHLITSSGDQTCILWDVT 187
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 54.4 bits (125), Expect = 6e-08
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRF-----EDHTKDVLSVAFSVDNRQ-IVSGSRDKTIK 421
+ ++ S D+T LWD+ G T F HT DVLSV+ S N +SGS D T +
Sbjct: 109 HLITSSGDQTCILWDVTTGLKTSVFGGEFQSGHTADVLSVSISGSNPNWFISGSCDSTAR 168
Query: 422 LWNTLAECKYTIQDDGHSDWVSCVRFSPN 508
LW+T A + GH V+ V+F P+
Sbjct: 169 LWDTRAASRAVRTFHGHEGDVNTVKFFPD 197
Score = 49.6 bits (113), Expect = 2e-06
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDL-AAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT 433
N+ +SGS D T RLWD AA + R F H DV +V F D + +GS D T +L++
Sbjct: 156 NWFISGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDI 215
Query: 434 LAECK---YTIQDDGHSDWVSCVRFS 502
+ Y DG + V+ + FS
Sbjct: 216 RTGHQLQVYQPHGDGENGPVTSIAFS 241
Score = 35.1 bits (77), Expect = 0.042
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Frame = +2
Query: 254 RNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW-- 427
RN +S S D L +W+ + T + V++ AFS + + + G D ++
Sbjct: 15 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPNGQSVACGGLDSVCSIFSL 74
Query: 428 NTLAECKYTIQDD----GHSDWVSCVRFSPNMPTPLL 526
++ A+ T+ GH +VSC ++ PN L+
Sbjct: 75 SSTADKDGTVPVSRMLTGHRGYVSCCQYVPNEDAHLI 111
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 42 TLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLT 170
T+ + L GH G+V+ P +++SS D+T I+W +T
Sbjct: 83 TVPVSRMLTGHRGYVSCCQYVPNEDAHLITSSGDQTCILWDVT 125
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +2
Query: 353 VLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSCVRFSPN 508
V S+ ++ + +IVS S+D + +WN L K T WV FSPN
Sbjct: 6 VYSLDWTPERNRIVSASQDGRLIVWNALTSQK-THAIKLPCAWVMTCAFSPN 56
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 54.4 bits (125), Expect = 6e-08
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRF-----EDHTKDVLSVAFSVDNRQ-IVSGSRDKTIK 421
+ ++ S D+T LWD+ G T F HT DVLSV+ S N +SGS D T +
Sbjct: 171 HLITSSGDQTCILWDVTTGLKTSVFGGEFQSGHTADVLSVSISGSNPNWFISGSCDSTAR 230
Query: 422 LWNTLAECKYTIQDDGHSDWVSCVRFSPN 508
LW+T A + GH V+ V+F P+
Sbjct: 231 LWDTRAASRAVRTFHGHEGDVNTVKFFPD 259
Score = 49.6 bits (113), Expect = 2e-06
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDL-AAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT 433
N+ +SGS D T RLWD AA + R F H DV +V F D + +GS D T +L++
Sbjct: 218 NWFISGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDI 277
Query: 434 LAECK---YTIQDDGHSDWVSCVRFS 502
+ Y DG + V+ + FS
Sbjct: 278 RTGHQLQVYQPHGDGENGPVTSIAFS 303
Score = 35.5 bits (78), Expect = 0.032
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = +2
Query: 326 RRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSCVRFSP 505
R + HT V S+ ++ + +IVS S+D + +WN L K T WV FSP
Sbjct: 59 RTLQGHTGKVYSLDWTPERNRIVSASQDGRLIVWNALTSQK-THAIKLPCAWVMTCAFSP 117
Query: 506 N 508
N
Sbjct: 118 N 118
Score = 35.1 bits (77), Expect = 0.042
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Frame = +2
Query: 254 RNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW-- 427
RN +S S D L +W+ + T + V++ AFS + + + G D ++
Sbjct: 77 RNRIVSASQDGRLIVWNALTSQKTHAIKLPCAWVMTCAFSPNGQSVACGGLDSVCSIFSL 136
Query: 428 NTLAECKYTIQDD----GHSDWVSCVRFSPNMPTPLL 526
++ A+ T+ GH +VSC ++ PN L+
Sbjct: 137 SSTADKDGTVPVSRMLTGHRGYVSCCQYVPNEDAHLI 173
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 42 TLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLT 170
T+ + L GH G+V+ P +++SS D+T I+W +T
Sbjct: 145 TVPVSRMLTGHRGYVSCCQYVPNEDAHLITSSGDQTCILWDVT 187
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/54 (44%), Positives = 33/54 (61%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
S S+D T++LWD GK F H + V S+AFS + I SGS DK+I +W+
Sbjct: 516 SASFDSTVKLWDAELGKMLCSFNGHREPVYSLAFSPNGEYIASGSLDKSIHIWS 569
Score = 44.0 bits (99), Expect = 9e-05
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECK 448
+GS D R+W L G+ H + S+ ++ +++GS D+T +W+ AE +
Sbjct: 341 TGSCDGQARIWTLN-GELISTLSKHKGPIFSLKWNKKGDYLLTGSVDRTAVVWDVKAE-E 398
Query: 449 YTIQDDGHS------DWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHLGHSG 610
+ Q + HS DW + V F+ + ++Y L + G + K GH G
Sbjct: 399 WKQQFEFHSGPTLDVDWRNNVSFATSSTDSMIY------LCKIGETRPAK---TFTGHQG 449
Query: 611 YLNTVTVSPDGSLCAS 658
+N V P GSL AS
Sbjct: 450 EVNCVKWDPTGSLLAS 465
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/83 (31%), Positives = 43/83 (51%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTL 436
+Y L+GS D+T +WD+ A + ++FE H+ L V + +N + S D I L +
Sbjct: 378 DYLLTGSVDRTAVVWDVKAEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDSMIYLCK-I 435
Query: 437 AECKYTIQDDGHSDWVSCVRFSP 505
E + GH V+CV++ P
Sbjct: 436 GETRPAKTFTGHQGEVNCVKWDP 458
Score = 39.9 bits (89), Expect = 0.001
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSV-------DNRQ--IVSGSRDKTIK 421
S S D T ++W++ +HTK++ ++ +S N+Q + S S D T+K
Sbjct: 465 SCSDDSTAKIWNIKQSTFVHDLREHTKEIYTIRWSPTGPGTNNPNKQLTLASASFDSTVK 524
Query: 422 LWNTLAEC-KYTIQDDGHSDWVSCVRFSPN 508
LW+ AE K +GH + V + FSPN
Sbjct: 525 LWD--AELGKMLCSFNGHREPVYSLAFSPN 552
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 326 RRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
R E HT +V + A+S + SGS D T ++W+
Sbjct: 259 RILEGHTSEVCACAWSPSASLLASGSGDATARIWS 293
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 48 KLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDE 179
+L TL H G + + N K D +L+ S D+T +VW + +E
Sbjct: 356 ELISTLSKHKGPIFSLKWNKK-GDYLLTGSVDRTAVVWDVKAEE 398
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/53 (22%), Positives = 27/53 (50%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTI 418
Y SGS DK++ +W + GK + + + + V ++ + +I + D ++
Sbjct: 555 YIASGSLDKSIHIWSIKEGKIVKTYTGN-GGIFEVCWNKEGNKIAACFADNSV 606
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 53.2 bits (122), Expect = 1e-07
Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 4/138 (2%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAG-KTTRRFEDHTKDVLSVAFSV-DNRQIVSGSRDKTIKLWNT 433
Y LS S D ++LWD G T+ FE H+ V+ V F+ D S S D+TIK+WN
Sbjct: 113 YVLSSSDDMLIKLWDWEKGWACTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN- 171
Query: 434 LAECKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGI-SLNCKLKINHL-GHS 607
L D H V+CV + P Y + G++ + + K + L GH+
Sbjct: 172 LGSPDPNFTLDAHQKGVNCVDYFTGGDKP--YLITGSDDHTAKVWDYQTKSCVQTLEGHT 229
Query: 608 GYLNTVTVSPDGSLCASG 661
++ V P+ + +G
Sbjct: 230 HNVSAVCFHPELPIIITG 247
Score = 47.6 bits (108), Expect = 7e-06
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSV--DNRQIVSGSRDKTIKLWN 430
N S S D+T+++W+L + + H K V V + D +++GS D T K+W+
Sbjct: 156 NTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215
Query: 431 -TLAECKYTIQDDGHSDWVSCVRFSPNMP 514
C T+ +GH+ VS V F P +P
Sbjct: 216 YQTKSCVQTL--EGHTHNVSAVCFHPELP 242
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/57 (33%), Positives = 33/57 (57%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
Y ++GS D T ++WD + E HT +V +V F + I++GS D T+++W+
Sbjct: 201 YLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWH 257
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/85 (25%), Positives = 40/85 (47%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
+ L+ + TL +W+ + FE V S F + +V+G+ D I+++N
Sbjct: 29 WILASLYSGTLCIWNYQTQVMAKSFEVTELPVRSAKFVARKQWVVAGADDMYIRVYNYNT 88
Query: 440 ECKYTIQDDGHSDWVSCVRFSPNMP 514
K + + HSD++ CV P +P
Sbjct: 89 MDKVKVFE-AHSDYIRCVAVHPTLP 112
Score = 35.9 bits (79), Expect = 0.024
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 69 GHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNY 188
GH+ +V Q+ NPK + S+S D+T+ +W L + N+
Sbjct: 140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF 179
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 52.8 bits (121), Expect = 2e-07
Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 4/138 (2%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAG-KTTRRFEDHTKDVLSVAFSV-DNRQIVSGSRDKTIKLWNT 433
Y LS S D ++LWD G T+ FE H+ V+ V F+ D S S D+TIK+WN
Sbjct: 113 YVLSSSDDMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWN- 171
Query: 434 LAECKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGI-SLNCKLKINHL-GHS 607
L D H V+CV + P Y + G++ + + K + L GH+
Sbjct: 172 LGSPDPNFTLDAHQKGVNCVDYFTGGDKP--YLITGSDDHTAKVWDYQTKSCVQTLDGHT 229
Query: 608 GYLNTVTVSPDGSLCASG 661
++ V P+ + +G
Sbjct: 230 HNVSAVCFHPELPIIITG 247
Score = 49.2 bits (112), Expect = 2e-06
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSV--DNRQIVSGSRDKTIKLWN 430
N S S D+T+++W+L + + H K V V + D +++GS D T K+W+
Sbjct: 156 NTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215
Query: 431 -TLAECKYTIQDDGHSDWVSCVRFSPNMP 514
C T+ DGH+ VS V F P +P
Sbjct: 216 YQTKSCVQTL--DGHTHNVSAVCFHPELP 242
Score = 45.6 bits (103), Expect = 3e-05
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
Y ++GS D T ++WD + + HT +V +V F + I++GS D T+++W+
Sbjct: 201 YLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWH 257
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/85 (25%), Positives = 41/85 (48%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
+ L+ + T+ +W+ T+ FE V S F + +V+G+ D I+++N
Sbjct: 29 WILASLYSGTVCIWNYQTQTITKSFEVTELPVRSAKFIPRKQWVVAGADDMYIRVYNYNT 88
Query: 440 ECKYTIQDDGHSDWVSCVRFSPNMP 514
K + + HSD++ CV P +P
Sbjct: 89 MDKVKVFE-AHSDYIRCVAVHPTLP 112
Score = 35.9 bits (79), Expect = 0.024
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 69 GHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNY 188
GH+ +V Q+ NPK + S+S D+T+ +W L + N+
Sbjct: 140 GHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSPDPNF 179
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 52.8 bits (121), Expect = 2e-07
Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 4/138 (2%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAG-KTTRRFEDHTKDVLSVAFSV-DNRQIVSGSRDKTIKLWNT 433
Y LS S D ++LWD G T+ FE H+ V+ V F+ D S S D+TIK+WN
Sbjct: 113 YVLSSSDDMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWN- 171
Query: 434 LAECKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGI-SLNCKLKINHL-GHS 607
L D H V+CV + P Y + G++ + + K + L GH+
Sbjct: 172 LGSPDPNFTLDAHQKGVNCVDYFTGGDKP--YLITGSDDHTAKVWDYQTKSCVQTLDGHT 229
Query: 608 GYLNTVTVSPDGSLCASG 661
++ V P+ + +G
Sbjct: 230 HNVSAVCFHPELPIIITG 247
Score = 49.2 bits (112), Expect = 2e-06
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSV--DNRQIVSGSRDKTIKLWN 430
N S S D+T+++W+L + + H K V V + D +++GS D T K+W+
Sbjct: 156 NTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215
Query: 431 -TLAECKYTIQDDGHSDWVSCVRFSPNMP 514
C T+ DGH+ VS V F P +P
Sbjct: 216 YQTKSCVQTL--DGHTHNVSAVCFHPELP 242
Score = 45.6 bits (103), Expect = 3e-05
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
Y ++GS D T ++WD + + HT +V +V F + I++GS D T+++W+
Sbjct: 201 YLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWH 257
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/85 (25%), Positives = 41/85 (48%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
+ L+ + T+ +W+ T+ FE V S F + +V+G+ D I+++N
Sbjct: 29 WILASLYSGTVCIWNYQTQTITKSFEVTELPVRSAKFIPRKQWVVAGADDMYIRVYNYNT 88
Query: 440 ECKYTIQDDGHSDWVSCVRFSPNMP 514
K + + HSD++ CV P +P
Sbjct: 89 MDKVKVFE-AHSDYIRCVAVHPTLP 112
Score = 35.9 bits (79), Expect = 0.024
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 69 GHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNY 188
GH+ +V Q+ NPK + S+S D+T+ +W L + N+
Sbjct: 140 GHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSPDPNF 179
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 52.8 bits (121), Expect = 2e-07
Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 4/138 (2%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAG-KTTRRFEDHTKDVLSVAFSV-DNRQIVSGSRDKTIKLWNT 433
Y LS S D ++LWD G T+ FE H+ V+ V F+ D S S D+TIK+WN
Sbjct: 113 YVLSSSDDMLIKLWDWENGWACTQIFEGHSHYVMQVVFNPKDTNTFASASLDRTIKIWN- 171
Query: 434 LAECKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGI-SLNCKLKINHL-GHS 607
L D H V+CV + P Y + G++ + + K + L GH+
Sbjct: 172 LGSPDPNFTLDAHQKGVNCVDYFTGGDKP--YLITGSDDHTAKVWDYQTKSCVQTLDGHT 229
Query: 608 GYLNTVTVSPDGSLCASG 661
++ V P+ + +G
Sbjct: 230 HNVSAVCFHPELPIIITG 247
Score = 49.2 bits (112), Expect = 2e-06
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSV--DNRQIVSGSRDKTIKLWN 430
N S S D+T+++W+L + + H K V V + D +++GS D T K+W+
Sbjct: 156 NTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215
Query: 431 -TLAECKYTIQDDGHSDWVSCVRFSPNMP 514
C T+ DGH+ VS V F P +P
Sbjct: 216 YQTKSCVQTL--DGHTHNVSAVCFHPELP 242
Score = 45.6 bits (103), Expect = 3e-05
Identities = 18/57 (31%), Positives = 33/57 (57%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
Y ++GS D T ++WD + + HT +V +V F + I++GS D T+++W+
Sbjct: 201 YLITGSDDHTAKVWDYQTKSCVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWH 257
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/85 (25%), Positives = 41/85 (48%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
+ L+ + T+ +W+ T+ FE V S F + +V+G+ D I+++N
Sbjct: 29 WILASLYSGTVCIWNYQTQTITKSFEVTELPVRSAKFIPRKQWVVAGADDMYIRVYNYNT 88
Query: 440 ECKYTIQDDGHSDWVSCVRFSPNMP 514
K + + HSD++ CV P +P
Sbjct: 89 MDKVKVFE-AHSDYIRCVAVHPTLP 112
Score = 35.9 bits (79), Expect = 0.024
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 69 GHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNY 188
GH+ +V Q+ NPK + S+S D+T+ +W L + N+
Sbjct: 140 GHSHYVMQVVFNPKDTNTFASASLDRTIKIWNLGSPDPNF 179
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 52.8 bits (121), Expect = 2e-07
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 4/138 (2%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAG-KTTRRFEDHTKDVLSVAFSV-DNRQIVSGSRDKTIKLWNT 433
Y LS S D ++LWD G T+ FE H+ V+ V F+ D S S D+TIK+WN
Sbjct: 113 YVLSSSDDMLIKLWDWEKGWLCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWN- 171
Query: 434 LAECKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGI-SLNCKLKINHL-GHS 607
L D H V+CV + P Y + G++ + + K + L GH+
Sbjct: 172 LGSPDPNFTLDAHLKGVNCVDYFTGGDKP--YLITGSDDHTAKVWDYQTKSCVQTLEGHT 229
Query: 608 GYLNTVTVSPDGSLCASG 661
++ V+ P+ + +G
Sbjct: 230 HNVSAVSFHPELPIIITG 247
Score = 48.4 bits (110), Expect = 4e-06
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSV--DNRQIVSGSRDKTIKLWN 430
N S S D+T+++W+L + + H K V V + D +++GS D T K+W+
Sbjct: 156 NTFASASLDRTIKIWNLGSPDPNFTLDAHLKGVNCVDYFTGGDKPYLITGSDDHTAKVWD 215
Query: 431 -TLAECKYTIQDDGHSDWVSCVRFSPNMP 514
C T+ +GH+ VS V F P +P
Sbjct: 216 YQTKSCVQTL--EGHTHNVSAVSFHPELP 242
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
Y ++GS D T ++WD + E HT +V +V+F + I++GS D T+++W+
Sbjct: 201 YLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVSFHPELPIIITGSEDGTVRIWH 257
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/85 (23%), Positives = 40/85 (47%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
+ L+ + TL +W+ + F+ V S F + +V+G+ D I+++N
Sbjct: 29 WILASLYSGTLCIWNYQTQTMVKSFDVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNT 88
Query: 440 ECKYTIQDDGHSDWVSCVRFSPNMP 514
K + + H+D++ CV P +P
Sbjct: 89 MDKIKVFE-AHADYIRCVAVHPTLP 112
Score = 35.9 bits (79), Expect = 0.024
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 69 GHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNY 188
GH+ +V Q+ NPK + S+S D+T+ +W L + N+
Sbjct: 140 GHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNF 179
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 51.6 bits (118), Expect = 4e-07
Identities = 25/83 (30%), Positives = 42/83 (50%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
+ +SG D +++WDL AGK F+ H + S+ F + +GS DKT+K W+ L
Sbjct: 250 WIVSGGEDNVVKVWDLTAGKLLHEFKSHEGKIQSLDFHPHEFLLATGSADKTVKFWD-LE 308
Query: 440 ECKYTIQDDGHSDWVSCVRFSPN 508
+ + V C+ F+P+
Sbjct: 309 TFELIGSGGTETTGVRCLTFNPD 331
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/80 (31%), Positives = 40/80 (50%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECK 448
SGS D L++WD+ ++ HT+ V + F+ D R IVSG D +K+W+ L K
Sbjct: 211 SGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWIVSGGEDNVVKVWD-LTAGK 269
Query: 449 YTIQDDGHSDWVSCVRFSPN 508
+ H + + F P+
Sbjct: 270 LLHEFKSHEGKIQSLDFHPH 289
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAE-C 445
+G+ T++LWDL K R H + +SV F SGS D +K+W+ + C
Sbjct: 169 AGAASGTIKLWDLEEAKVVRTLTGHRSNCVSVNFHPFGEFFASGSLDTNLKIWDIRKKGC 228
Query: 446 KYTIQDDGHSDWVSCVRFSPN 508
+T + GH+ V+ +RF+P+
Sbjct: 229 IHTYK--GHTRGVNVLRFTPD 247
Score = 39.1 bits (87), Expect = 0.003
Identities = 33/132 (25%), Positives = 50/132 (37%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAEC 445
++G D + LW + H+ + SV F + +G+ TIKLW+ L E
Sbjct: 126 VTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEGLVAAGAASGTIKLWD-LEEA 184
Query: 446 KYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHLGHSGYLNTV 625
K GH V F P + T L I + + GH+ +N +
Sbjct: 185 KVVRTLTGHRSNCVSVNFHP-FGEFFASGSLDTNLKIWDIRKKGCIH-TYKGHTRGVNVL 242
Query: 626 TVSPDGSLCASG 661
+PDG SG
Sbjct: 243 RFTPDGRWIVSG 254
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/54 (25%), Positives = 30/54 (55%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
+GS DKT++ WDL + T V + F+ D + ++ G ++ ++K+++
Sbjct: 295 TGSADKTVKFWDLETFELIGSGGTETTGVRCLTFNPDGKSVLCGLQE-SLKIFS 347
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 51.2 bits (117), Expect = 6e-07
Identities = 26/88 (29%), Positives = 44/88 (50%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
+ +SG D +++WDL AGK F+ H + S+ F + +GS D+T+K W+ L
Sbjct: 157 WVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWD-LE 215
Query: 440 ECKYTIQDDGHSDWVSCVRFSPNMPTPL 523
+ + V C+ F+P+ T L
Sbjct: 216 TFELIGSGGPETAGVRCLSFNPDGKTVL 243
Score = 50.8 bits (116), Expect = 8e-07
Identities = 24/80 (30%), Positives = 40/80 (50%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECK 448
SGS D L++WD+ ++ HT+ V + F+ D R +VSG D +K+W+ L K
Sbjct: 118 SGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWD-LTAGK 176
Query: 449 YTIQDDGHSDWVSCVRFSPN 508
+ H + + F P+
Sbjct: 177 LLTEFKSHEGQIQSLDFHPH 196
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAE-C 445
+G+ T++LWDL K R H + +SV F SGS D +K+W+ + C
Sbjct: 76 AGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC 135
Query: 446 KYTIQDDGHSDWVSCVRFSPN 508
+T + GH+ V+ +RF+P+
Sbjct: 136 IHTYK--GHTRGVNVLRFTPD 154
Score = 37.9 bits (84), Expect = 0.006
Identities = 33/132 (25%), Positives = 50/132 (37%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAEC 445
++G D + LW + H+ + SV F + +G+ TIKLW+ L E
Sbjct: 33 VTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEVLVAAGAASGTIKLWD-LEEA 91
Query: 446 KYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHLGHSGYLNTV 625
K GH V F P + T L I + + GH+ +N +
Sbjct: 92 KIVRTLTGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKGCIH-TYKGHTRGVNVL 149
Query: 626 TVSPDGSLCASG 661
+PDG SG
Sbjct: 150 RFTPDGRWVVSG 161
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/54 (24%), Positives = 31/54 (57%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
+GS D+T++ WDL + T V ++F+ D + ++ G ++ ++K+++
Sbjct: 202 TGSADRTVKFWDLETFELIGSGGPETAGVRCLSFNPDGKTVLCGLQE-SLKIFS 254
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 51.2 bits (117), Expect = 6e-07
Identities = 26/88 (29%), Positives = 44/88 (50%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
+ +SG D +++WDL AGK F+ H + S+ F + +GS D+T+K W+ L
Sbjct: 157 WVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWD-LE 215
Query: 440 ECKYTIQDDGHSDWVSCVRFSPNMPTPL 523
+ + V C+ F+P+ T L
Sbjct: 216 TFELIGSGGPETAGVRCLSFNPDGKTVL 243
Score = 50.8 bits (116), Expect = 8e-07
Identities = 24/80 (30%), Positives = 40/80 (50%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECK 448
SGS D L++WD+ ++ HT+ V + F+ D R +VSG D +K+W+ L K
Sbjct: 118 SGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWD-LTAGK 176
Query: 449 YTIQDDGHSDWVSCVRFSPN 508
+ H + + F P+
Sbjct: 177 LLTEFKSHEGQIQSLDFHPH 196
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAE-C 445
+G+ T++LWDL K R H + +SV F SGS D +K+W+ + C
Sbjct: 76 AGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGC 135
Query: 446 KYTIQDDGHSDWVSCVRFSPN 508
+T + GH+ V+ +RF+P+
Sbjct: 136 IHTYK--GHTRGVNVLRFTPD 154
Score = 37.9 bits (84), Expect = 0.006
Identities = 33/132 (25%), Positives = 50/132 (37%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAEC 445
++G D + LW + H+ + SV F + +G+ TIKLW+ L E
Sbjct: 33 VTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEVLVAAGAASGTIKLWD-LEEA 91
Query: 446 KYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHLGHSGYLNTV 625
K GH V F P + T L I + + GH+ +N +
Sbjct: 92 KIVRTLTGHRSNCISVDFHP-FGEFFASGSLDTNLKIWDIRKKGCIH-TYKGHTRGVNVL 149
Query: 626 TVSPDGSLCASG 661
+PDG SG
Sbjct: 150 RFTPDGRWVVSG 161
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/54 (24%), Positives = 31/54 (57%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
+GS D+T++ WDL + T V ++F+ D + ++ G ++ ++K+++
Sbjct: 202 TGSADRTVKFWDLETFELIGSGGPETAGVRCLSFNPDGKTVLCGLQE-SLKIFS 254
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFED---HTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
+SG DK +R+WD GK ++ ++ H KD+ S+ + D+ ++GS DKT KLW+
Sbjct: 164 VSGGEDKVIRIWDAETGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWD 221
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
D T LW G+ + H V S D+ ++++GS D+T KLW+
Sbjct: 31 DHTPTLWFADNGERLGTYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWD 80
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 394
++GS D+T +LWD+ +GK F+ SV F+V +R V
Sbjct: 68 ITGSADQTAKLWDVKSGKELFTFK-FNAPTRSVDFAVGDRLAV 109
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFED---HTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
+SG DK +R+WD GK ++ ++ H KD+ S+ + D+ ++GS DKT KLW+
Sbjct: 164 VSGGEDKVIRIWDAETGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWD 221
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
D T LW G+ + H V S D+ ++++GS D+T KLW+
Sbjct: 31 DHTPTLWFADNGERLGTYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWD 80
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 394
++GS D+T +LWD+ +GK F+ SV F+V +R V
Sbjct: 68 ITGSADQTAKLWDVKSGKELFTFK-FNAPTRSVDFAVGDRLAV 109
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 51.2 bits (117), Expect = 6e-07
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFED---HTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
+SG DK +R+WD GK ++ ++ H KD+ S+ + D+ ++GS DKT KLW+
Sbjct: 164 VSGGEDKVIRIWDAETGKLLKQSDEEVGHKKDITSLCKAADDSHFLTGSLDKTAKLWD 221
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
D T LW G+ + H V S D+ ++++GS D+T KLW+
Sbjct: 31 DHTPTLWFADNGERLGTYRGHNGAVWCCDVSRDSSRLITGSADQTAKLWD 80
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 394
++GS D+T +LWD+ +GK F+ SV F+V +R V
Sbjct: 68 ITGSADQTAKLWDVKSGKELFTFK-FNAPTRSVDFAVGDRLAV 109
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 51.2 bits (117), Expect = 6e-07
Identities = 21/60 (35%), Positives = 34/60 (56%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
+ SGS D LR+WD + ++ HT+ + ++ FS D R +VSG D +K+W+ A
Sbjct: 63 FLASGSSDTNLRVWDTRKKGCIQTYKGHTRGISTIEFSPDGRWVVSGGLDNVVKVWDLTA 122
Score = 50.8 bits (116), Expect = 8e-07
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAE- 442
L+G+ ++LWDL K R F H + +V F + SGS D +++W+T +
Sbjct: 23 LAGASSGVIKLWDLEESKMVRAFTGHRSNCSAVEFHPFGEFLASGSSDTNLRVWDTRKKG 82
Query: 443 CKYTIQDDGHSDWVSCVRFSPN 508
C T + GH+ +S + FSP+
Sbjct: 83 CIQTYK--GHTRGISTIEFSPD 102
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
+ +SG D +++WDL AGK F+ H + S+ F + +GS D+T+K W+
Sbjct: 105 WVVSGGLDNVVKVWDLTAGKLLHEFKCHEGPIRSLDFHPLEFLLATGSADRTVKFWD 161
Score = 39.1 bits (87), Expect = 0.003
Identities = 34/107 (31%), Positives = 47/107 (43%)
Frame = +2
Query: 341 HTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSCVRFSPNMPTP 520
HT V SVAF+ + +++G+ IKLW+ L E K GH S V F P
Sbjct: 6 HTSPVDSVAFNSEEVLVLAGASSGVIKLWD-LEESKMVRAFTGHRSNCSAVEFHP-FGEF 63
Query: 521 LLYPVVGTELSRSGISLNCKLKINHLGHSGYLNTVTVSPDGSLCASG 661
L T L R + + GH+ ++T+ SPDG SG
Sbjct: 64 LASGSSDTNL-RVWDTRKKGCIQTYKGHTRGISTIEFSPDGRWVVSG 109
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRD 409
+GS D+T++ WDL + V ++AF D + + G D
Sbjct: 150 TGSADRTVKFWDLETFELIGTTRPEATGVRAIAFHPDGQTLFCGLDD 196
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 50.8 bits (116), Expect = 8e-07
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAE- 442
L+G+ ++LWD+ K R F H + +V F + SGS D +K+W+ +
Sbjct: 74 LAGASSGVIKLWDVEEAKMVRAFTGHRSNCSAVEFHPFGEFLASGSSDANLKIWDIRKKG 133
Query: 443 CKYTIQDDGHSDWVSCVRFSPN 508
C T + GHS +S +RF+P+
Sbjct: 134 CIQTYK--GHSRGISTIRFTPD 153
Score = 48.8 bits (111), Expect = 3e-06
Identities = 18/60 (30%), Positives = 35/60 (58%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
+ SGS D L++WD+ + ++ H++ + ++ F+ D R +VSG D +K+W+ A
Sbjct: 114 FLASGSSDANLKIWDIRKKGCIQTYKGHSRGISTIRFTPDGRWVVSGGLDNVVKVWDLTA 173
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
+ +SG D +++WDL AGK F+ H + S+ F + +GS D+T+K W+
Sbjct: 156 WVVSGGLDNVVKVWDLTAGKLLHEFKFHEGPIRSLDFHPLEFLLATGSADRTVKFWD 212
Score = 41.5 bits (93), Expect = 5e-04
Identities = 36/132 (27%), Positives = 54/132 (40%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAEC 445
++G D + LW + + HT V SVAF +++G+ IKLW+ + E
Sbjct: 32 ITGGDDYKVNLWAIGKPTSLMSLCGHTSAVDSVAFDSAEVLVLAGASSGVIKLWD-VEEA 90
Query: 446 KYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHLGHSGYLNTV 625
K GH S V F P L L I ++ + GHS ++T+
Sbjct: 91 KMVRAFTGHRSNCSAVEFHP-FGEFLASGSSDANLKIWDIRKKGCIQ-TYKGHSRGISTI 148
Query: 626 TVSPDGSLCASG 661
+PDG SG
Sbjct: 149 RFTPDGRWVVSG 160
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
+GS D+T++ WDL + V S+ F D R + G D ++K+++
Sbjct: 201 TGSADRTVKFWDLETFELIGSTRPEATGVRSIKFHPDGRTLFCG-LDDSLKVYS 253
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 50.0 bits (114), Expect = 1e-06
Identities = 22/58 (37%), Positives = 40/58 (68%)
Frame = +2
Query: 332 FEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSCVRFSP 505
F+ H DVL +A+S ++ ++S S DKT++LWN ++ ++ HSD+V+C++F+P
Sbjct: 509 FQGHVDDVLDLAWS-KSQHLLSSSMDKTVRLWNLSSQT--CLKVFSHSDYVTCIQFNP 563
Score = 45.6 bits (103), Expect = 3e-05
Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS-VDNRQIVSGSRDKTIKLWN 430
+ LS S DKT+RLW+L++ +T + H+ V + F+ VD+R +SGS D +++W+
Sbjct: 526 HLLSSSMDKTVRLWNLSS-QTCLKVFSHSDYVTCIQFNPVDDRYFISGSLDAKVRVWS 582
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/57 (22%), Positives = 31/57 (54%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
Y +SGS D +R+W + + ++ H + V S ++ D + ++ GS + ++++
Sbjct: 568 YFISGSLDAKVRVWSIPDRQVVDWYDLH-EMVTSACYTPDGQGVLVGSYKGSCRMYS 623
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 50.0 bits (114), Expect = 1e-06
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +2
Query: 263 ALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN-TLA 439
A S D R+WDL G++ F+ H K V SV FS + + SG D ++W+ +
Sbjct: 396 AASCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLRMR 455
Query: 440 ECKYTIQDDGHSDWVSCVRFSP 505
+ Y I H++ VS V++ P
Sbjct: 456 KSLYII--PAHANLVSQVKYEP 475
Score = 48.8 bits (111), Expect = 3e-06
Identities = 28/83 (33%), Positives = 39/83 (46%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
Y + S+DKT RLWD+ G E H++ V +AF D S D ++W+ L
Sbjct: 353 YLGTTSYDKTWRLWDINTGAELLLQEGHSRSVYGIAFQQDGALAASCGLDSLARVWD-LR 411
Query: 440 ECKYTIQDDGHSDWVSCVRFSPN 508
+ + GH V V FSPN
Sbjct: 412 TGRSILVFQGHIKPVFSVNFSPN 434
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/77 (31%), Positives = 38/77 (49%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECK 448
+ S D+T +LW G + FE H + VAF + + + S DKT +LW+ +
Sbjct: 315 TASADRTAKLWK-TDGTLLQTFEGHLDRLARVAFHPSGKYLGTTSYDKTWRLWDINTGAE 373
Query: 449 YTIQDDGHSDWVSCVRF 499
+Q +GHS V + F
Sbjct: 374 LLLQ-EGHSRSVYGIAF 389
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +2
Query: 293 RLWDLA-AGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDG 469
+LW++ T +DH + V FS + + + S D+T KLW T T +G
Sbjct: 280 KLWEMPQVTNTIAVLKDHKERATDVVFSPVDDCLATASADRTAKLWKTDGTLLQTF--EG 337
Query: 470 HSDWVSCVRFSPN 508
H D ++ V F P+
Sbjct: 338 HLDRLARVAFHPS 350
Score = 33.9 bits (74), Expect = 0.096
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT 433
+ + S+D + +W + H V S+ + D+ I + S D+TIKLW +
Sbjct: 480 FLATASYDMKVNIWSGRDFSLVKSLAGHESKVASLDITADSSCIATVSHDRTIKLWTS 537
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 50.0 bits (114), Expect = 1e-06
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +2
Query: 254 RNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN- 430
+ + S +D R+WDL + F+ H K VLSV FS + + SG D ++W+
Sbjct: 142 QTFKASSGFDSLARVWDLRTARNILIFQGHIKQVLSVDFSPNGYHLASGGEDNQCRIWDL 201
Query: 431 TLAECKYTIQDDGHSDWVSCVRFSP 505
+ + Y I H + VS V++ P
Sbjct: 202 RMRKLLYII--PAHVNLVSQVKYEP 224
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 341 HTKDVLSVAFS-VDNRQIVSGSRDKTIKLWNT 433
H + V V FS VD+ + + S D+T K+W T
Sbjct: 105 HKEHVTDVVFSSVDDECLATASTDRTEKIWKT 136
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/78 (33%), Positives = 46/78 (58%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECK 448
SGS D +++W + G RRF+ H++ V S++FS D Q++S S D+T ++ + L K
Sbjct: 280 SGSQDGKIKIWRIRTGVCIRRFDAHSQGVTSLSFSRDGSQLLSTSFDQTARI-HGLKSGK 338
Query: 449 YTIQDDGHSDWVSCVRFS 502
+ GH+ +V+ F+
Sbjct: 339 LLKEFRGHTSYVNHAIFT 356
Score = 48.0 bits (109), Expect = 6e-06
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT-LAE 442
LS S+D+T R+ L +GK + F HT V F+ D +I++ S D T+K+W++ +
Sbjct: 321 LSTSFDQTARIHGLKSGKLLKEFRGHTSYVNHAIFTSDGSRIITASSDCTVKVWDSKTTD 380
Query: 443 CKYTIQ 460
C T +
Sbjct: 381 CLQTFK 386
Score = 46.0 bits (104), Expect = 2e-05
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 8/137 (5%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTR--------RFEDHTKDVLSVAFSVDNRQIVSGSRDKT 415
+ S S D + +WD +GK + F H VL + FS D+ + SGS+D
Sbjct: 227 FLASSSVDGFIEVWDYISGKLKKDLQYQADESFMMHDDPVLCIDFSRDSEMLASGSQDGK 286
Query: 416 IKLWNTLAECKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINH 595
IK+W + + D HS V+ + FS + + LL G+ + KL
Sbjct: 287 IKIWR-IRTGVCIRRFDAHSQGVTSLSFSRD-GSQLLSTSFDQTARIHGLK-SGKLLKEF 343
Query: 596 LGHSGYLNTVTVSPDGS 646
GH+ Y+N + DGS
Sbjct: 344 RGHTSYVNHAIFTSDGS 360
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW 427
DK L ++ +G H KDV+ + + + S D T+KLW
Sbjct: 461 DKKLYCFNYQSGGLEHFMMVHEKDVIGITHHPHRNLLATYSEDCTMKLW 509
>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
family protein contains 4 (3 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 414
Score = 49.2 bits (112), Expect = 2e-06
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +2
Query: 254 RNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI-VSGSRDKTIKL 424
RN SGS DK +++WD+A GK E H K V +VA++ ++ +SGSRD+T+ L
Sbjct: 227 RNIVASGSEDKKVKVWDVATGKCKVTMEHHEKKVHAVAWNNYTPEVLLSGSRDRTVVL 284
Score = 36.3 bits (80), Expect = 0.018
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 19/150 (12%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTR------RFEDHTKDVLSVAFSVDNRQIV-SGSRDKT 415
N+ G+ + ++ +WDL R T + + F+ +NR IV SGS DK
Sbjct: 181 NFVAIGTMESSIEIWDLDLVNEVLPCVQLGRIAGQT--LFFLTFNWENRNIVASGSEDKK 238
Query: 416 IKLWN-TLAECKYTIQDDGHSDWVSCVRFSPNMPTPLL-----YPVV---GTELSRSGIS 568
+K+W+ +CK T++ H V V ++ P LL VV G + S SG+
Sbjct: 239 VKVWDVATGKCKVTMEH--HEKKVHAVAWNNYTPEVLLSGSRDRTVVLKDGRDPSNSGLK 296
Query: 569 LNCKLKINHLG---HSGYLNTVTVSPDGSL 649
+ + K+ L HS + V++ DG++
Sbjct: 297 WSTEAKVEKLAWDPHSEHSFVVSLK-DGTV 325
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/55 (41%), Positives = 37/55 (67%)
Frame = +2
Query: 341 HTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSCVRFSP 505
HT DVL +A+S D+ ++S S+DKT++LW T C + H+++V+CV F+P
Sbjct: 271 HTGDVLDLAWS-DSNLLLSASKDKTVRLWRT--GCDQCLHVFHHNNYVTCVEFNP 322
Score = 39.5 bits (88), Expect = 0.002
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS-VDNRQIVSGSRDKTIKLWNT 433
N LS S DKT+RLW + F H V V F+ V+ SGS D ++W
Sbjct: 284 NLLLSASKDKTVRLWRTGCDQCLHVFH-HNNYVTCVEFNPVNKNNFASGSIDGKARIWG- 341
Query: 434 LAECKYTIQDDGHSDWVSCVRFSPN 508
L+E + D D +S + + PN
Sbjct: 342 LSEERVVAWTDVR-DSISAISYQPN 365
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +3
Query: 63 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDE 179
L GH G V +A + +++LS+S+DKT+ +W+ D+
Sbjct: 268 LYGHTGDVLDLAWSDS--NLLLSASKDKTVRLWRTGCDQ 304
>At3g49180.1 68416.m05375 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
GTP-binding protein beta chain homolog, Nicotiana
tabacum, PIR:T16970
Length = 438
Score = 48.4 bits (110), Expect = 4e-06
Identities = 19/59 (32%), Positives = 36/59 (61%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTL 436
Y + G + LW++A GK +++ H + V + FS D+ +VSGS+D +I++W+ +
Sbjct: 92 YLVGGGISGDIYLWEVATGKLLKKWHGHYRSVTCLVFSGDDSLLVSGSQDGSIRVWSLI 150
Score = 31.5 bits (68), Expect = 0.51
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 13/68 (19%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAA---------GKTT--RRFEDHTKDVLSVAFSVD--NRQIVSGSR 406
+SGS D ++R+W L G T F +HT V + N I+S S
Sbjct: 136 VSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTDIVIDYGGCNAVIISSSE 195
Query: 407 DKTIKLWN 430
D+T K+W+
Sbjct: 196 DRTCKVWS 203
>At5g54200.1 68418.m06748 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 825
Score = 48.0 bits (109), Expect = 6e-06
Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS-VDNRQIVSGSRDKTIKLWNTL 436
+ LS S DKT+RLWDL++ KT + H+ V + F+ VD+ +SGS D +++W ++
Sbjct: 481 HLLSSSMDKTVRLWDLSS-KTCLKVFSHSDYVTCIQFNPVDDNYFISGSLDAKVRIW-SI 538
Query: 437 AECKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGT 544
+ + +D H + V+ ++P+ L+ GT
Sbjct: 539 PDHQVVDWNDLH-EMVTAACYTPDGQGALVGSYKGT 573
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/58 (36%), Positives = 38/58 (65%)
Frame = +2
Query: 332 FEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSCVRFSP 505
F H DVL +++S ++ ++S S DKT++LW+ K ++ HSD+V+C++F+P
Sbjct: 464 FVGHLDDVLDLSWS-KSQHLLSSSMDKTVRLWD--LSSKTCLKVFSHSDYVTCIQFNP 518
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT 433
NY +SGS D +R+W + + + D + V + ++ D + + GS T L+NT
Sbjct: 522 NYFISGSLDAKVRIWSIPDHQVV-DWNDLHEMVTAACYTPDGQGALVGSYKGTCCLYNT 579
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 48.0 bits (109), Expect = 6e-06
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 254 RNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN- 430
R + L+ ++LWD G RF++H V V F VSG D IK+WN
Sbjct: 21 RPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNY 80
Query: 431 TLAECKYTIQDDGHSDWVSCVRFSPNMP 514
C +T+ GH D++ V+F P
Sbjct: 81 KTHRCLFTLL--GHLDYIRTVQFHHENP 106
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/80 (28%), Positives = 40/80 (50%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAEC 445
+SG D +++W+ + H + +V F +N IVS S D+TI++WN +
Sbjct: 67 VSGGDDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQSRT 126
Query: 446 KYTIQDDGHSDWVSCVRFSP 505
++ GH+ +V C F P
Sbjct: 127 CISVL-TGHNHYVMCASFHP 145
Score = 36.7 bits (81), Expect = 0.014
Identities = 26/88 (29%), Positives = 40/88 (45%)
Frame = +3
Query: 63 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDVV 242
L GHN +V + +PK D+++S+S D+T+ VW + + P L S SD+
Sbjct: 131 LTGHNHYVMCASFHPK-EDLVVSASLDQTVRVWDIGALKKKSASPADDLMRFSQMNSDLF 189
Query: 243 LSSDVITHFPVLGTRLCVCGISLQARLP 326
D I + + G V S LP
Sbjct: 190 GGVDAIVKYVLEGHDRGVNWASFHPTLP 217
Score = 35.9 bits (79), Expect = 0.024
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTR--RFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
+SG+ D+ ++LW + K H +V SV F IVS S DK+I++W+
Sbjct: 220 VSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWD 276
Score = 35.1 bits (77), Expect = 0.042
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
+ +S S D+T+R+W+ + H V+ +F +VS S D+T+++W+
Sbjct: 107 WIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWD 163
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +3
Query: 30 KMSETLKLR-GTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTR 173
+M+ET TLRGH V+ + + K D+I+S+S DK++ VW T+
Sbjct: 232 RMNETKAWEVDTLRGHMNNVSSVMFHAKQ-DIIVSNSEDKSIRVWDATK 279
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2
Query: 335 EDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDD--GHSDWVSCVRF 499
E H + V +F IVSG+ D+ +KLW + E K D GH + VS V F
Sbjct: 201 EGHDRGVNWASFHPTLPLIVSGADDRQVKLWR-MNETKAWEVDTLRGHMNNVSSVMF 256
>At2g33340.2 68415.m04087 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 537
Score = 47.6 bits (108), Expect = 7e-06
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 4/135 (2%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAE-- 442
+G D T L+D +G+ H+K V SV F D+ +++ S DKT+++W +
Sbjct: 239 TGGVDATAVLFDRPSGQILSTLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRNPGDGN 298
Query: 443 --CKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHLGHSGYL 616
C YT+ D HS V V P + + GT S +C +++ +
Sbjct: 299 YACGYTLND--HSAEVRAVTVHPTNKYFVSASLDGTWCFYDLSSGSCLAQVSDDSKNVDY 356
Query: 617 NTVTVSPDGSLCASG 661
PDG + +G
Sbjct: 357 TAAAFHPDGLILGTG 371
Score = 36.7 bits (81), Expect = 0.014
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Frame = +2
Query: 266 LSGSWDKTLRLW------DLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW 427
L+ S DKT+R+W + A G T DH+ +V +V N+ VS S D T +
Sbjct: 280 LTASADKTVRIWRNPGDGNYACGYT---LNDHSAEVRAVTVHPTNKYFVSASLDGTWCFY 336
Query: 428 N-TLAECKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISL-NCKLKINHL- 598
+ + C + DD + + F P+ ++GT S+S + + + K + N
Sbjct: 337 DLSSGSCLAQVSDDSKNVDYTAAAFHPD------GLILGTGTSQSVVKIWDVKSQANVAK 390
Query: 599 --GHSGYLNTVTVSPDGSLCAS 658
GH+G + ++ S +G A+
Sbjct: 391 FDGHTGEVTAISFSENGYFLAT 412
Score = 35.5 bits (78), Expect = 0.032
Identities = 12/54 (22%), Positives = 33/54 (61%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
+G+ +++WD+ + +F+ HT +V +++FS +N ++ + + ++LW+
Sbjct: 370 TGTSQSVVKIWDVKSQANVAKFDGHTGEVTAISFS-ENGYFLATAAEDGVRLWD 422
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 48 KLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDEN 182
++ TL GH+ VT + D++L++S DKT+ +W+ D N
Sbjct: 255 QILSTLTGHSKKVTSVKFVGD-SDLVLTASADKTVRIWRNPGDGN 298
>At2g33340.1 68415.m04086 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 565
Score = 47.6 bits (108), Expect = 7e-06
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 4/135 (2%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAE-- 442
+G D T L+D +G+ H+K V SV F D+ +++ S DKT+++W +
Sbjct: 239 TGGVDATAVLFDRPSGQILSTLTGHSKKVTSVKFVGDSDLVLTASADKTVRIWRNPGDGN 298
Query: 443 --CKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHLGHSGYL 616
C YT+ D HS V V P + + GT S +C +++ +
Sbjct: 299 YACGYTLND--HSAEVRAVTVHPTNKYFVSASLDGTWCFYDLSSGSCLAQVSDDSKNVDY 356
Query: 617 NTVTVSPDGSLCASG 661
PDG + +G
Sbjct: 357 TAAAFHPDGLILGTG 371
Score = 36.7 bits (81), Expect = 0.014
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 11/142 (7%)
Frame = +2
Query: 266 LSGSWDKTLRLW------DLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW 427
L+ S DKT+R+W + A G T DH+ +V +V N+ VS S D T +
Sbjct: 280 LTASADKTVRIWRNPGDGNYACGYT---LNDHSAEVRAVTVHPTNKYFVSASLDGTWCFY 336
Query: 428 N-TLAECKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISL-NCKLKINHL- 598
+ + C + DD + + F P+ ++GT S+S + + + K + N
Sbjct: 337 DLSSGSCLAQVSDDSKNVDYTAAAFHPD------GLILGTGTSQSVVKIWDVKSQANVAK 390
Query: 599 --GHSGYLNTVTVSPDGSLCAS 658
GH+G + ++ S +G A+
Sbjct: 391 FDGHTGEVTAISFSENGYFLAT 412
Score = 35.5 bits (78), Expect = 0.032
Identities = 12/54 (22%), Positives = 33/54 (61%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
+G+ +++WD+ + +F+ HT +V +++FS +N ++ + + ++LW+
Sbjct: 370 TGTSQSVVKIWDVKSQANVAKFDGHTGEVTAISFS-ENGYFLATAAEDGVRLWD 422
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 48 KLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDEN 182
++ TL GH+ VT + D++L++S DKT+ +W+ D N
Sbjct: 255 QILSTLTGHSKKVTSVKFVGD-SDLVLTASADKTVRIWRNPGDGN 298
>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 47.6 bits (108), Expect = 7e-06
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Frame = +2
Query: 254 RNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS-VDNRQIVSGSRDKTIKLWN 430
+ Y LS S D+T+RLW + + R F H V VAF+ VD+ +SGS D +++W+
Sbjct: 333 KGYLLSSSVDETVRLWRVGCDECLRTF-THNNFVTCVAFNPVDDNYFISGSIDGKVRIWD 391
Query: 431 TLAECKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVG 541
+ C+ D D V+ V + P+ ++ + G
Sbjct: 392 -VTRCRVVDYTD-IRDIVTAVCYRPDAKGAVIGSMTG 426
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 72 HNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTR 173
HN +VT +A NP + +S S D + +W +TR
Sbjct: 361 HNNFVTCVAFNPVDDNYFISGSIDGKVRIWDVTR 394
>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 47.6 bits (108), Expect = 7e-06
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Frame = +2
Query: 254 RNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS-VDNRQIVSGSRDKTIKLWN 430
+ Y LS S D+T+RLW + + R F H V VAF+ VD+ +SGS D +++W+
Sbjct: 333 KGYLLSSSVDETVRLWRVGCDECLRTF-THNNFVTCVAFNPVDDNYFISGSIDGKVRIWD 391
Query: 431 TLAECKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVG 541
+ C+ D D V+ V + P+ ++ + G
Sbjct: 392 -VTRCRVVDYTD-IRDIVTAVCYRPDAKGAVIGSMTG 426
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 72 HNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTR 173
HN +VT +A NP + +S S D + +W +TR
Sbjct: 361 HNNFVTCVAFNPVDDNYFISGSIDGKVRIWDVTR 394
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 47.6 bits (108), Expect = 7e-06
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Frame = +2
Query: 254 RNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN- 430
R + L+ ++LWD G RF++H V V F VSG D IK+WN
Sbjct: 21 RPWILASLHSGVIQLWDYRMGTLIDRFDEHEGPVRGVHFHNSQPLFVSGGDDYKIKVWNY 80
Query: 431 TLAECKYTIQDDGHSDWVSCVRFSPNMP 514
C +T+ GH D++ V+F P
Sbjct: 81 KNHRCLFTLL--GHLDYIRTVQFHHEYP 106
Score = 40.7 bits (91), Expect = 8e-04
Identities = 22/80 (27%), Positives = 39/80 (48%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAEC 445
+SG D +++W+ + H + +V F + IVS S D+TI++WN +
Sbjct: 67 VSGGDDYKIKVWNYKNHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWNWQSRT 126
Query: 446 KYTIQDDGHSDWVSCVRFSP 505
++ GH+ +V C F P
Sbjct: 127 CVSVL-TGHNHYVMCASFHP 145
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
+ +S S D+T+R+W+ + H V+ +F +VS S D+T+++W+ A
Sbjct: 107 WIVSASDDQTIRIWNWQSRTCVSVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGA 166
Query: 440 ECKYTI 457
K T+
Sbjct: 167 LRKKTV 172
Score = 36.3 bits (80), Expect = 0.018
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTR--RFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN-TL 436
+SG+ D+ ++LW + K H +V SV F IVS S DK+I++W+ T
Sbjct: 220 VSGADDRQVKLWRMNETKAWEVDTLRGHMNNVSSVMFHAKQDIIVSNSEDKSIRVWDATK 279
Query: 437 AECKYTIQDDGHSDWVSCVRFSPNM 511
T + + W+ V N+
Sbjct: 280 RTGLQTFRREHDRFWILAVHPEMNL 304
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +3
Query: 30 KMSETLKLR-GTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTR 173
+M+ET TLRGH V+ + + K D+I+S+S DK++ VW T+
Sbjct: 232 RMNETKAWEVDTLRGHMNNVSSVMFHAKQ-DIIVSNSEDKSIRVWDATK 279
Score = 31.5 bits (68), Expect = 0.51
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +3
Query: 63 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDVV 242
L GHN +V + +PK D+++S+S D+T+ VW + P + + SD+
Sbjct: 131 LTGHNHYVMCASFHPK-EDLVVSASLDQTVRVWDIGALRKKTVSPADDIMRLTQMNSDLF 189
Query: 243 LSSDVITHFPVLG 281
D I + + G
Sbjct: 190 GGVDAIVKYVLEG 202
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2
Query: 335 EDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDD--GHSDWVSCVRF 499
E H + V AF IVSG+ D+ +KLW + E K D GH + VS V F
Sbjct: 201 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR-MNETKAWEVDTLRGHMNNVSSVMF 256
>At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1)
identical to phytochrome A supressor spa1 (GI:4809171)
[Arabidopsis thaliana]; contains 8 WD-40 repeats (Pfam
PF00400) (1 weak)
Length = 1029
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +2
Query: 254 RNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS-VDNRQIVSGSRDKTIKLWN 430
+NY S +D +++WD G+ ++ +H K SV FS D + VSGS D ++KLW+
Sbjct: 778 KNYLASTDYDGVVQIWDAGTGQGFSQYTEHQKRAWSVDFSPSDPTKFVSGSDDCSVKLWS 837
Score = 33.1 bits (72), Expect = 0.17
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +2
Query: 257 NYALS-GSWDKTLRLWDLAAGKTTR-RFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
N+ L+ GS D + +DL KT H K V V F +D+ IVS S D ++KLWN
Sbjct: 863 NHLLAFGSADYKVYCYDLRYVKTPWCTLAGHEKAVSYVKF-MDSETIVSASTDNSLKLWN 921
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +2
Query: 254 RNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS-VDNRQIVSGSRDKTIKLWN 430
+N+ S ++ + +WD+ ++ +E+H K SV FS + +VSGS D +K+W
Sbjct: 433 KNHIASSDYEGIVTVWDVTTRQSLMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVKVWC 492
Query: 431 TLAECKYTIQDDGHSDWVSCVRFSP 505
T E I D ++ + CV+++P
Sbjct: 493 TRQEAS-VINIDMKAN-ICCVKYNP 515
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
N S S D TLRLWD+ R F HT + V +V++ + GS + +++
Sbjct: 561 NELASASTDSTLRLWDVKDNLPVRTFRGHTNEKNFVGLTVNSEYLACGSETNEVYVYH 618
>At3g18950.1 68416.m02405 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 473
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/62 (37%), Positives = 35/62 (56%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECK 448
SGSWDKTL++W L+ K + H + +VA D+ + +GS D T+K+W + K
Sbjct: 266 SGSWDKTLKVWRLSDSKCLESIQAHDDAINTVAAGFDD-LLFTGSADGTLKVWKRELQGK 324
Query: 449 YT 454
T
Sbjct: 325 GT 326
>At1g49450.1 68414.m05543 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 471
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/53 (41%), Positives = 31/53 (58%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW 427
SGSWDKTL++W L+ K E H V +V D+ + +GS D T+K+W
Sbjct: 262 SGSWDKTLKVWRLSDSKCLESIEAHDDAVNTVVSGFDD-LVFTGSADGTLKVW 313
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 341 HTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSCV 493
H V ++ + D + SGS DKT+K+W L++ K + H D V+ V
Sbjct: 244 HFDAVSCLSLNEDLGLLYSGSWDKTLKVWR-LSDSKCLESIEAHDDAVNTV 293
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 46.4 bits (105), Expect = 2e-05
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS-VDNRQIVSGSRDKTIKLWNT 433
NY LS S DKT+RLW + + F H V SV F+ V+ +SGS D +++WN
Sbjct: 340 NYLLSASMDKTVRLWKVGSNDCLGVFA-HNSYVTSVQFNPVNENYFMSGSIDGKVRIWN- 397
Query: 434 LAECKYTIQDDGHSDWVSCVRFSPN 508
++ C D D +S V + P+
Sbjct: 398 ISGCSVVDWAD-LKDIISAVCYRPD 421
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 66 RGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKL 167
RGH G V I+ + + +LS+S DKT+ +WK+
Sbjct: 325 RGHTGEVLDISWSKD--NYLLSASMDKTVRLWKV 356
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 72 HNGWVTQIATNPKYPDMILSSSRDKTLIVWKLT 170
HN +VT + NP + +S S D + +W ++
Sbjct: 367 HNSYVTSVQFNPVNENYFMSGSIDGKVRIWNIS 399
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/81 (29%), Positives = 39/81 (48%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECK 448
+GS D+T+++WD+A G H + V +A S + + S DK +K W+ L + K
Sbjct: 193 TGSADRTIKIWDVATGVLKLTLTGHIEQVRGLAVSNRHTYMFSAGDDKQVKCWD-LEQNK 251
Query: 449 YTIQDDGHSDWVSCVRFSPNM 511
GH V C+ P +
Sbjct: 252 VIRSYHGHLSGVYCLALHPTL 272
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
L+G D R+WD+ H V SV + Q+V+GS D TIK W+
Sbjct: 276 LTGGRDSVCRVWDIRTKMQIFALSGHDNTVCSVFTRPTDPQVVTGSHDTTIKFWD 330
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIK 421
++GS D T++ WDL GKT H K V ++ S S D T K
Sbjct: 318 VTGSHDTTIKFWDLRYGKTMSTLTHHKKSVRAMTLHPKENAFASASADNTKK 369
Score = 34.3 bits (75), Expect = 0.073
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +2
Query: 308 AAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
A K R + H V SVAF N +GS D+TIK+W+
Sbjct: 164 APWKNYRVIQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWD 204
Score = 31.1 bits (67), Expect = 0.68
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +3
Query: 63 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDVV 242
++GH GWV +A +P + + S D+T+ +W + G+ + L GH + +
Sbjct: 172 IQGHLGWVRSVAFDPS-NEWFCTGSADRTIKIWDVAT-----GVLKLTLTGHIEQVRGLA 225
Query: 243 LSS 251
+S+
Sbjct: 226 VSN 228
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/77 (29%), Positives = 37/77 (48%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
Y + S DKT+++W++ K + H + V FSVD +V+ S D T +LW+ A
Sbjct: 225 YLATASSDKTVKIWNVDGFKLEKVLTGHQRWVWDCVFSVDGEFLVTASSDMTARLWSMPA 284
Query: 440 ECKYTIQDDGHSDWVSC 490
+ + H V C
Sbjct: 285 GKEVKVYQGHHKATVCC 301
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/60 (30%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAG--KTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
L+ + + +RL+D+ + + ++ HT +V++V F D + + SGS D T+K+W+ A
Sbjct: 50 LAAACNPHIRLFDVNSNSPQPVMTYDSHTNNVMAVGFQCDAKWMYSGSEDGTVKIWDLRA 109
Score = 36.3 bits (80), Expect = 0.018
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
Frame = +2
Query: 287 TLRLWDLAAGKTT-------RRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAEC 445
T +W L GK T + + H +L S N+ + + S DKT+K+WN +
Sbjct: 185 TCYVWRLLRGKQTMTEFEPLHKLQAHNGHILKCLLSPANKYLATASSDKTVKIWN-VDGF 243
Query: 446 KYTIQDDGHSDWV-SCV 493
K GH WV CV
Sbjct: 244 KLEKVLTGHQRWVWDCV 260
Score = 35.9 bits (79), Expect = 0.024
Identities = 17/57 (29%), Positives = 32/57 (56%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
SGS D T+++WDL A + +E V +V + +++SG ++ I++W+ A
Sbjct: 95 SGSEDGTVKIWDLRAPGCQKEYES-VAAVNTVVLHPNQTELISGDQNGNIRVWDLRA 150
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVA 367
+ ++ S D T RLW + AGK + ++ H K + A
Sbjct: 267 FLVTASSDMTARLWSMPAGKEVKVYQGHHKATVCCA 302
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/83 (30%), Positives = 43/83 (51%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
+ +S ++D+T++LWDL G T T + ++ S+D + SG D ++LW+ +
Sbjct: 330 HVVSAAYDRTIKLWDLHKGYCTNTVL-FTSNCNAICLSIDGLTVFSGHMDGNLRLWD-IQ 387
Query: 440 ECKYTIQDDGHSDWVSCVRFSPN 508
K + GHS V+ V S N
Sbjct: 388 TGKLLSEVAGHSSAVTSVSLSRN 410
Score = 41.9 bits (94), Expect = 4e-04
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 5/80 (6%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT-LAEC 445
SG D LRLWD+ GK H+ V SV+ S + +I++ RD +++T E
Sbjct: 374 SGHMDGNLRLWDIQTGKLLSEVAGHSSAVTSVSLSRNGNRILTSGRDNVHNVFDTRTLEI 433
Query: 446 KYTIQDDGH---SDWV-SCV 493
T++ G+ S+W SC+
Sbjct: 434 CGTLRASGNRLASNWSRSCI 453
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS-VDNRQIVSGSRDKTIKLWN 430
++ + L +WD+++G+ HT V +V S +R +VS + D+TIKLW+
Sbjct: 289 IAATSSNNLFVWDVSSGRVRHTLTGHTDKVCAVDVSKFSSRHVVSAAYDRTIKLWD 344
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/79 (21%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN-TLAEC 445
+G D+ +++WD +G + ++L +A + DN+ +++ + + +W+ +
Sbjct: 248 TGGQDRAVKMWDTNSGTLIKSLYGSLGNILDMAVTHDNKSVIAATSSNNLFVWDVSSGRV 307
Query: 446 KYTIQDDGHSDWVSCVRFS 502
++T+ GH+D V V S
Sbjct: 308 RHTL--TGHTDKVCAVDVS 324
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/30 (33%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +1
Query: 487 MCQI-LTQYANPIIVSCGWDRTVKVWHLTK 573
+C + ++++++ +VS +DRT+K+W L K
Sbjct: 318 VCAVDVSKFSSRHVVSAAYDRTIKLWDLHK 347
>At4g04940.1 68417.m00718 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats
Length = 910
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQ 460
D +RL+D+ K R F HT + + FS D + ++S S D ++++W+ + +
Sbjct: 536 DFVIRLYDVVTLKMVREFRGHTDRITDLCFSEDGKWVISSSMDGSLRIWDVILAKQI--- 592
Query: 461 DDGHSDW-VSCVRFSPNM 511
D H D ++ + SPNM
Sbjct: 593 DGVHVDVPITALSLSPNM 610
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 353 VLSVAFSVDNRQIV-SGSRDKTIKLWNTLAECKYTIQDDGHSDWVSCVRFSPNMP 514
V +++FS D R ++ SG I +WN + ++ D H + + F N P
Sbjct: 227 VTALSFSTDGRPLLASGGSFGVISIWNLNKKRLQSVIRDAHDSSIISLNFLANEP 281
>At4g05410.1 68417.m00823 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); U3
snoRNP-associated 55-kDa protein, Homo sapiens,
gb:NP_004695; Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) [Podospora anserina]
Length = 504
Score = 45.6 bits (103), Expect = 3e-05
Identities = 19/71 (26%), Positives = 37/71 (52%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
Y +G D+ + +WD+ + + F H V + F ++ SGS D+T+K+WN +
Sbjct: 236 YLATGGVDRHVHIWDVRTREHVQAFPGHRNTVSCLCFRYGTSELYSGSFDRTVKVWN-VE 294
Query: 440 ECKYTIQDDGH 472
+ + ++ GH
Sbjct: 295 DKAFITENHGH 305
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/80 (26%), Positives = 38/80 (47%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECK 448
SGS+D+T+++W++ H ++L++ R + G RD+T+ L++ + E
Sbjct: 281 SGSFDRTVKVWNVEDKAFITENHGHQGEILAIDALRKERALTVG-RDRTM-LYHKVPEST 338
Query: 449 YTIQDDGHSDWVSCVRFSPN 508
I S SC S N
Sbjct: 339 RMIYRAPASSLESCCFISDN 358
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 341 HTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
H + V+SVA S D+ + S S+D TI W+
Sbjct: 160 HRRSVVSVALSDDDSRGFSASKDGTIMHWD 189
>At3g53390.1 68416.m05892 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 558
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/80 (27%), Positives = 42/80 (52%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQ 460
D LR++D K + + +L ++S+D + I++G D +++W+ + + K
Sbjct: 324 DGYLRIFDFLTQKLVCGGKSYYGALLCCSWSMDGKYILTGGEDDLVQVWS-MEDRKVVAW 382
Query: 461 DDGHSDWVSCVRFSPNMPTP 520
+GH+ WVS V F N +P
Sbjct: 383 GEGHNSWVSGVAFDSNWSSP 402
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 45.2 bits (102), Expect = 4e-05
Identities = 25/85 (29%), Positives = 39/85 (45%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECK 448
+GS D+T+++WD+A G H V +A S + + S DK +K W+ L + K
Sbjct: 187 TGSADRTIKIWDVATGVLKLTLTGHIGQVRGLAVSNRHTYMFSAGDDKQVKCWD-LEQNK 245
Query: 449 YTIQDDGHSDWVSCVRFSPNMPTPL 523
GH V C+ P + L
Sbjct: 246 VIRSYHGHLHGVYCLALHPTLDVVL 270
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
L+G D R+WD+ K H DV SV + Q+++GS D TIK W+
Sbjct: 270 LTGGRDSVCRVWDIRT-KMQIFVLPHDSDVFSVLARPTDPQVITGSHDSTIKFWD 323
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIK 421
++GS D T++ WDL GK+ +H K V ++A VS S D K
Sbjct: 311 ITGSHDSTIKFWDLRYGKSMATITNHKKTVRAMALHPKENDFVSASADNIKK 362
Score = 34.3 bits (75), Expect = 0.073
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +2
Query: 308 AAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
A K R + H V SVAF N +GS D+TIK+W+
Sbjct: 158 APWKNYRVLQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWD 198
Score = 31.1 bits (67), Expect = 0.68
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +3
Query: 63 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDVV 242
L+GH GWV +A +P + + S D+T+ +W + G+ + L GH + +
Sbjct: 166 LQGHLGWVRSVAFDPS-NEWFCTGSADRTIKIWDVAT-----GVLKLTLTGHIGQVRGLA 219
Query: 243 LSS 251
+S+
Sbjct: 220 VSN 222
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 45.2 bits (102), Expect = 4e-05
Identities = 25/81 (30%), Positives = 46/81 (56%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAEC 445
+SGS D T +LWD+ + F D + + +V+FS +I +G D +K+W+ L +
Sbjct: 155 ISGSDDGTAKLWDMRQRGAIQTFPDKYQ-ITAVSFSDAADKIFTGGVDNDVKVWD-LRKG 212
Query: 446 KYTIQDDGHSDWVSCVRFSPN 508
+ T+ +GH D ++ + SP+
Sbjct: 213 EATMTLEGHQDTITGMSLSPD 233
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQ-IVSGSRDKTIKLWN 430
+S S DKT+R WD+ GK ++ +H+ V S + I+SGS D T KLW+
Sbjct: 112 VSASPDKTVRAWDVETGKQIKKMAEHSSFVNSCCPTRRGPPLIISGSDDGTAKLWD 167
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAG-KTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
SGS D+ + LW + K + H +L + ++ D QIVS S DKT++ W+
Sbjct: 70 SGSHDREIFLWRVHGDCKNFMVLKGHKNAILDLHWTSDGSQIVSASPDKTVRAWD 124
Score = 36.7 bits (81), Expect = 0.014
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
+G D +++WDL G+ T E H + ++ S D +++ D + +W+
Sbjct: 197 TGGVDNDVKVWDLRKGEATMTLEGHQDTITGMSLSPDGSYLLTNGMDNKLCVWD 250
Score = 31.5 bits (68), Expect = 0.51
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 341 HTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSD 478
H V ++ F+ I SGS D+ I LW +CK + GH +
Sbjct: 52 HPSAVYTMKFNPAGTLIASGSHDREIFLWRVHGDCKNFMVLKGHKN 97
Score = 31.1 bits (67), Expect = 0.68
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKL 424
+GS D+ + +WD + +T + HT V F I S S DK I L
Sbjct: 289 AGSSDRMVHIWDTTSRRTIYKLPGHTGSVNECVFHPTEPIIGSCSSDKNIYL 340
>At2g37670.1 68415.m04620 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similiar to rab11 binding
protein (GI:4512103) [Bos taurus]
Length = 903
Score = 45.2 bits (102), Expect = 4e-05
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS-VDNRQIVSGSRDKTIKLWNTLAE 442
LS S DKT+RLWD+ KT + H V + FS VD +SGS D I++W+ +
Sbjct: 521 LSSSMDKTVRLWDIET-KTCLKLFAHNDYVTCIQFSPVDENYFLSGSLDAKIRIWS--IQ 577
Query: 443 CKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKL 583
++ ++ + V+ ++P+ L+ G + R+ + +CKL
Sbjct: 578 DRHVVEWSDLHEMVTAACYTPDGQGALIGSHKG--ICRAYDTEDCKL 622
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/55 (34%), Positives = 37/55 (67%)
Frame = +2
Query: 341 HTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSCVRFSP 505
H +L +++S ++ ++S S DKT++LW+ E K ++ H+D+V+C++FSP
Sbjct: 505 HLDAILDLSWS-KSQLLLSSSMDKTVRLWD--IETKTCLKLFAHNDYVTCIQFSP 556
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTL 436
NY LSGS D +R+W + + + D + V + ++ D + + GS + ++T
Sbjct: 560 NYFLSGSLDAKIRIWSI-QDRHVVEWSDLHEMVTAACYTPDGQGALIGSHKGICRAYDT- 617
Query: 437 AECK 448
+CK
Sbjct: 618 EDCK 621
>At2g26490.1 68415.m03178 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
related to En/Spm transposon family of maize
Length = 465
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/62 (37%), Positives = 31/62 (50%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECK 448
S SWD+T+++W +A K H V SV S + SGS D T+K W + K
Sbjct: 223 SASWDRTIKVWRIADSKCLESIPAHDDAVNSVV-STTEAIVFSGSADGTVKAWKRDQQGK 281
Query: 449 YT 454
YT
Sbjct: 282 YT 283
Score = 27.9 bits (59), Expect = 6.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 520 IIVSCGWDRTVKVWHL 567
++ S WDRT+KVW +
Sbjct: 220 LLYSASWDRTIKVWRI 235
Score = 27.9 bits (59), Expect = 6.3
Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 11/97 (11%)
Frame = +2
Query: 170 QRRKQLRYTSKAFIRSFALHF*CCAV**RNYALSGSWDKTLRLWDLAAGKTT--RRFEDH 343
+R KQL Y ++ L C V + SGS DKT+ +W T H
Sbjct: 323 EREKQLNYGG--ILKGHKLAVLCLEVA-GSLVFSGSADKTICVWKRDGNIHTCLSVLTGH 379
Query: 344 TKDVLSVAFSVDNRQ---------IVSGSRDKTIKLW 427
T V +A D + SGS DK++K+W
Sbjct: 380 TGPVKCLAVEADREASERRDKKWIVYSGSLDKSVKVW 416
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/82 (28%), Positives = 44/82 (53%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTL 436
NYAL+ D+T+RLW+ G + ++ H ++V V + DN + S D+ + W+ +
Sbjct: 31 NYALTCGKDRTIRLWNPHRGILIKTYKSHGREVRDVHVTSDNAKFCSCGGDRQVYYWD-V 89
Query: 437 AECKYTIQDDGHSDWVSCVRFS 502
+ + + GH V+ V+F+
Sbjct: 90 STGRVIRKFRGHDGEVNAVKFN 111
Score = 40.7 bits (91), Expect = 8e-04
Identities = 14/50 (28%), Positives = 31/50 (62%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
D+ + WD++ G+ R+F H +V +V F+ + +VS D+++++W+
Sbjct: 81 DRQVYYWDVSTGRVIRKFRGHDGEVNAVKFNDSSSVVVSAGFDRSLRVWD 130
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +2
Query: 236 CCAV**RNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKT 415
CC + + GS D + WDL K +F H V SV++ +++ S D T
Sbjct: 234 CCLTNSDAHVIGGSEDGLVFFWDLVDAKVLSKFRAHDLVVTSVSYHPKEDCMLTSSVDGT 293
Query: 416 IKLW 427
I++W
Sbjct: 294 IRVW 297
Score = 30.7 bits (66), Expect = 0.90
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +3
Query: 48 KLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWK 164
K+ R H+ VT ++ +PK D +L+SS D T+ VWK
Sbjct: 261 KVLSKFRAHDLVVTSVSYHPK-EDCMLTSSVDGTIRVWK 298
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 317 KTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
K + H VL+ F+ D ++ +D+TI+LWN
Sbjct: 9 KEAHILKGHEGAVLAARFNGDGNYALTCGKDRTIRLWN 46
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 44.8 bits (101), Expect = 5e-05
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFED---HTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
+SG D +R+WD GK ++ ++ H + + S+ + D+ ++GS DKT KLW+
Sbjct: 191 VSGGEDAAIRIWDAETGKLLKQSDEEVGHKEAITSLCKAADDSHFLTGSHDKTAKLWD 248
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
D T +W G+ + H+ V S D+ ++++GS D+T KLW+
Sbjct: 58 DHTPTVWFADNGERLGTYRGHSGAVWCCDISRDSSRLITGSADQTAKLWD 107
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV 394
++GS D+T +LWD+ +GK F+ SV FSV + V
Sbjct: 95 ITGSADQTAKLWDVKSGKELFTFK-FGAPARSVDFSVGDHLAV 136
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 44.8 bits (101), Expect = 5e-05
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Frame = +2
Query: 269 SGSWDKTLRLWDLA-AGKTTRRFEDHTKDVLSVAFSVDNRQIV-SGSRDKTIKLWNTLAE 442
+ S+DKT+++WD + G R H V+S+ F +++ S + I+ W+ A
Sbjct: 567 TSSFDKTIKIWDASDPGYFLRTISGHAAPVMSIDFHPKKTELLCSCDSNNDIRFWDINAS 626
Query: 443 CKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHLGHSGYLNT 622
C ++ G S + VRF P L T +S I N K GHS +++
Sbjct: 627 CVRAVK--GAS---TQVRFQPRTGQFLAAASENT-VSIFDIENNNKRVNIFKGHSSNVHS 680
Query: 623 VTVSPDGSLCAS 658
V SP+G L AS
Sbjct: 681 VCWSPNGELVAS 692
Score = 43.2 bits (97), Expect = 2e-04
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 1/125 (0%)
Frame = +2
Query: 134 LSRQNSHRVEADQRRKQLRYTSKAFIRSFALHF*CCAV**RNYAL-SGSWDKTLRLWDLA 310
L R +S E K + + IR A CC+ L S DK + +W++
Sbjct: 482 LKRNSSVHTETS---KPFSFNEVSCIRKSASKVICCSFSYDGKLLASAGHDKKVFIWNME 538
Query: 311 AGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSC 490
+ E+H + V F ++ Q+ + S DKTIK+W+ + GH+ V
Sbjct: 539 TLQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTISGHAAPVMS 598
Query: 491 VRFSP 505
+ F P
Sbjct: 599 IDFHP 603
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/76 (23%), Positives = 33/76 (43%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQ 460
+ ++LW L++G + SV F ++ + I+LWNT+ T+
Sbjct: 695 EDAVKLWSLSSGDCIHELSNSGNKFHSVVFHPSYPDLLVIGGYQAIELWNTMENKCMTVA 754
Query: 461 DDGHSDWVSCVRFSPN 508
GH +S + SP+
Sbjct: 755 --GHECVISALAQSPS 768
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 44.8 bits (101), Expect = 5e-05
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Frame = +2
Query: 269 SGSWDKTLRLWDLA-AGKTTRRFEDHTKDVLSVAFSVDNRQIV-SGSRDKTIKLWNTLAE 442
+ S+DKT+++WD + G R H V+S+ F +++ S + I+ W+ A
Sbjct: 569 TSSFDKTIKIWDASDPGYFLRTISGHAAPVMSIDFHPKKTELLCSCDSNNDIRFWDINAS 628
Query: 443 CKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHLGHSGYLNT 622
C ++ G S + VRF P L T +S I N K GHS +++
Sbjct: 629 CVRAVK--GAS---TQVRFQPRTGQFLAAASENT-VSIFDIENNNKRVNIFKGHSSNVHS 682
Query: 623 VTVSPDGSLCAS 658
V SP+G L AS
Sbjct: 683 VCWSPNGELVAS 694
Score = 43.2 bits (97), Expect = 2e-04
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 1/125 (0%)
Frame = +2
Query: 134 LSRQNSHRVEADQRRKQLRYTSKAFIRSFALHF*CCAV**RNYAL-SGSWDKTLRLWDLA 310
L R +S E K + + IR A CC+ L S DK + +W++
Sbjct: 484 LKRNSSVHTETS---KPFSFNEVSCIRKSASKVICCSFSYDGKLLASAGHDKKVFIWNME 540
Query: 311 AGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSC 490
+ E+H + V F ++ Q+ + S DKTIK+W+ + GH+ V
Sbjct: 541 TLQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTISGHAAPVMS 600
Query: 491 VRFSP 505
+ F P
Sbjct: 601 IDFHP 605
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/76 (23%), Positives = 33/76 (43%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQ 460
+ ++LW L++G + SV F ++ + I+LWNT+ T+
Sbjct: 697 EDAVKLWSLSSGDCIHELSNSGNKFHSVVFHPSYPDLLVIGGYQAIELWNTMENKCMTVA 756
Query: 461 DDGHSDWVSCVRFSPN 508
GH +S + SP+
Sbjct: 757 --GHECVISALAQSPS 770
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 44.8 bits (101), Expect = 5e-05
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Frame = +2
Query: 269 SGSWDKTLRLWDLA-AGKTTRRFEDHTKDVLSVAFSVDNRQIV-SGSRDKTIKLWNTLAE 442
+ S+DKT+++WD + G R H V+S+ F +++ S + I+ W+ A
Sbjct: 569 TSSFDKTIKIWDASDPGYFLRTISGHAAPVMSIDFHPKKTELLCSCDSNNDIRFWDINAS 628
Query: 443 CKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHLGHSGYLNT 622
C ++ G S + VRF P L T +S I N K GHS +++
Sbjct: 629 CVRAVK--GAS---TQVRFQPRTGQFLAAASENT-VSIFDIENNNKRVNIFKGHSSNVHS 682
Query: 623 VTVSPDGSLCAS 658
V SP+G L AS
Sbjct: 683 VCWSPNGELVAS 694
Score = 43.2 bits (97), Expect = 2e-04
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 1/125 (0%)
Frame = +2
Query: 134 LSRQNSHRVEADQRRKQLRYTSKAFIRSFALHF*CCAV**RNYAL-SGSWDKTLRLWDLA 310
L R +S E K + + IR A CC+ L S DK + +W++
Sbjct: 484 LKRNSSVHTETS---KPFSFNEVSCIRKSASKVICCSFSYDGKLLASAGHDKKVFIWNME 540
Query: 311 AGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSC 490
+ E+H + V F ++ Q+ + S DKTIK+W+ + GH+ V
Sbjct: 541 TLQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTISGHAAPVMS 600
Query: 491 VRFSP 505
+ F P
Sbjct: 601 IDFHP 605
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/76 (23%), Positives = 33/76 (43%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQ 460
+ ++LW L++G + SV F ++ + I+LWNT+ T+
Sbjct: 697 EDAVKLWSLSSGDCIHELSNSGNKFHSVVFHPSYPDLLVIGGYQAIELWNTMENKCMTVA 756
Query: 461 DDGHSDWVSCVRFSPN 508
GH +S + SP+
Sbjct: 757 --GHECVISALAQSPS 770
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 44.8 bits (101), Expect = 5e-05
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Frame = +2
Query: 269 SGSWDKTLRLWDLA-AGKTTRRFEDHTKDVLSVAFSVDNRQIV-SGSRDKTIKLWNTLAE 442
+ S+DKT+++WD + G R H V+S+ F +++ S + I+ W+ A
Sbjct: 569 TSSFDKTIKIWDASDPGYFLRTISGHAAPVMSIDFHPKKTELLCSCDSNNDIRFWDINAS 628
Query: 443 CKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHLGHSGYLNT 622
C ++ G S + VRF P L T +S I N K GHS +++
Sbjct: 629 CVRAVK--GAS---TQVRFQPRTGQFLAAASENT-VSIFDIENNNKRVNIFKGHSSNVHS 682
Query: 623 VTVSPDGSLCAS 658
V SP+G L AS
Sbjct: 683 VCWSPNGELVAS 694
Score = 43.2 bits (97), Expect = 2e-04
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 1/125 (0%)
Frame = +2
Query: 134 LSRQNSHRVEADQRRKQLRYTSKAFIRSFALHF*CCAV**RNYAL-SGSWDKTLRLWDLA 310
L R +S E K + + IR A CC+ L S DK + +W++
Sbjct: 484 LKRNSSVHTETS---KPFSFNEVSCIRKSASKVICCSFSYDGKLLASAGHDKKVFIWNME 540
Query: 311 AGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSC 490
+ E+H + V F ++ Q+ + S DKTIK+W+ + GH+ V
Sbjct: 541 TLQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTISGHAAPVMS 600
Query: 491 VRFSP 505
+ F P
Sbjct: 601 IDFHP 605
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/76 (23%), Positives = 33/76 (43%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQ 460
+ ++LW L++G + SV F ++ + I+LWNT+ T+
Sbjct: 697 EDAVKLWSLSSGDCIHELSNSGNKFHSVVFHPSYPDLLVIGGYQAIELWNTMENKCMTVA 756
Query: 461 DDGHSDWVSCVRFSPN 508
GH +S + SP+
Sbjct: 757 --GHECVISALAQSPS 770
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 44.8 bits (101), Expect = 5e-05
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Frame = +2
Query: 269 SGSWDKTLRLWDLA-AGKTTRRFEDHTKDVLSVAFSVDNRQIV-SGSRDKTIKLWNTLAE 442
+ S+DKT+++WD + G R H V+S+ F +++ S + I+ W+ A
Sbjct: 569 TSSFDKTIKIWDASDPGYFLRTISGHAAPVMSIDFHPKKTELLCSCDSNNDIRFWDINAS 628
Query: 443 CKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHLGHSGYLNT 622
C ++ G S + VRF P L T +S I N K GHS +++
Sbjct: 629 CVRAVK--GAS---TQVRFQPRTGQFLAAASENT-VSIFDIENNNKRVNIFKGHSSNVHS 682
Query: 623 VTVSPDGSLCAS 658
V SP+G L AS
Sbjct: 683 VCWSPNGELVAS 694
Score = 43.2 bits (97), Expect = 2e-04
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 1/125 (0%)
Frame = +2
Query: 134 LSRQNSHRVEADQRRKQLRYTSKAFIRSFALHF*CCAV**RNYAL-SGSWDKTLRLWDLA 310
L R +S E K + + IR A CC+ L S DK + +W++
Sbjct: 484 LKRNSSVHTETS---KPFSFNEVSCIRKSASKVICCSFSYDGKLLASAGHDKKVFIWNME 540
Query: 311 AGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSC 490
+ E+H + V F ++ Q+ + S DKTIK+W+ + GH+ V
Sbjct: 541 TLQVESTPEEHAHIITDVRFRPNSTQLATSSFDKTIKIWDASDPGYFLRTISGHAAPVMS 600
Query: 491 VRFSP 505
+ F P
Sbjct: 601 IDFHP 605
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/76 (23%), Positives = 33/76 (43%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQ 460
+ ++LW L++G + SV F ++ + I+LWNT+ T+
Sbjct: 697 EDAVKLWSLSSGDCIHELSNSGNKFHSVVFHPSYPDLLVIGGYQAIELWNTMENKCMTVA 756
Query: 461 DDGHSDWVSCVRFSPN 508
GH +S + SP+
Sbjct: 757 --GHECVISALAQSPS 770
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 44.4 bits (100), Expect = 7e-05
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Frame = +2
Query: 254 RNYALSGSWDKTLRLW--DLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW 427
++Y +GS D TL+ W D A + FE H V A + ++ +VS S D T+K W
Sbjct: 52 QSYLFTGSRDGTLKRWAFDEDATFCSATFESHVDWVNDAALAGEST-LVSCSSDTTVKTW 110
Query: 428 NTLAE--CKYTIQDDGHSDWVSCV 493
+ L++ C T++ HSD+V+C+
Sbjct: 111 DGLSDGVCTRTLRQ--HSDYVTCL 132
Score = 44.0 bits (99), Expect = 9e-05
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT-LAE 442
+SG +K LR+WD G + + HT +V + R +SGS D I+LW+
Sbjct: 229 VSGGTEKVLRVWDPRTGSKSMKLRGHTDNVRVLLLDSTGRFCLSGSSDSMIRLWDLGQQR 288
Query: 443 CKYTIQDDGHSDW 481
C +T S W
Sbjct: 289 CLHTYAVHTDSVW 301
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKL 424
+ LSGS D +RLWDL + + HT V ++A + + SG RD+ + L
Sbjct: 269 FCLSGSSDSMIRLWDLGQQRCLHTYAVHTDSVWALACNPSFSHVYSGGRDQCLYL 323
Score = 31.9 bits (69), Expect = 0.39
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 350 DVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKY-TIQDDGHSDWVS 487
DVL + S D + +GSRD T+K W + + + + H DWV+
Sbjct: 42 DVLKSSVSNDQSYLFTGSRDGTLKRWAFDEDATFCSATFESHVDWVN 88
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = +2
Query: 314 GKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSD 478
G T + H + V ++A + +VSG +K +++W+ K +++ GH+D
Sbjct: 203 GYTPTIAKGHKESVYALAMNDTGTMLVSGGTEKVLRVWDPRTGSK-SMKLRGHTD 256
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 44.4 bits (100), Expect = 7e-05
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Frame = +2
Query: 254 RNYALSGSWDKTLRLW--DLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW 427
++Y +GS D TL+ W D A + FE H V A + ++ +VS S D T+K W
Sbjct: 52 QSYLFTGSRDGTLKRWAFDEDATFCSATFESHVDWVNDAALAGEST-LVSCSSDTTVKTW 110
Query: 428 NTLAE--CKYTIQDDGHSDWVSCV 493
+ L++ C T++ HSD+V+C+
Sbjct: 111 DGLSDGVCTRTLRQ--HSDYVTCL 132
Score = 44.0 bits (99), Expect = 9e-05
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT-LAE 442
+SG +K LR+WD G + + HT +V + R +SGS D I+LW+
Sbjct: 229 VSGGTEKVLRVWDPRTGSKSMKLRGHTDNVRVLLLDSTGRFCLSGSSDSMIRLWDLGQQR 288
Query: 443 CKYTIQDDGHSDW 481
C +T S W
Sbjct: 289 CLHTYAVHTDSVW 301
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKL 424
+ LSGS D +RLWDL + + HT V ++A + + SG RD+ + L
Sbjct: 269 FCLSGSSDSMIRLWDLGQQRCLHTYAVHTDSVWALACNPSFSHVYSGGRDQCLYL 323
Score = 31.9 bits (69), Expect = 0.39
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 350 DVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKY-TIQDDGHSDWVS 487
DVL + S D + +GSRD T+K W + + + + H DWV+
Sbjct: 42 DVLKSSVSNDQSYLFTGSRDGTLKRWAFDEDATFCSATFESHVDWVN 88
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = +2
Query: 314 GKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSD 478
G T + H + V ++A + +VSG +K +++W+ K +++ GH+D
Sbjct: 203 GYTPTIAKGHKESVYALAMNDTGTMLVSGGTEKVLRVWDPRTGSK-SMKLRGHTD 256
>At5g66240.2 68418.m08345 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (4 copies, 1 weak); similar to Will die slowly
protein. {Drosophila melanogaster} (SP:Q9V3J8)
{Drosophila melanogaster}
Length = 331
Score = 44.0 bits (99), Expect = 9e-05
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
Y+ WD +LRL L K R F+ H V+S++ +SGS D+T+ LW+
Sbjct: 92 YSSRNGWDDSLRLLSLHDNKYLRYFKGHHDRVVSLSLCSGGECFISGSLDRTVLLWDQRV 151
Query: 440 E-CKYTIQDDG 469
E C+ ++ G
Sbjct: 152 EKCQGLLRVQG 162
>At5g66240.1 68418.m08344 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (4 copies, 1 weak); similar to Will die slowly
protein. {Drosophila melanogaster} (SP:Q9V3J8)
{Drosophila melanogaster}
Length = 328
Score = 44.0 bits (99), Expect = 9e-05
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
Y+ WD +LRL L K R F+ H V+S++ +SGS D+T+ LW+
Sbjct: 89 YSSRNGWDDSLRLLSLHDNKYLRYFKGHHDRVVSLSLCSGGECFISGSLDRTVLLWDQRV 148
Query: 440 E-CKYTIQDDG 469
E C+ ++ G
Sbjct: 149 EKCQGLLRVQG 159
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/58 (36%), Positives = 39/58 (67%)
Frame = +2
Query: 332 FEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSCVRFSP 505
F H DVL +++S ++ ++S S DKT++LW+ E + ++ H+D+V+CV+F+P
Sbjct: 515 FTGHLDDVLDLSWS-RSQLLLSSSMDKTVRLWD--IETQSCLKLFAHNDYVTCVQFNP 569
Score = 44.0 bits (99), Expect = 9e-05
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS-VDNRQIVSGSRDKTIKLWNTLAE 442
LS S DKT+RLWD+ + F H V V F+ +D +SGS D I++WN
Sbjct: 534 LSSSMDKTVRLWDIETQSCLKLFA-HNDYVTCVQFNPLDEDYFISGSLDAKIRIWN--IS 590
Query: 443 CKYTIQDDGHSDWVSCVRFSPN 508
+ ++ + + V+ V ++P+
Sbjct: 591 NRQVVEWNDLKEMVTAVCYTPD 612
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/64 (25%), Positives = 35/64 (54%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTL 436
+Y +SGS D +R+W++ + + + D + V +V ++ D + GS + +L++
Sbjct: 573 DYFISGSLDAKIRIWNI-SNRQVVEWNDLKEMVTAVCYTPDGQAAFVGSINGHCRLYSA- 630
Query: 437 AECK 448
+CK
Sbjct: 631 EDCK 634
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 63 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLT 170
L HN +VT + NP D +S S D + +W ++
Sbjct: 555 LFAHNDYVTCVQFNPLDEDYFISGSLDAKIRIWNIS 590
>At2g37160.1 68415.m04559 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Dystrophia myotonica-containing WD repeat
motif protein DMR-N9 protein (DMWD) (DM9) (SP:Q08274)
[Mus musculus]; simlar to DMR protein GI:18028289 [Homo
sapiens];
Length = 544
Score = 44.0 bits (99), Expect = 9e-05
Identities = 21/80 (26%), Positives = 42/80 (52%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQ 460
D LR++D + K + + +L A+S+D + +++G D +++W+ + + K
Sbjct: 324 DGYLRIFDFSTQKLVCGVKSYYGALLCCAWSMDGKYLLTGGEDDLVQVWS-MEDRKVVAW 382
Query: 461 DDGHSDWVSCVRFSPNMPTP 520
+GH+ WVS V F +P
Sbjct: 383 GEGHNSWVSGVAFDSYWSSP 402
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +2
Query: 254 RNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS-VDNRQIVSGSRDKTIKL 424
RN S S DK +++WD+A G E HTK+V +VA++ ++SGS D+T+ L
Sbjct: 246 RNILASASADKKVKVWDVATGTCKITMEHHTKEVQAVAWNHYAPEVLLSGSFDQTVVL 303
Score = 35.9 bits (79), Expect = 0.024
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTT--RRFEDHTKDVLSVAFSVDNRQIVS-GSRDKTIKLW 427
N +GS D+T++LWDL+ + + + + +AFS DN +++ G +KLW
Sbjct: 383 NLLATGSKDRTVKLWDLSNNEPSCIATHNPNAGGLFFIAFSPDNPFLLAMGGVMGELKLW 442
Query: 428 NTLAE 442
+TL++
Sbjct: 443 DTLSD 447
Score = 34.7 bits (76), Expect = 0.055
Identities = 12/40 (30%), Positives = 26/40 (65%)
Frame = +3
Query: 60 TLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDE 179
T+ GH+ T ++ N P+++ + S+D+T+ +W L+ +E
Sbjct: 364 TINGHDEAATSVSYNISAPNLLATGSKDRTVKLWDLSNNE 403
>At5g43920.1 68418.m05372 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 523
Score = 43.2 bits (97), Expect = 2e-04
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Frame = +2
Query: 290 LRLWDLAAG-KTTRRFEDH--TKDVLSVAFS-VDNRQIVSGSRDKTIKLWNTLAECKYTI 457
+ LWDLA K +F H +K V+ F +D+ I SGS D + +WN L K
Sbjct: 421 IHLWDLAGEWKQPLKFSGHRQSKYVIRSCFGGLDSSFIASGSEDSQVYIWN-LKNTKPLE 479
Query: 458 QDDGHSDWVSCVRFSPNMPTPL 523
GHS V+CV ++P P L
Sbjct: 480 VLSGHSMTVNCVSWNPKNPRML 501
Score = 35.9 bits (79), Expect = 0.024
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDN-RQIVSGSRDKTIKLW 427
++ SGS D + +W+L K H+ V V+++ N R + S S D+TI++W
Sbjct: 456 SFIASGSEDSQVYIWNLKNTKPLEVLSGHSMTVNCVSWNPKNPRMLASASDDQTIRIW 513
Score = 34.3 bits (75), Expect = 0.073
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 63 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVW 161
L GH+ V ++ NPK P M+ S+S D+T+ +W
Sbjct: 481 LSGHSMTVNCVSWNPKNPRMLASASDDQTIRIW 513
>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 709
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +2
Query: 254 RNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS-VDNRQIVSGSRDKTIKLWN 430
+ + LS S D+T+RLW + + R H V VAF+ VD+ +SGS D +++W+
Sbjct: 374 KGFLLSSSVDETVRLWRVGSSDECIRVFSHKSFVTCVAFNPVDDNYFISGSIDGKVRIWD 433
Score = 31.1 bits (67), Expect = 0.68
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT 433
NY +SGS D +R+WD++ + + D + V ++ + D + V GS + ++T
Sbjct: 418 NYFISGSIDGKVRIWDVSQFRVV-DYTDIRQIVTALCYRPDGKGAVVGSMTGECRFYHT 475
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
Y + S DKT+++W+L K + H + V FS+D +V+ S D T +LW+ A
Sbjct: 231 YLATASSDKTVKIWNLDGFKLEKVLTGHERWVWDCDFSMDGEYLVTASSDTTARLWSMRA 290
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Frame = +2
Query: 290 LRLWDLAAGKT---TRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN-TLAECK 448
+RL+DL + R F HTK+V++V F + SGS D ++K+W+ + EC+
Sbjct: 63 IRLFDLRSYNPHIPVRNFVSHTKNVMAVGFQYTGHMMYSGSEDGSVKIWDLRVRECQ 119
Score = 35.9 bits (79), Expect = 0.024
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAE 442
SGS D ++++WDL + R F V +V + +++SG ++ I++W+ A+
Sbjct: 101 SGSEDGSVKIWDLRVRECQREFRS-VSPVNTVVLHPNQTELISGDQNGNIRVWDLRAD 157
Score = 35.9 bits (79), Expect = 0.024
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +2
Query: 329 RFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSCVRFS 502
+ + H +L S N+ + + S DKT+K+WN L K GH WV FS
Sbjct: 212 KLQAHNSHILKCLLSPGNKYLATASSDKTVKIWN-LDGFKLEKVLTGHERWVWDCDFS 268
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTK 349
Y ++ S D T RLW + AGK ++ H K
Sbjct: 273 YLVTASSDTTARLWSMRAGKEEMVYQAHRK 302
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 42.7 bits (96), Expect = 2e-04
Identities = 32/81 (39%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTR-RFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAEC 445
SGS D + + D A GKT HT VLSV S D I +GS D+T++LW+ +
Sbjct: 218 SGSDDGHVNMHD-AEGKTLLGSMSGHTSWVLSVDASPDGGAIATGSSDRTVRLWD--LKM 274
Query: 446 KYTIQD-DGHSDWVSCVRFSP 505
+ IQ H+D V V F P
Sbjct: 275 RAAIQTMSNHNDQVWSVAFRP 295
Score = 39.1 bits (87), Expect = 0.003
Identities = 32/105 (30%), Positives = 52/105 (49%)
Frame = +2
Query: 347 KDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSCVRFSPNMPTPLL 526
K VLSVA+S + +++ GS D TI +++ + K Q +GH+ V + FSP P L
Sbjct: 159 KFVLSVAWSPNGKRLACGSMDGTICVFD-VDRSKLLHQLEGHNMPVRSLVFSPVDPRVLF 217
Query: 527 YPVVGTELSRSGISLNCKLKINHLGHSGYLNTVTVSPDGSLCASG 661
++ L + GH+ ++ +V SPDG A+G
Sbjct: 218 SGSDDGHVNMHDAEGKTLLG-SMSGHTSWVLSVDASPDGGAIATG 261
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 36 SETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKL 167
+E L G++ GH WV + +P I + S D+T+ +W L
Sbjct: 230 AEGKTLLGSMSGHTSWVLSVDASPD-GGAIATGSSDRTVRLWDL 272
>At4g18905.1 68417.m02787 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 494
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +2
Query: 254 RNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS-VDNRQIVSGSRDKTI 418
RN S S DK +++WD+A G E HTK+V +VA++ ++SGS D+T+
Sbjct: 278 RNILASASADKKVKVWDVATGTCKITMEHHTKEVQAVAWNHYAPEVLLSGSFDQTV 333
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTT--RRFEDHTKDVLSVAFSVDNRQIVS-GSRDKTIKLW 427
N +GS DK+++LWDL+ + + + + V S++F+VDN +++ G + +W
Sbjct: 418 NLLATGSMDKSVKLWDLSNNEPSCIATHQPNAGAVFSISFAVDNPFLLAIGGSKGELHVW 477
Query: 428 NTLAE 442
+TL +
Sbjct: 478 DTLLD 482
>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
receptor (PEX7) identical to peroxisomal targeting
signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
thaliana]; WD-40 repeat protein family member; contains
6 WD-40 repeats (PF00400); similar to peroxismal
targeting signal 2 receptor (PTS2R) (Peroxin-7)
(PEX7)(SP:O00628) [Homo sapiens]
Length = 317
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS-VDNRQIVSGSRDKTIKLWNTLAEC 445
S S D TLR+WD+ +T H ++LS ++ D+ + + S DKT+K+W+ +
Sbjct: 167 SASGDCTLRIWDVREPGSTMIIPAHDFEILSCDWNKYDDCILATSSVDKTVKVWDVRSYR 226
Query: 446 KYTIQDDGHSDWVSCVRFSPN 508
+GH V V+FSP+
Sbjct: 227 VPLAVLNGHGYAVRKVKFSPH 247
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +2
Query: 254 RNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI-VSGSRDKTIKLWN 430
R+ L+ SWD T++LW + + R F++H V ++ + + S S D T+++W+
Sbjct: 119 RDSFLTSSWDDTVKLWAMDRPASVRTFKEHAYCVYQAVWNPKHGDVFASASGDCTLRIWD 178
Score = 31.1 bits (67), Expect = 0.68
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 60 TLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIP 197
T + H V Q NPK+ D+ S+S D TL +W + + IP
Sbjct: 144 TFKEHAYCVYQAVWNPKHGDVFASASGDCTLRIWDVREPGSTMIIP 189
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 42.3 bits (95), Expect = 3e-04
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 7/132 (5%)
Frame = +2
Query: 131 FLSRQNSHRVEADQR----RKQLRYTSKAFIRSFALHF*CCAV**RNYAL-SGSWDKTLR 295
FLS+++ + +A R K +T +R+ CC L S DK
Sbjct: 617 FLSQEDGDQRDAVTRCMDVSKGFTFTEVNSVRASTTKVTCCHFSSDGKMLASAGHDKKAV 676
Query: 296 LWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECK-YTIQD-DG 469
LW K E+HT + + FS ++ + S DKT+++W+ A+ K Y+++ G
Sbjct: 677 LWYTDTMKPKTTLEEHTAMITDIRFSPSQLRLATSSFDKTVRVWD--ADNKGYSLRTFMG 734
Query: 470 HSDWVSCVRFSP 505
HS V+ + F P
Sbjct: 735 HSSMVTSLDFHP 746
Score = 35.1 bits (77), Expect = 0.042
Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 10/140 (7%)
Frame = +2
Query: 269 SGSWDKTLRLWDLA-AGKTTRRFEDHTKDVLSVAFS-VDNRQIVSGSRDKTIKLWNTLAE 442
+ S+DKT+R+WD G + R F H+ V S+ F + + I S D I+ W+
Sbjct: 710 TSSFDKTVRVWDADNKGYSLRTFMGHSSMVTSLDFHPIKDDLICSCDNDNEIRYWSI--- 766
Query: 443 CKYTIQDDGHSDWVSCVRFSPNMPTPLLY-PVVGTELSRSGISLNCKLK-----INHL-- 598
++G SC R T + + P VG L+ S +L L I H
Sbjct: 767 ------NNG-----SCTRVYKGGSTQIRFQPRVGKYLAASSANLVNVLDVETQAIRHSLQ 815
Query: 599 GHSGYLNTVTVSPDGSLCAS 658
GH+ +N+V P G AS
Sbjct: 816 GHANPINSVCWDPSGDFLAS 835
>At3g18860.2 68416.m02396 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW 427
+SGS D + +W+L G+ + + H V VA +DN IVS S D+T+K W
Sbjct: 87 VSGSMDTFVFVWNLMNGENIQTLKGHQMQVTGVA--IDNEDIVSSSVDQTLKRW 138
Score = 36.3 bits (80), Expect = 0.018
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +3
Query: 48 KLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHF 227
KLR L GH+ V I + I +SSRD+T+ VW L + +K L GH+ F
Sbjct: 11 KLRCELHGHDDDVRGICVCND--ENIATSSRDRTIRVWSLDPSDKRKYTSEKILLGHTSF 68
Query: 228 I 230
+
Sbjct: 69 V 69
Score = 35.5 bits (78), Expect = 0.032
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAEC 445
+S S D+TL+ W G+ ++ H + +V + + ++VSGS D ++KLW +
Sbjct: 127 VSSSVDQTLKRW--RNGQLVESWDAHQSPIQAV-IRLPSGELVSGSSDASLKLW----KG 179
Query: 446 KYTIQD-DGHSDWVSCVRFSPNM 511
K ++Q GH+D V + P++
Sbjct: 180 KTSLQTLSGHTDTVRGLAVMPDL 202
>At3g18860.1 68416.m02395 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to phospholipase a-2-activating protein
SP:P27612 from [Mus musculus]
Length = 760
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/54 (38%), Positives = 31/54 (57%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW 427
+SGS D + +W+L G+ + + H V VA +DN IVS S D+T+K W
Sbjct: 87 VSGSMDTFVFVWNLMNGENIQTLKGHQMQVTGVA--IDNEDIVSSSVDQTLKRW 138
Score = 36.3 bits (80), Expect = 0.018
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +3
Query: 48 KLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHF 227
KLR L GH+ V I + I +SSRD+T+ VW L + +K L GH+ F
Sbjct: 11 KLRCELHGHDDDVRGICVCND--ENIATSSRDRTIRVWSLDPSDKRKYTSEKILLGHTSF 68
Query: 228 I 230
+
Sbjct: 69 V 69
Score = 35.5 bits (78), Expect = 0.032
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAEC 445
+S S D+TL+ W G+ ++ H + +V + + ++VSGS D ++KLW +
Sbjct: 127 VSSSVDQTLKRW--RNGQLVESWDAHQSPIQAV-IRLPSGELVSGSSDASLKLW----KG 179
Query: 446 KYTIQD-DGHSDWVSCVRFSPNM 511
K ++Q GH+D V + P++
Sbjct: 180 KTSLQTLSGHTDTVRGLAVMPDL 202
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECK 448
+G D T L+D +G+ H+K V S+ F D +++ S DKT+++W +
Sbjct: 239 TGGIDTTAVLFDRPSGQILSTLTGHSKKVTSIKFVGDTDLVLTASSDKTVRIWGCSEDGN 298
Query: 449 YT 454
YT
Sbjct: 299 YT 300
Score = 37.1 bits (82), Expect = 0.010
Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 9/140 (6%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAA-GKTTRR--FEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN-T 433
L+ S DKT+R+W + G T R +DH+ +V +V N+ VS S D T ++ +
Sbjct: 280 LTASSDKTVRIWGCSEDGNYTSRHTLKDHSAEVRAVTVHATNKYFVSASLDSTWCFYDLS 339
Query: 434 LAECKYTIQDDGHSDW-VSCVRFSPNMPTPLLYPVVGTELSRSGISL-NCKLKINHL--- 598
C + D +D + F P+ ++GT ++S + + + K + N
Sbjct: 340 SGLCLAQVTDASENDVNYTAAAFHPD------GLILGTGTAQSIVKIWDVKSQANVAKFG 393
Query: 599 GHSGYLNTVTVSPDGSLCAS 658
GH+G + +++ S +G A+
Sbjct: 394 GHNGEITSISFSENGYFLAT 413
Score = 31.1 bits (67), Expect = 0.68
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 48 KLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDEN 182
++ TL GH+ VT I D++L++S DKT+ +W + D N
Sbjct: 255 QILSTLTGHSKKVTSIKFVGD-TDLVLTASSDKTVRIWGCSEDGN 298
>At5g50120.1 68418.m06207 transducin family protein / WD-40 repeat
family protein Similar to En/Spm-like transposon protein
(gi:2739374)[Arabidopsis thaliana]; similar to
GTP-binding regulatory protein and WD-repeat protein;
contains 7 WD-40 repeats
Length = 388
Score = 41.1 bits (92), Expect = 6e-04
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW 427
S SWD+TL++W K F + D ++ +N I +GS D+ IK+W
Sbjct: 182 SVSWDRTLKIWRTTDFKCLESFTNAHDDAINAVALSENGDIYTGSSDQRIKVW 234
Score = 32.7 bits (71), Expect = 0.22
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGK---TTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
SG D ++ +W+ G HT+ VL +A D + SGS DKT++LW A
Sbjct: 277 SGGSDGSILVWERDDGGDIVVVGMLRGHTESVLCLAVVSDI--LCSGSADKTVRLWKCSA 334
Query: 440 -ECKYTIQDDGHSDWVSCV 493
+ +GH V C+
Sbjct: 335 KDYSCLAMLEGHLGPVKCL 353
Score = 30.7 bits (66), Expect = 0.90
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 341 HTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTL-AECKYTIQDDGHSDWVSCVRFSPN 508
H V +A S D + S S D+T+K+W T +C + + H D ++ V S N
Sbjct: 164 HVDAVSGLALSRDGTLLYSVSWDRTLKIWRTTDFKCLESF-TNAHDDAINAVALSEN 219
Score = 28.7 bits (61), Expect = 3.6
Identities = 9/35 (25%), Positives = 16/35 (45%)
Frame = +1
Query: 466 WTQRLGVMCQILTQYANPIIVSCGWDRTVKVWHLT 570
W + + + ++ S WDRT+K+W T
Sbjct: 161 WVHHVDAVSGLALSRDGTLLYSVSWDRTLKIWRTT 195
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = +3
Query: 63 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDVV 242
L HN + +A + ++ S D +++VW+ RD+ + L GH+ + +
Sbjct: 255 LSEHNSGINALALSGTNGSLLHSGGSDGSILVWE--RDDGGDIVVVGMLRGHTESVLCLA 312
Query: 243 LSSDVI 260
+ SD++
Sbjct: 313 VVSDIL 318
Score = 27.5 bits (58), Expect = 8.4
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 57 GTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWK 164
G LRGH V +A D++ S S DKT+ +WK
Sbjct: 299 GMLRGHTESVLCLAV---VSDILCSGSADKTVRLWK 331
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 41.1 bits (92), Expect = 6e-04
Identities = 22/84 (26%), Positives = 45/84 (53%)
Frame = +2
Query: 254 RNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT 433
++ +SG D+ ++LWD +G+ H VLSV ++ + +++ S+D+ IKL++
Sbjct: 280 KSLLVSGGKDQLVKLWDTRSGRELCSLHGHKNIVLSVKWNQNGNWLLTASKDQIIKLYD- 338
Query: 434 LAECKYTIQDDGHSDWVSCVRFSP 505
+ K GH+ V+ + + P
Sbjct: 339 IRTMKELQSFRGHTKDVTSLAWHP 362
Score = 31.9 bits (69), Expect = 0.39
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
NY +SG TL+ W H + + ++F + + S S D T+K+W+
Sbjct: 178 NYMVSGDDGGTLKYWQNNMNNVKANKTAHKESIRDLSFCKTDLKFCSCSDDTTVKVWD 235
Score = 31.9 bits (69), Expect = 0.39
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 341 HTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSCVRFSPN 508
H DV SV + +VSG +D+ +KLW+T + + GH + V V+++ N
Sbjct: 267 HGWDVKSVDWHPTKSLLVSGGKDQLVKLWDTRSG-RELCSLHGHKNIVLSVKWNQN 321
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +3
Query: 42 TLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIP 197
T+K + RGH VT +A +P + + +S S D ++ W + + IP
Sbjct: 341 TMKELQSFRGHTKDVTSLAWHPCHEEYFVSGSSDGSICHWIVGHENPQIEIP 392
>At4g34380.1 68417.m04884 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Myosin heavy chain kinase B (MHCK
B).(SP:P90648) [Dictyostelium discoideum]
Length = 495
Score = 40.7 bits (91), Expect = 8e-04
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECK 448
S SWD T+++W +A K H + SV D+ + +GS D T+K+W + K
Sbjct: 252 SSSWDTTIKVWRIADSKCLESIHAHDDAINSVMSGFDD-LVFTGSADGTVKVWKRELQGK 310
Query: 449 YT 454
T
Sbjct: 311 GT 312
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 341 HTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSCV 493
H V S++ V+ + S S D TIK+W +A+ K H D ++ V
Sbjct: 234 HNDAVSSLSLDVELGLLYSSSWDTTIKVWR-IADSKCLESIHAHDDAINSV 283
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 40.7 bits (91), Expect = 8e-04
Identities = 20/70 (28%), Positives = 33/70 (47%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECK 448
SGS D + LWD+ R H V + F +++VS S+DK +++W+ +
Sbjct: 123 SGSKDNDIILWDVVGESGLFRLRGHRDQVTDLVFLDGGKKLVSSSKDKFLRVWDLETQHC 182
Query: 449 YTIQDDGHSD 478
I HS+
Sbjct: 183 MQIVSGHHSE 192
Score = 39.9 bits (89), Expect = 0.001
Identities = 22/76 (28%), Positives = 36/76 (47%)
Frame = +2
Query: 272 GSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKY 451
G D ++R+WD G F H V ++ ++ + SGS+D I LW+ + E
Sbjct: 82 GYADGSIRIWDTEKGTCEVNFNSHKGAVTALRYNKVGSMLASGSKDNDIILWDVVGE-SG 140
Query: 452 TIQDDGHSDWVSCVRF 499
+ GH D V+ + F
Sbjct: 141 LFRLRGHRDQVTDLVF 156
Score = 37.1 bits (82), Expect = 0.010
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN-TLAECKYTI 457
D T++++ + + K H V+ + S D IV+GS+DK +K+W +C +I
Sbjct: 561 DSTVKVFYMDSLKFYLSLYGHKLPVMCIDISSDGELIVTGSQDKNLKIWGLDFGDCHKSI 620
Query: 458 QDDGHSDWVSCVRFSPN 508
H D V V+F N
Sbjct: 621 --FAHGDSVMGVKFVRN 635
Score = 31.5 bits (68), Expect = 0.51
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTL 436
+Y S D+ ++ WD + E H ++ +A S +V+GS D++++ W+
Sbjct: 637 HYLFSIGKDRLVKYWDADKFEHLLTLEGHHAEIWCLAISNRGDFLVTGSHDRSMRRWDRS 696
Query: 437 AE 442
E
Sbjct: 697 EE 698
Score = 30.7 bits (66), Expect = 0.90
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +3
Query: 72 HNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYGHSHFISDVV 242
H G VT + N K M+ S S+D +I+W + + + RL GH ++D+V
Sbjct: 105 HKGAVTALRYN-KVGSMLASGSKDNDIILWDVVGESGLF-----RLRGHRDQVTDLV 155
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 350 DVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSCVRFS 502
DVL+VA S D + I D T+K++ + K+ + GH V C+ S
Sbjct: 542 DVLAVAISPDAKHIAVALLDSTVKVF-YMDSLKFYLSLYGHKLPVMCIDIS 591
>At3g50390.1 68416.m05512 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to myosin heavy chain kinase B (gb:U90946)
[Dictyostelium discoideum]
Length = 469
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECK 448
SGSWDKT ++W ++ + H +D ++ S + + +GS D T+K+W + K
Sbjct: 228 SGSWDKTFKVWRVSDLRCVESVNAH-EDAVNAVVSGFDGLVFTGSADGTVKVWRREDQAK 286
Query: 449 YT 454
T
Sbjct: 287 DT 288
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 341 HTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSCV 493
H + +A S D R + SGS DKT K+W +++ + + H D V+ V
Sbjct: 210 HLDAISCLALSEDKRLLYSGSWDKTFKVWR-VSDLRCVESVNAHEDAVNAV 259
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECK 448
SGS D T+ +W++ G T H V V + I S S DKT+ +W T ++
Sbjct: 135 SGSLDNTVHIWNMRTGMCTTVLRGHLSLVKGVTWDPIGSFIASQSDDKTVIIWRT-SDWG 193
Query: 449 YTIQDDGH 472
+ DGH
Sbjct: 194 MAHRTDGH 201
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +2
Query: 302 DLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDW 481
D+ K HT DV+ + +S D+ + SGS D T+ +WN T+ GH
Sbjct: 104 DVENWKAVMTLRGHTADVVDLNWSPDDSMLASGSLDNTVHIWNMRTGMCTTVL-RGHLSL 162
Query: 482 VSCVRFSP 505
V V + P
Sbjct: 163 VKGVTWDP 170
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 63 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWK 164
LRGH V + +P I S S DKT+I+W+
Sbjct: 156 LRGHLSLVKGVTWDP-IGSFIASQSDDKTVIIWR 188
>At1g53090.2 68414.m06012 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +2
Query: 254 RNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAF-SVDNRQIVSGSRDKTIKLWN 430
++ S +++ +++WD+A + ++H K V S+ + S D + SGS D ++KLW+
Sbjct: 546 KSQVASSNFEGVVQVWDVARNQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWS 605
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 272 GSWDKTLRLWDLAAGKTTR-RFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
GS D + +DL K H K V V F VD+ +VS S D T+KLW+
Sbjct: 637 GSADHKVYYYDLRNPKLPLCTMIGHHKTVSYVRF-VDSSTLVSSSTDNTLKLWD 689
>At1g53090.1 68414.m06011 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400) (1 below
cutoff); similar to phytochrome A supressor spa1
(GI:4809171) [Arabidopsis thaliana]
Length = 794
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +2
Query: 254 RNYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAF-SVDNRQIVSGSRDKTIKLWN 430
++ S +++ +++WD+A + ++H K V S+ + S D + SGS D ++KLW+
Sbjct: 546 KSQVASSNFEGVVQVWDVARNQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWS 605
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 272 GSWDKTLRLWDLAAGKTTR-RFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
GS D + +DL K H K V V F VD+ +VS S D T+KLW+
Sbjct: 637 GSADHKVYYYDLRNPKLPLCTMIGHHKTVSYVRF-VDSSTLVSSSTDNTLKLWD 689
>At4g03020.1 68417.m00410 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to L. erythrorhizon LEC14B, GenBank accession
number Q40153
Length = 493
Score = 39.9 bits (89), Expect = 0.001
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDN-RQIVSGSRDKTIKLWN 430
++GS D ++ ++DL A + + R HT DV +V F+ ++ I+SGS D K+W+
Sbjct: 245 VAGSSDDSIYVYDLEANRVSLRTVAHTSDVNTVCFADESGNLILSGSDDNLCKVWD 300
Score = 36.3 bits (80), Expect = 0.018
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWD----LAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKL 424
N LSGS D ++WD + K H + V + D R +S +D+TIKL
Sbjct: 285 NLILSGSDDNLCKVWDRRCFIGRDKPAGVLVGHLEGVTFIDSRGDGRYFISNGKDQTIKL 344
Query: 425 WN 430
W+
Sbjct: 345 WD 346
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 39.5 bits (88), Expect = 0.002
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Frame = +2
Query: 323 TRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQD---DGHSDWVSCV 493
+R ++ H K V SVA++ + ++ SGS D+T ++WN +D GH+D V +
Sbjct: 13 SREYQGHKKKVHSVAWNSNGTKLASGSVDQTARIWNIEPHGHSKAKDLELKGHTDSVDQL 72
Query: 494 RFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHLGHSGYLNTVTVSPDGSLCASG 661
+ P + L+ G + R + + K + SG +T PDG+ A G
Sbjct: 73 CWDPK-HSDLVATASGDKSVRLWDARSGKC-TQQVELSGENINITYKPDGTHVAVG 126
Score = 35.9 bits (79), Expect = 0.024
Identities = 15/52 (28%), Positives = 31/52 (59%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKL 424
+ S DK++RLWD +GK T++ E +++ ++ + D + G+RD + +
Sbjct: 84 TASGDKSVRLWDARSGKCTQQVELSGENI-NITYKPDGTHVAVGNRDDELTI 134
Score = 33.9 bits (74), Expect = 0.096
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +3
Query: 63 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVW 161
L+GH V Q+ +PK+ D++ ++S DK++ +W
Sbjct: 62 LKGHTDSVDQLCWDPKHSDLVATASGDKSVRLW 94
Score = 30.7 bits (66), Expect = 0.90
Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTR----RFEDHTKDVLSVAFSVDNRQIV-SGSRDKTIKLWNT 433
SGS D+T R+W++ ++ + HT V + + + +V + S DK+++LW+
Sbjct: 37 SGSVDQTARIWNIEPHGHSKAKDLELKGHTDSVDQLCWDPKHSDLVATASGDKSVRLWDA 96
Query: 434 LA-ECKYTIQDDGHS 475
+ +C ++ G +
Sbjct: 97 RSGKCTQQVELSGEN 111
>At3g51930.1 68416.m05696 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
myosin heavy chain kinase B (SP:P90648)(GI:1903458)
[Dictyostelium discoideum]
Length = 415
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW 427
SGSWDKTL++W L+ K + H D ++ + D R + S S D +K+W
Sbjct: 189 SGSWDKTLKVWRLSDLKCLESIKAH-DDAINGLVAGDGR-VYSASADGKVKIW 239
Score = 34.3 bits (75), Expect = 0.073
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +2
Query: 332 FEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN---TLAECKYTIQDDGHSDWVSCVRFS 502
FE ++ + V + SGS DK+I LW T CK+ + GH V C++ S
Sbjct: 312 FETRGHNMAVLCMCVVGEMVCSGSADKSIGLWRREVTGMLCKFGV-IHGHEGPVKCLQAS 370
Query: 503 PN 508
PN
Sbjct: 371 PN 372
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 454 HPR*WTQRL-GVMCQILTQYANPIIVSCGWDRTVKVWHLTKL 576
H R W + + C L +A II S WD+T+KVW L+ L
Sbjct: 166 HKRLWIEHADSISC--LAVHAG-IIYSGSWDKTLKVWRLSDL 204
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQ-IVSGSRDKTIKLWN 430
L+ S D+T+++WD+ K T HT V S+ N +VSGSRD LW+
Sbjct: 144 LTASGDQTIKVWDVEENKCTGVLIGHTGTVKSMCSHPTNSDLLVSGSRDGCFALWD 199
Score = 35.9 bits (79), Expect = 0.024
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 39 ETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKL 167
E K G L GH G V + ++P D+++S SRD +W L
Sbjct: 158 EENKCTGVLIGHTGTVKSMCSHPTNSDLLVSGSRDGCFALWDL 200
>At5g58230.1 68418.m07290 WD-40 repeat protein (MSI1) contains 6
WD-40 repeats (PF0400); identical to WD-40 repeat
protein (SP:O22467) [Arabidopsis thaliana]
Length = 424
Score = 39.1 bits (87), Expect = 0.003
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Frame = +2
Query: 281 DKTLRLWDL---AAGKTTRRFEDHTKDVLSVAFSVDNRQIVS-GSRDKTIKLWN--TLAE 442
D+ L +WDL +A K + H+ +V +AF+ N +V+ GS DKT+KL++ L+
Sbjct: 249 DQYLLIWDLRSPSASKPVQSVVAHSMEVNCLAFNPFNEWVVATGSTDKTVKLFDLRKLST 308
Query: 443 CKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTEL 550
+T D H + V V ++P T L +G L
Sbjct: 309 ALHTF--DSHKEEVFQVGWNPKNETILASCCLGRRL 342
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 60 TLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTR 173
T H V Q+ NPK ++ S + L+VW L+R
Sbjct: 312 TFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSR 349
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/63 (30%), Positives = 38/63 (60%)
Frame = +2
Query: 317 KTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSCVR 496
K F H+ D+L +++S +NR ++S S D +++LW C+ + H+++V+ V+
Sbjct: 347 KPLHEFLGHSGDILDISWSKNNR-LLSASVDNSVRLWQ--IGCEDCLGIFSHNNYVTSVQ 403
Query: 497 FSP 505
F+P
Sbjct: 404 FNP 406
Score = 38.7 bits (86), Expect = 0.003
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS-VDNRQIVSGSRDKTIKLWNT 433
N LS S D ++RLW + F H V SV F+ VD+ +SGS D +++W+
Sbjct: 368 NRLLSASVDNSVRLWQIGCEDCLGIFS-HNNYVTSVQFNPVDDDHFISGSIDGKVRIWSA 426
Query: 434 LAECKYTIQDDGHSDWVSCVRFSPN 508
++C+ D V+ V + P+
Sbjct: 427 -SQCQVVDWADARG-IVTAVCYQPD 449
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 72 HNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTR 173
HN +VT + NP D +S S D + +W ++
Sbjct: 395 HNNYVTSVQFNPVDDDHFISGSIDGKVRIWSASQ 428
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/63 (30%), Positives = 38/63 (60%)
Frame = +2
Query: 317 KTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSCVR 496
K F H+ D+L +++S +NR ++S S D +++LW C+ + H+++V+ V+
Sbjct: 347 KPLHEFLGHSGDILDISWSKNNR-LLSASVDNSVRLWQ--IGCEDCLGIFSHNNYVTSVQ 403
Query: 497 FSP 505
F+P
Sbjct: 404 FNP 406
Score = 38.7 bits (86), Expect = 0.003
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS-VDNRQIVSGSRDKTIKLWNT 433
N LS S D ++RLW + F H V SV F+ VD+ +SGS D +++W+
Sbjct: 368 NRLLSASVDNSVRLWQIGCEDCLGIFS-HNNYVTSVQFNPVDDDHFISGSIDGKVRIWSA 426
Query: 434 LAECKYTIQDDGHSDWVSCVRFSPN 508
++C+ D V+ V + P+
Sbjct: 427 -SQCQVVDWADARG-IVTAVCYQPD 449
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 72 HNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTR 173
HN +VT + NP D +S S D + +W ++
Sbjct: 395 HNNYVTSVQFNPVDDDHFISGSIDGKVRIWSASQ 428
>At2g47790.1 68415.m05965 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; The first 3 exons are
identical to that of GB:AJ224957. This gene appears to
be a truncated version of that in GB:AJ224957; contains
4 WD-40 repeats (PF00400)
Length = 392
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFED-HTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAEC 445
S S D T+R WD + + R + + +++ S ++ +++G + + LW+
Sbjct: 104 SCSSDGTIRSWDTRSFQQVSRIDTGNDQEIFSFSYGGAADNLLAGGCKEQVLLWDWRNSK 163
Query: 446 KYTIQDDGHSDWVSCVRFSPNMPTPLL 526
+ ++ H D V+ V F PN P LL
Sbjct: 164 QVACLEESHMDDVTQVHFVPNKPNKLL 190
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Frame = +2
Query: 260 YALSGSWDKTLRLWD--LAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT 433
+ +SGS D +++WD L + + HT V ++ S D +IVSGS D ++ +W+
Sbjct: 869 FFISGSTDCLVKIWDPSLRGSELRATLKGHTGTVRAI--SSDRGKIVSGSDDLSVIVWDK 926
Query: 434 LAECKYTIQDDGHSDWVSCVR 496
+ + GH VSCV+
Sbjct: 927 -QTTQLLEELKGHDSQVSCVK 946
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN-TLAECKYTI 457
D +WD+ +GK + + HTK + S+ D +++GS D T ++W+ + C +
Sbjct: 1001 DTVANIWDIRSGKQMHKLKGHTKWIRSIRMVEDT--LITGSDDWTARVWSVSRGSCDAVL 1058
Query: 458 QDDGHSDWVSCVRFSP 505
H+ V V +SP
Sbjct: 1059 A--CHAGPVQSVEYSP 1072
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +3
Query: 48 KLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVW 161
+LR TL+GH G V I+++ I+S S D ++IVW
Sbjct: 890 ELRATLKGHTGTVRAISSD---RGKIVSGSDDLSVIVW 924
>At1g24530.1 68414.m03088 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 7 WD-40 repeats (PF00400)
Length = 418
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW 427
+ S SWDKTL++W + + + H V ++A S N + +GS D+ I++W
Sbjct: 207 FIYSVSWDKTLKIWRASDLRCKESIKAHDDAVNAIAVST-NGTVYTGSADRRIRVW 261
Score = 32.7 bits (71), Expect = 0.22
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Frame = +2
Query: 269 SGSWDKTLRLW---DLAAGKTTR-RFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTL 436
SGS D+++ +W D + R H K +LS+ F+V + ++SGS D+T+++W
Sbjct: 297 SGSCDRSILVWEREDTSNYMAVRGALRGHDKAILSL-FNVSDL-LLSGSADRTVRIWRRG 354
Query: 437 AECKYTIQD--DGHS 475
+ Y+ + GH+
Sbjct: 355 PDSSYSCLEVLSGHT 369
Score = 31.9 bits (69), Expect = 0.39
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFE---DHTKDVLSVAFSVDNR-----QIVSGSRDKTIK 421
LSGS D+T+R+W + E HTK V S+A + I+SGS D +K
Sbjct: 340 LSGSADRTVRIWRRGPDSSYSCLEVLSGHTKPVKSLAAVREKELDDVVSIISGSLDGEVK 399
Query: 422 LW 427
W
Sbjct: 400 CW 401
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRF----EDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW 427
+GS D+ +R+W G+ E H V ++A + D + SGS D++I +W
Sbjct: 251 TGSADRRIRVWAKPTGEKRHTLVATLEKHKSAVNALALNDDGSVLFSGSCDRSILVW 307
Score = 31.5 bits (68), Expect = 0.51
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 36 SETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDEN 182
S + +RG LRGH+ + + D++LS S D+T+ +W+ D +
Sbjct: 313 SNYMAVRGALRGHDKAILSLFN---VSDLLLSGSADRTVRIWRRGPDSS 358
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 365 AFSVDNRQIVSGSRDKTIKLWNTL-AECKYTIQDDGHSDWVSCVRFSPN 508
A +V + I S S DKT+K+W CK +I+ H D V+ + S N
Sbjct: 200 ALAVSDGFIYSVSWDKTLKIWRASDLRCKESIK--AHDDAVNAIAVSTN 246
>At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4
protein (ZFWD4) contains 6 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd4 protein (GI:12057170)
[Arabidopsis thaliana]
Length = 419
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/53 (37%), Positives = 31/53 (58%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW 427
SGS DKT+++WDL + + HT V S+ ++ ++S S D TIK+W
Sbjct: 273 SGSVDKTIKMWDLNTLQCIMTLKQHTGTVTSLL--CWDKCLISSSLDGTIKVW 323
Score = 32.7 bits (71), Expect = 0.22
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +2
Query: 335 EDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW--NTLAECKYTIQ 460
E H+ +V F+V + + SGS DKTIK+W NTL +C T++
Sbjct: 255 EGHSGEV--TCFAVGGQMLYSGSVDKTIKMWDLNTL-QCIMTLK 295
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 36 SETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKL 167
S+ K +L GH+G VT A + M+ S S DKT+ +W L
Sbjct: 245 SDPFKYLTSLEGHSGEVTCFAVGGQ---MLYSGSVDKTIKMWDL 285
>At5g60940.2 68418.m07645 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 337
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFED-HTK-DVLSVAFSVDNRQIVSGSRDKTIKLW 427
++ S D +RL+D + K R + H K +V S F+ D R ++S +D T+KLW
Sbjct: 190 ITASKDGAIRLFDGVSAKCVRSIGNAHGKSEVTSAVFTKDQRFVLSSGKDSTVKLW 245
>At5g60940.1 68418.m07644 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 429
Score = 38.3 bits (85), Expect = 0.004
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFED-HTK-DVLSVAFSVDNRQIVSGSRDKTIKLW 427
++ S D +RL+D + K R + H K +V S F+ D R ++S +D T+KLW
Sbjct: 282 ITASKDGAIRLFDGVSAKCVRSIGNAHGKSEVTSAVFTKDQRFVLSSGKDSTVKLW 337
>At4g22910.1 68417.m03309 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to fizzy-related
protein (GI:5813825) Drosophila melanogaster,
PID:g2326419;
Length = 518
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKT-TRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAEC 445
SGS DK++ D+ + + H +V + +S DNR++ SG D + +WN
Sbjct: 309 SGSRDKSILQRDIRCQEDHVSKLAGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQ-HST 367
Query: 446 KYTIQDDGHSDWVSCVRFSPNM 511
+ ++ H+ V + +SP++
Sbjct: 368 QPVLKYSEHTAAVKAIAWSPHV 389
Score = 34.3 bits (75), Expect = 0.073
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 341 HTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECK 448
HT VL +A S D + IV+G+ D+T++ WN K
Sbjct: 464 HTYRVLYLAVSPDGQTIVTGAGDETLRFWNVFPSPK 499
Score = 30.7 bits (66), Expect = 0.90
Identities = 20/71 (28%), Positives = 37/71 (52%)
Frame = +2
Query: 290 LRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDG 469
+++WD + K TR E H V ++A+ + + SGSRDK+I + + + + G
Sbjct: 276 VQIWDASRCKRTRTMEGHRLRVGALAWG--SSVLSSGSRDKSILQRDIRCQEDHVSKLAG 333
Query: 470 HSDWVSCVRFS 502
H V +++S
Sbjct: 334 HKSEVCGLKWS 344
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 38.3 bits (85), Expect = 0.004
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Frame = +2
Query: 296 LWDLAAGKTTRRFEDHTKDVLSVAFSVDNR-QIVSGSRDKTIKLWNTLAECKYTIQDDGH 472
+WD +G F+ H++ VLS A +IV+ D + + K+ + H
Sbjct: 130 MWD--SGSNVGEFDGHSRRVLSCAIKPTRPFRIVTCGEDFLVNFYEG-PPFKFKLSSREH 186
Query: 473 SDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKI-NHLGHSGYLNTVTVSPDG 643
S++V+CVRF+P+ + + G + ++ + GH G + V+ SPDG
Sbjct: 187 SNFVNCVRFAPDGSKFITVSSDKKGIIYDGKTCEILGELSSDDGHKGSIYAVSWSPDG 244
Score = 32.3 bits (70), Expect = 0.29
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Frame = +2
Query: 353 VLSVAFSVDNRQIVSGSRDKTIKLWNTLAEC-KYTIQDDGHSDWVSCVRFSPNMPTPLLY 529
V ++A + D + V G +D + L++ + + H +S +R+SP++
Sbjct: 450 VTALAVTPDGTEAVIGGQDGKLHLYSINGDSLTEEAVLERHRGAISVIRYSPDLSMFASA 509
Query: 530 PVVGTELSRSGISLNCKLKINHLGHSGYLNTVTVSPDGSLCASG 661
+ + +S KLK N L HS +N + SP+ ++ A+G
Sbjct: 510 DLNREAVVWDRVSREMKLK-NMLYHSARINCLAWSPNSTMVATG 552
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = +2
Query: 335 EDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
+ H + +V++S D +Q+++ S DK+ K+W+
Sbjct: 229 DGHKGSIYAVSWSPDGKQVLTVSADKSAKIWD 260
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 37.9 bits (84), Expect = 0.006
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAG---KTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
Y S S D+T +W+++A H K V+++ +S D+RQ+++ ++ I+ W+
Sbjct: 288 YLASSSKDQTAIIWEISADGHISLKHTLVGHHKPVIAILWSPDDRQVLTCGAEEVIRRWD 347
Query: 431 T-LAECKYTIQDDGHSDWVSC 490
+C + + G S +SC
Sbjct: 348 VDSGDCVHMYEKGGISP-ISC 367
Score = 34.7 bits (76), Expect = 0.055
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +2
Query: 317 KTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDD--GHSDWVSC 490
+T + E HT +V + FS + + + S S+D+T +W A+ +++ GH V
Sbjct: 265 QTAQILESHTDEVWFLQFSHNGKYLASSSKDQTAIIWEISADGHISLKHTLVGHHKPVIA 324
Query: 491 VRFSPN 508
+ +SP+
Sbjct: 325 ILWSPD 330
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDN-RQIVSGSRDKTIKLW 427
+ SGS D + +W + GK H V V++S N + S S D TI++W
Sbjct: 503 FIASGSEDSQVYIWHRSTGKLIVELPGHAGAVNCVSWSPTNLHMLASASDDGTIRIW 559
Score = 32.3 bits (70), Expect = 0.29
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQ 460
D + L+D A T R + + S + S DN+ I+ ++ I+LWN + K +
Sbjct: 424 DSVISLFDREA--TVERLIEEEDMITSFSLSNDNKYILVNLLNQEIRLWNIEGDPKIVSR 481
Query: 461 DDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGI--SLNCKLKINHLGHSGYLNTVTVS 634
GH +R S + G+E S+ I KL + GH+G +N V+ S
Sbjct: 482 YKGHKRSRFIIR-SCFGGYKQAFIASGSEDSQVYIWHRSTGKLIVELPGHAGAVNCVSWS 540
Query: 635 P 637
P
Sbjct: 541 P 541
Score = 31.1 bits (67), Expect = 0.68
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 81 WVTQIATNPKYPDMILSSSRDKTLIVWKLTRD 176
W Q + N KY + SSS+D+T I+W+++ D
Sbjct: 278 WFLQFSHNGKY---LASSSKDQTAIIWEISAD 306
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +3
Query: 42 TLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTR 173
T KL L GH G V ++ +P M+ S+S D T+ +W L R
Sbjct: 520 TGKLIVELPGHAGAVNCVSWSPTNLHMLASASDDGTIRIWGLDR 563
>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
contains Pfam PF02138: Beige/BEACH domain; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies)
Length = 2946
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +2
Query: 272 GSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW 427
G D +++L KT H V +A S DN +V+GSRD T+ LW
Sbjct: 2644 GHADNSIKLVSSDGAKTLETAFGHCAPVTCLALSPDNNFLVTGSRDSTVLLW 2695
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +3
Query: 36 SETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKL 167
S+ K T GH VT +A +P + +++ SRD T+++W++
Sbjct: 2655 SDGAKTLETAFGHCAPVTCLALSPDN-NFLVTGSRDSTVLLWRI 2697
>At1g80710.1 68414.m09470 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to damage-specific DNA-binding protein 2 (DDB2)
[Mus musculus]
Length = 516
Score = 37.9 bits (84), Expect = 0.006
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = +2
Query: 296 LWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV-SGSRDKTIKLWNTL---AECKYTIQD 463
+WDL AGK+ +E H + + S+ F+ N ++ + S D T LW+ A+ T+
Sbjct: 332 VWDLRAGKSVFHWELHERRINSIDFNPQNPHVMATSSTDGTACLWDLRSMGAKKPKTLST 391
Query: 464 DGHSDWVSCVRFSPN 508
HS V FSP+
Sbjct: 392 VNHSRAVHSAYFSPS 406
>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
family protein similar to Transcriptional repressor
rco-1 (SP:P78706) [Neurospora crassa]; similar to
TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
Length = 648
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Frame = +2
Query: 272 GSWDKTLRLWDLAAGKTTRRF----EDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
G D ++++W L G +R + HT D+ SV FS D R ++S S D ++K+W+
Sbjct: 345 GVGDGSIQIWSLKPGWGSRPDIYVGKAHTDDITSVKFSSDGRILLSRSFDGSLKVWD 401
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 37.1 bits (82), Expect = 0.010
Identities = 19/57 (33%), Positives = 33/57 (57%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW 427
N SGS DKT+++W L + + DH+ V+S+ ++ ++S S D T+K+W
Sbjct: 285 NRLYSGSMDKTIKVWSLDNLQCIQTLTDHSSVVMSLI--CWDQFLLSCSLDNTVKIW 339
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTT 325
+GS D+TLR+WD A+G+ T
Sbjct: 168 TGSKDETLRVWDCASGQCT 186
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 39 ETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVW 161
E+ L L GH V+ IA P D + + S+D+TL VW
Sbjct: 139 ESFALLTQLDGHEKLVSGIAL-PSGSDKLYTGSKDETLRVW 178
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 362 VAFSVDNRQIVSGSRDKTIKLWN-TLAECKYTIQD 463
V V ++ SGS DKTIK+W+ +C T+ D
Sbjct: 278 VTLYVGANRLYSGSMDKTIKVWSLDNLQCIQTLTD 312
Score = 27.5 bits (58), Expect = 8.4
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = +2
Query: 329 RFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
+ + H K V +A + ++ +GS+D+T+++W+
Sbjct: 146 QLDGHEKLVSGIALPSGSDKLYTGSKDETLRVWD 179
>At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3
protein (ZFWD3) contains 5 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd3 protein (GP:12057168)
{Arabidopsis thaliana}
Length = 472
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW 427
SGS DKT+++WDL + + H V S+ ++ ++S S D TIKLW
Sbjct: 327 SGSVDKTIKVWDLNTLQCRMTLKQHIGTVTSLL--CWDKCLISSSLDGTIKLW 377
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +2
Query: 368 FSVDNRQIVSGSRDKTIKLW--NTLAECKYTIQ 460
F V + SGS DKTIK+W NTL +C+ T++
Sbjct: 318 FVVGGEVLYSGSVDKTIKVWDLNTL-QCRMTLK 349
>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota,PID:g2253631
Length = 457
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTR--RFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYT 454
D T+ LWD + G T+ ++ V S+ ++ D R + G + ++LW++ + +
Sbjct: 159 DHTVYLWDASTGSTSELVTIDEEKGPVTSINWAPDGRHVAVGLNNSEVQLWDSASNRQLR 218
Query: 455 IQDDGHSDWVSCVRFSPNMPT 517
GH V + ++ ++ T
Sbjct: 219 TLKGGHQSRVGSLAWNNHILT 239
Score = 35.5 bits (78), Expect = 0.032
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 10/140 (7%)
Frame = +2
Query: 269 SGSWDKTLRLWD---LAAGKTTR---RFEDHTKDVLSVAFSVDNRQIVS---GSRDKTIK 421
SG D + +WD ++ TT+ R E+HT V ++A+ +++ G D+TIK
Sbjct: 283 SGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAWCPFQANLLATGGGGGDRTIK 342
Query: 422 LWNTLAECKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHL- 598
WNT D G V + +S N LL T+ + +K+ L
Sbjct: 343 FWNTHTGACLNSVDTGSQ--VCSLLWSKN-ERELLSSHGFTQNQLTLWKYPSMVKMAELT 399
Query: 599 GHSGYLNTVTVSPDGSLCAS 658
GH+ + + SPDG AS
Sbjct: 400 GHTSRVLYMAQSPDGCTVAS 419
Score = 31.9 bits (69), Expect = 0.39
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +2
Query: 272 GSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
G L LW + HT VL +A S D + S + D+T++ WN
Sbjct: 378 GFTQNQLTLWKYPSMVKMAELTGHTSRVLYMAQSPDGCTVASAAGDETLRFWN 430
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 332 FEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN-TLAECKYTIQ 460
+ HT++V + +S +Q+ SG D + +W+ ++A T Q
Sbjct: 262 YRGHTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQ 305
>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); WD-repeat protein -Daucus
carota, PID:g2253631
Length = 447
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTR--RFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYT 454
D T+ LWD + G T+ ++ V S+ ++ D R + G + ++LW++ + +
Sbjct: 149 DHTVYLWDASTGSTSELVTIDEEKGPVTSINWAPDGRHVAVGLNNSEVQLWDSASNRQLR 208
Query: 455 IQDDGHSDWVSCVRFSPNMPT 517
GH V + ++ ++ T
Sbjct: 209 TLKGGHQSRVGSLAWNNHILT 229
Score = 35.5 bits (78), Expect = 0.032
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 10/140 (7%)
Frame = +2
Query: 269 SGSWDKTLRLWD---LAAGKTTR---RFEDHTKDVLSVAFSVDNRQIVS---GSRDKTIK 421
SG D + +WD ++ TT+ R E+HT V ++A+ +++ G D+TIK
Sbjct: 273 SGGNDNVVHIWDRSVASSNSTTQWLHRLEEHTSAVKALAWCPFQANLLATGGGGGDRTIK 332
Query: 422 LWNTLAECKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHL- 598
WNT D G V + +S N LL T+ + +K+ L
Sbjct: 333 FWNTHTGACLNSVDTGSQ--VCSLLWSKN-ERELLSSHGFTQNQLTLWKYPSMVKMAELT 389
Query: 599 GHSGYLNTVTVSPDGSLCAS 658
GH+ + + SPDG AS
Sbjct: 390 GHTSRVLYMAQSPDGCTVAS 409
Score = 31.9 bits (69), Expect = 0.39
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +2
Query: 272 GSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
G L LW + HT VL +A S D + S + D+T++ WN
Sbjct: 368 GFTQNQLTLWKYPSMVKMAELTGHTSRVLYMAQSPDGCTVASAAGDETLRFWN 420
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 332 FEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN-TLAECKYTIQ 460
+ HT++V + +S +Q+ SG D + +W+ ++A T Q
Sbjct: 252 YRGHTQEVCGLKWSGSGQQLASGGNDNVVHIWDRSVASSNSTTQ 295
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT 433
N ++G D +RL+D GK + H V V F+ SGS D TI++W T
Sbjct: 241 NKFVAGGEDMWVRLFDFHTGKEIGCNKGHHGPVHCVRFAPTGESYASGSEDGTIRIWQT 299
Score = 32.3 bits (70), Expect = 0.29
Identities = 35/132 (26%), Positives = 50/132 (37%), Gaps = 8/132 (6%)
Frame = +2
Query: 290 LRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDG 469
+RLWD+ +GK + E + V S S D R I + T+K W D
Sbjct: 170 VRLWDVRSGKIVQTLETKS-PVTSAEVSQDGRYITTAD-GSTVKFW-----------DAN 216
Query: 470 HSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHL--------GHSGYLNTV 625
H V N+ + L P G + G + +L H GH G ++ V
Sbjct: 217 HFGLVKSYDMPCNIESASLEPKSGNKFVAGGEDMWVRLFDFHTGKEIGCNKGHHGPVHCV 276
Query: 626 TVSPDGSLCASG 661
+P G ASG
Sbjct: 277 RFAPTGESYASG 288
>At1g24130.1 68414.m03044 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats
(PF00400);similar to beta transducin-like protein
HET-D2Y (GI:17225210) [Podospora anserina].
Length = 415
Score = 37.1 bits (82), Expect = 0.010
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
S SWD++ ++W + K E D ++ + + +GS DK IK+WN
Sbjct: 209 SASWDRSFKIWRTSDFKCLDSIEKAHDDAINAIVVSKDGFVYTGSADKKIKVWN 262
Score = 35.1 bits (77), Expect = 0.042
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 13/68 (19%)
Frame = +2
Query: 266 LSGSWDKTLRLW-----DLAAGKTTRRFEDHTKDVLSVAFSVDNR--------QIVSGSR 406
LSGS DK+LR+W + E HTK V S+A SV + + SGS
Sbjct: 342 LSGSADKSLRVWRRGLMEKEGYSCLAVLEGHTKPVKSLAVSVSDSDSNSDYSCMVYSGSL 401
Query: 407 DKTIKLWN 430
D ++K+WN
Sbjct: 402 DLSLKVWN 409
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 57 GTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWK 164
G LRGH + +A D++LS S DK+L VW+
Sbjct: 322 GALRGHRKAIMCLAVAS---DLVLSGSADKSLRVWR 354
>At4g11920.1 68417.m01895 WD-40 repeat family protein contains 6 WD
repeats (PF00400); similar to Fzr1 (GI:6463679) {Homo
sapiens}; similar to WD repeat protein Srw1
-Schizosaccharomyces pombe,PID:d1023012
Length = 475
Score = 36.7 bits (81), Expect = 0.014
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKT-TRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAEC 445
SGS DK++ D+ + + + H ++ + +S DNR++ SG D + +WN
Sbjct: 266 SGSRDKSILQRDIRTQEDHVSKLKGHKSEICGLKWSSDNRELASGGNDNKLFVWNQ-HST 324
Query: 446 KYTIQDDGHSDWVSCVRFSPN 508
+ ++ H+ V + +SP+
Sbjct: 325 QPVLRFCEHAAAVKAIAWSPH 345
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/77 (27%), Positives = 40/77 (51%)
Frame = +2
Query: 272 GSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKY 451
G+ T+++WD+ K R E H V ++A+S + + SGSRDK+I + + +
Sbjct: 227 GTSSGTVQIWDVLRCKNIRTMEGHRLRVGALAWS--SSVLSSGSRDKSILQRDIRTQEDH 284
Query: 452 TIQDDGHSDWVSCVRFS 502
+ GH + +++S
Sbjct: 285 VSKLKGHKSEICGLKWS 301
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 341 HTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECK 448
H+ VL +A S D + IV+G+ D+T++ WN K
Sbjct: 421 HSYRVLYLAVSPDGQTIVTGAGDETLRFWNVFPSPK 456
>At2g16405.1 68415.m01878 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD-repeat protein 13 (SP:Q9H1Z4) [Homo
sapiens]
Length = 482
Score = 36.7 bits (81), Expect = 0.014
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 326 RRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN-TLAECKYTIQDDGHSDWVSCVRFS 502
++ H+KDV FS +N+ I S S DKTI++W + C I G S C+RF
Sbjct: 210 KQLTGHSKDVTDFDFSSNNQYIASSSLDKTIRVWELSRGVCIRVIY--GISPQY-CIRFH 266
Query: 503 P 505
P
Sbjct: 267 P 267
Score = 31.5 bits (68), Expect = 0.51
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
Y S S DKT+R+W+L+ G R + V+N + +G+ +K + ++N
Sbjct: 230 YIASSSLDKTIRVWELSRGVCIRVIYGISPQYCIRFHPVNNNFLSAGNANKELTVFN 286
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +3
Query: 63 LRGHNGWVTQI--ATNPKYPDMILSSSRDKTLIVWKLTR 173
L GH+ VT ++N +Y I SSS DKT+ VW+L+R
Sbjct: 212 LTGHSKDVTDFDFSSNNQY---IASSSLDKTIRVWELSR 247
>At1g80670.1 68414.m09466 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400) (1
weak); similar to Hypothetical RAE1-like
protein.(SP:Q38942) [Arabidopsis thaliana]; similar to
mRNA-associated protein mrnp 41 ((mRNA export protein)
(GB:AAC28126) (GI:1903456)(RAE1) (MRNP41) (SP:P78406)
[Homo sapiens]
Length = 349
Score = 36.7 bits (81), Expect = 0.014
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT 433
SG DK ++W L +G H + ++A+ + +GS DKT+K W+T
Sbjct: 89 SGGCDKQAKMWPLLSGGQPVTVAMHEGPIAAMAWIPGMNLLATGSWDKTLKYWDT 143
Score = 33.1 bits (72), Expect = 0.17
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Frame = +2
Query: 275 SWDKTLRLWDL-----AAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
SWD +R W++ + + H + VL A+ D + SG DK K+W L+
Sbjct: 44 SWDNQVRCWEISRSGASLASAPKASISHDQPVLCSAWKDDGTTVFSGGCDKQAKMWPLLS 103
Score = 32.7 bits (71), Expect = 0.22
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAF--SVDNRQIVSGSRDKTIKLWN 430
N +GSWDKTL+ WD T ++ HT+ + + SV + +V G+ D+ + ++N
Sbjct: 127 NLLATGSWDKTLKYWD-----TRQQNPVHTQQLPDKCYTLSVKHPLMVVGTADRNLIVFN 181
>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to pre-mRNA splicing
factor PRP17 (SP:O60508) [Homo sapiens]
Length = 457
Score = 36.3 bits (80), Expect = 0.018
Identities = 37/148 (25%), Positives = 57/148 (38%), Gaps = 13/148 (8%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGS-------RDKT 415
N LSG +LRLWD+ A K + +L V F +Q +S S +
Sbjct: 260 NVFLSGGSKGSLRLWDIRANKFVHEYVRDLGPILDVEFIAGGKQFISSSDVSGRNISENA 319
Query: 416 IKLWNTLAECKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINH 595
+ +W+ E + Q + C++ P P ++ + S N K+N
Sbjct: 320 VIVWDISREVPLSNQVYVEAYTCPCIKRHPQDP---VFIAQSHGNYTAIFSTNPPFKLNK 376
Query: 596 L----GH--SGYLNTVTVSPDGSLCASG 661
GH +G+ SPDG ASG
Sbjct: 377 YKRFEGHWVAGFPIKCNFSPDGETLASG 404
>At5g64630.3 68418.m08123 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 428
Score = 35.9 bits (79), Expect = 0.024
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Frame = +2
Query: 254 RNYALSGSWDKTLRLWDLAAGKTTRRFEDHT------KDVLSVAFSVDNRQIVSGSRDKT 415
R SG+ L +W L +T + ++ H KDVL + +S D+ ++SGS D +
Sbjct: 17 RELLASGADGGELFIWKLHPSETNQSWKVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNS 76
Query: 416 IKLWNTLAECKYTIQDDGHSDWVSCVRFSP 505
+W+ + I D H +V V + P
Sbjct: 77 CIIWDVNKGSVHQIL-DAHCHYVQGVAWDP 105
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
Y +SGS D + +WD+ G + + H V VA+ + + S S D+T +++
Sbjct: 67 YLISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAWDPLAKYVASLSSDRTCRIYANKP 126
Query: 440 ECK 448
+ K
Sbjct: 127 QTK 129
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 35.9 bits (79), Expect = 0.024
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +2
Query: 272 GSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAE 442
G L LW + HT VL +A S D + S + D+T++LWN E
Sbjct: 348 GFTQNQLTLWKYPSMVKMAELNGHTSRVLFMAQSPDGCTVASAAGDETLRLWNVFGE 404
Score = 28.7 bits (61), Expect = 3.6
Identities = 22/127 (17%), Positives = 56/127 (44%), Gaps = 2/127 (1%)
Frame = +2
Query: 287 TLRLWDLAAGKTTR--RFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQ 460
T+ LWD ++ T++ +D V S+ ++ D + G + +++W+ ++
Sbjct: 131 TVYLWDASSCYTSKLVTIDDENGPVTSINWTQDGLDLAVGLDNSEVQVWDCVSNRHVRTL 190
Query: 461 DDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHLGHSGYLNTVTVSPD 640
GH V + ++ ++ L + ++ + + + + ++GH+ + + S
Sbjct: 191 RGGHESRVGSLAWNNHI---LTTGGMDGKIVNNDVRIRSSIIGTYVGHTEEVCGLKWSES 247
Query: 641 GSLCASG 661
G ASG
Sbjct: 248 GKKLASG 254
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 341 HTKDVLSVAFSVDNRQIVSGSRDKTIKLWN-TLAECKYTIQ 460
HT++V + +S +++ SG D + +W+ +LA T Q
Sbjct: 235 HTEEVCGLKWSESGKKLASGGNDNVVHIWDRSLASSNPTRQ 275
>At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; similar to "Will die slowly" protein,
Drosophia; putative cdc20 protein - Arabidopsis
thaliana, EMBL:AF029262
Length = 411
Score = 35.9 bits (79), Expect = 0.024
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +2
Query: 272 GSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAE 442
G L LW + HT VL +A S D + S + D+T++LWN E
Sbjct: 331 GFTQNQLTLWKYPSMVKMAELNGHTSRVLFMAQSPDGCTVASAAGDETLRLWNVFGE 387
Score = 33.9 bits (74), Expect = 0.096
Identities = 24/127 (18%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
Frame = +2
Query: 287 TLRLWDLAAGKTTR--RFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQ 460
T+ LWD ++G T + ++ V S+ ++ D + G + ++LW+ ++ +
Sbjct: 113 TVYLWDASSGSTYKLVTIDEEEGPVTSINWTQDGLDLAIGLDNSEVQLWDCVSNRQVRTL 172
Query: 461 DDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHLGHSGYLNTVTVSPD 640
GH V + ++ ++ L + ++ + + + + +LGH+ + + S
Sbjct: 173 RGGHESRVGSLAWNNHI---LTTGGMDGKIVNNDVRIRSSIVETYLGHTEEVCGLKWSES 229
Query: 641 GSLCASG 661
G ASG
Sbjct: 230 GKKLASG 236
Score = 27.9 bits (59), Expect = 6.3
Identities = 8/30 (26%), Positives = 18/30 (60%)
Frame = +2
Query: 341 HTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
HT++V + +S +++ SG D + +W+
Sbjct: 217 HTEEVCGLKWSESGKKLASGGNDNVVHIWD 246
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 35.9 bits (79), Expect = 0.024
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 290 LRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECK 448
+ LW + H+ VL +A S D + IV+G+ D+T++ WN K
Sbjct: 410 IMLWKYPSMSKVATLTGHSMRVLYLATSPDGQTIVTGAGDETLRFWNVFPSVK 462
Score = 34.3 bits (75), Expect = 0.073
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKT-TRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAEC 445
SGS D+ + D+ + H +V + +S D+R++ SG D + +WN ++
Sbjct: 272 SGSRDRNILQHDIRVQSDFVSKLVGHKSEVCGLKWSHDDRELASGGNDNQLLVWNNHSQ- 330
Query: 446 KYTIQDDGHSDWVSCVRFSPNMPTPL 523
+ ++ H+ V + +SP+ + L
Sbjct: 331 QPILKLTEHTAAVKAITWSPHQSSLL 356
>At4g28450.1 68417.m04071 transducin family protein / WD-40 repeat
family protein SOF1 (involved in rRNA processing)
protein-yeast
Length = 442
Score = 35.9 bits (79), Expect = 0.024
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKD---VLSVAFSVDNRQIVSGSRDKTIKLWNTL 436
++GS+D+++R++ G + + HTK V V +S D ++SGS D ++LW
Sbjct: 295 VTGSYDRSVRIFPYNGGHSREIY--HTKRMQRVFCVKYSCDATYVISGSDDTNLRLWKAK 352
Query: 437 A 439
A
Sbjct: 353 A 353
Score = 31.5 bits (68), Expect = 0.51
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +2
Query: 464 DGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHLGHSGYLNTVTVSPDG 643
DGH D VSC+ +PN + + ++ IS + + GH G + +T S DG
Sbjct: 53 DGHRDGVSCMAKNPNYLKGIFSASMDGDIRLWDIS-SRRTVCQFPGHQGAVRGLTASTDG 111
Query: 644 SLCAS 658
++ S
Sbjct: 112 NVLVS 116
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 57 GTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLT 170
G + GH V+ +A NP Y I S+S D + +W ++
Sbjct: 50 GAMDGHRDGVSCMAKNPNYLKGIFSASMDGDIRLWDIS 87
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +2
Query: 191 YTSKAFIRSFALHF*CCAV**RNYALSGSWDKTLRLWDLAAGK 319
Y +K R F + + C A Y +SGS D LRLW A +
Sbjct: 317 YHTKRMQRVFCVKYSCDAT----YVISGSDDTNLRLWKAKASE 355
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 35.9 bits (79), Expect = 0.024
Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDH---TKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
+GS D +L +W+ ++ + H T+ + + + ++ +SGS+D ++ + N +
Sbjct: 214 TGSDDASLIVWNPKTCESIHIVKGHPYHTEGLTCLDINSNSSLAISGSKDGSVHIVNIVT 273
Query: 440 ECKYTIQDDGHSDWVSCVRFSPNMPT 517
K + H+D V CV+FSP+ T
Sbjct: 274 G-KVVSSLNSHTDSVECVKFSPSSAT 298
Score = 33.9 bits (74), Expect = 0.096
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +2
Query: 263 ALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQI---VSGSRDKTIKLWN 430
A+SGS D ++ + ++ GK HT V V FS + I +G DK + +W+
Sbjct: 257 AISGSKDGSVHIVNIVTGKVVSSLNSHTDSVECVKFSPSSATIPLAATGGMDKKLIIWD 315
Score = 32.7 bits (71), Expect = 0.22
Identities = 19/79 (24%), Positives = 33/79 (41%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECK 448
+G D LW + G H V +AFS D + + SG D +++++ +
Sbjct: 88 TGGGDDKAFLWKIGNGDWAAELPGHKDSVSCLAFSYDGQLLASGGLDGVVQIFDASSGTL 147
Query: 449 YTIQDDGHSDWVSCVRFSP 505
+ DG + VR+ P
Sbjct: 148 KCVL-DGPGAGIEWVRWHP 165
Score = 31.5 bits (68), Expect = 0.51
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT 433
Y +G + T+ +WD G + H V +++ S + IVS S D T +++ +
Sbjct: 342 YLATGCANGTVSIWDSLLGNCVHTYHGHQDAVQAISVSTNTDFIVSVSVDNTARVFES 399
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 35.9 bits (79), Expect = 0.024
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
+ +GS D T++ W L G H K V+S V N + SGS D T++LW+
Sbjct: 599 HVYTGSGDNTIKAWSLQDGSLLCTMSGH-KSVVSTLVVV-NGVLYSGSWDGTVRLWS 653
Score = 32.7 bits (71), Expect = 0.22
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 16/81 (19%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHT------KDVLSVAFSVDNRQIVS----------G 400
SGSWD T+RLW L+ + T D L + + N I+S G
Sbjct: 642 SGSWDGTVRLWSLSDNSLLTVLGEETPGIIWRDDTLMKSMKIQNGAILSIAVNGKWLFTG 701
Query: 401 SRDKTIKLWNTLAECKYTIQD 463
DKTI + L K +QD
Sbjct: 702 GWDKTINVQGNLGRLKRNVQD 722
>At5g10940.1 68418.m01269 transducin family protein / WD-40 repeat
family protein unnamed ORF cDNA FLJ10872, Homo sapiens,
EMBL:AK001734; contains Pfam PF00400: WD domain, G-beta
repeat (6 copies,1 weak)
Length = 757
Score = 35.5 bits (78), Expect = 0.032
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +2
Query: 326 RRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSCVRFSP 505
+ E H V ++A++ + ++SGS D I +WN + D GH+ + C +F P
Sbjct: 44 QELEGHQGCVNALAWNSNGSLLISGSDDLRINIWNYSSRKLLHSIDTGHTANIFCTKFVP 103
Query: 506 NMPTPLLYPVVG 541
L+ G
Sbjct: 104 ETSDELVVSGAG 115
Score = 31.9 bits (69), Expect = 0.39
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFED-HTKDVLSVAF--SVDNRQIVSGSRDKTIKLWNT 433
+SGS D + +W+ ++ K + HT ++ F + +VSG+ D ++L+NT
Sbjct: 66 ISGSDDLRINIWNYSSRKLLHSIDTGHTANIFCTKFVPETSDELVVSGAGDAEVRLFNT 124
>At4g35140.1 68417.m04996 transducin family protein / WD-40 repeat
family protein contains 6 (3 significant) WD-40 repeats;
similar to PC326 protein (GI:200241) (PIR2:S37694)
[Mus musculus]; Human (H326) mRNA, Homo sapiens,
gb:U06631
Length = 496
Score = 35.5 bits (78), Expect = 0.032
Identities = 26/107 (24%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Frame = +2
Query: 326 RRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN-TLAECKYTIQDDGHSDWVSCVRFS 502
++ E H V +V+F+ + ++SGS D+ + LW+ L K + GH++ V +F
Sbjct: 53 KKLEKHKGCVNTVSFNAEGDVLISGSDDRRVVLWDWQLGNVKLSFH-SGHANNVFQAKFM 111
Query: 503 P-NMPTPLLYPVVGTELSRSGISLNCKLKINHLG-HSGYLNTVTVSP 637
P + ++ + R+ I K++ + LG H G + + + P
Sbjct: 112 PFSDDRTIVTCAADGMVRRASILEGDKVETSFLGLHQGRAHKLCIEP 158
Score = 27.5 bits (58), Expect = 8.4
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFED-HTKDVLSVAFS--VDNRQIVSGSRDKTIK 421
+SGS D+ + LWD G F H +V F D+R IV+ + D ++
Sbjct: 75 ISGSDDRRVVLWDWQLGNVKLSFHSGHANNVFQAKFMPFSDDRTIVTCAADGMVR 129
>At3g45620.1 68416.m04927 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats; similar to
PC326 protein (GI:200241) (PIR2:S37694) [Mus
musculus];Human (H326) translated mRNA - Homo sapiens,
EMBL:HS06631
Length = 481
Score = 35.5 bits (78), Expect = 0.032
Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
Frame = +2
Query: 329 RFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSCVRFSPN 508
+ H V +V F+ +VSGS D+ I LWN L+ + GH + V +F P
Sbjct: 50 KLNGHEGCVNAVEFNSTGDVLVSGSDDRQIMLWNWLSGSRKLSYPSGHCENVFQTKFIPF 109
Query: 509 MPTPLLYPVVGTELSRSG-ISLNCKLKINHLG-HSGYLNTVTVSP 637
+ R G I N K++ LG H G + + V P
Sbjct: 110 TDDRTIITSGADGQVRLGQILENGKVETKRLGRHHGRVYKLAVLP 154
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 35.5 bits (78), Expect = 0.032
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTRRFEDHTKDVLSVA--FSVDNRQIVSGSRDKTIKLW 427
DKT+++WD A G FE H V SV + + + I S + D IK W
Sbjct: 485 DKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAW 535
Score = 33.9 bits (74), Expect = 0.096
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT 433
N G D T++++++ + + + H+K + +AFS +VS D + +WNT
Sbjct: 890 NIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNT 948
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Frame = +2
Query: 290 LRLWDLAAGKTTRR---FEDHTKDVLSVAFSVDNRQ--IVSGSRDKTIKLWNTLAECK-Y 451
++L+ G+ R+ + H V ++FS N+Q +++ DKTIK+W+ K +
Sbjct: 441 VQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQLCVITCGDDKTIKVWDAATGVKRH 500
Query: 452 TIQDDGHSDWVSCVRFSPNM 511
T + + C + N+
Sbjct: 501 TFEGHEAPVYSVCPHYKENI 520
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 35.5 bits (78), Expect = 0.032
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTRRFEDHTKDVLSVA--FSVDNRQIVSGSRDKTIKLW 427
DKT+++WD A G FE H V SV + + + I S + D IK W
Sbjct: 485 DKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAW 535
Score = 33.9 bits (74), Expect = 0.096
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT 433
N G D T++++++ + + + H+K + +AFS +VS D + +WNT
Sbjct: 890 NIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNT 948
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Frame = +2
Query: 290 LRLWDLAAGKTTRR---FEDHTKDVLSVAFSVDNRQ--IVSGSRDKTIKLWNTLAECK-Y 451
++L+ G+ R+ + H V ++FS N+Q +++ DKTIK+W+ K +
Sbjct: 441 VQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQLCVITCGDDKTIKVWDAATGVKRH 500
Query: 452 TIQDDGHSDWVSCVRFSPNM 511
T + + C + N+
Sbjct: 501 TFEGHEAPVYSVCPHYKENI 520
>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 487
Score = 35.1 bits (77), Expect = 0.042
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +2
Query: 317 KTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSCVR 496
K + H KDVL + +S D+ ++SGS D + +W+ + I D H +V V
Sbjct: 103 KVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIWDVNKGSVHQIL-DAHCHYVQGVA 161
Query: 497 FSP 505
+ P
Sbjct: 162 WDP 164
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
Y +SGS D + +WD+ G + + H V VA+ + + S S D+T +++
Sbjct: 126 YLISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAWDPLAKYVASLSSDRTCRIYANKP 185
Query: 440 ECK 448
+ K
Sbjct: 186 QTK 188
>At5g64630.1 68418.m08121 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 397
Score = 35.1 bits (77), Expect = 0.042
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +2
Query: 317 KTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSCVR 496
K + H KDVL + +S D+ ++SGS D + +W+ + I D H +V V
Sbjct: 103 KVHKSLSFHRKDVLDLQWSPDDAYLISGSVDNSCIIWDVNKGSVHQIL-DAHCHYVQGVA 161
Query: 497 FSP 505
+ P
Sbjct: 162 WDP 164
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
Y +SGS D + +WD+ G + + H V VA+ + + S S D+T +++
Sbjct: 126 YLISGSVDNSCIIWDVNKGSVHQILDAHCHYVQGVAWDPLAKYVASLSSDRTCRIYANKP 185
Query: 440 ECK 448
+ K
Sbjct: 186 QTK 188
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 35.1 bits (77), Expect = 0.042
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGK--TTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAE 442
+ S+D T +W + E H +V SV+++ + + SRDK++ +W L
Sbjct: 91 TASFDGTTGIWKNYGSEFECISTLEGHENEVKSVSWNASGSCLATCSRDKSVWIWEVLEG 150
Query: 443 CKYTIQD--DGHSDWVSCVRFSPNM 511
+Y GH+ V V++ P M
Sbjct: 151 NEYDCAAVLTGHTQDVKMVQWHPTM 175
Score = 33.5 bits (73), Expect = 0.13
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 8/86 (9%)
Frame = +2
Query: 269 SGSWDKTLRLWD---LAAGKTTRRF--EDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT 433
S S D T+R+W+ L+ T + E HT+ V S A+S + + + S D T +W
Sbjct: 44 SCSGDNTVRIWEQSSLSRSWTCKTVLEETHTRTVRSCAWSPSGQLLATASFDGTTGIWKN 103
Query: 434 LA---ECKYTIQDDGHSDWVSCVRFS 502
EC T+ +GH + V V ++
Sbjct: 104 YGSEFECISTL--EGHENEVKSVSWN 127
Score = 29.9 bits (64), Expect = 1.6
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Frame = +2
Query: 275 SWDKTLRLWDLAAGKT---TRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW-----N 430
S DK++ +W++ G HT+DV V + + S S D TIK+W +
Sbjct: 137 SRDKSVWIWEVLEGNEYDCAAVLTGHTQDVKMVQWHPTMDVLFSCSYDNTIKVWWSEDDD 196
Query: 431 TLAECKYTI--QDDGHSDWVSCVRFS 502
+C T+ ++GHS V + F+
Sbjct: 197 GEYQCVQTLGESNNGHSSTVWSISFN 222
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 341 HTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT 433
H+ V S++F+ ++V+ S D T+K+W T
Sbjct: 212 HSSTVWSISFNAAGDKMVTCSDDLTLKIWGT 242
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 514 NPIIVSCGWDRTVKVWHLTKL 576
+PI+ SC D TV++W + L
Sbjct: 39 SPILASCSGDNTVRIWEQSSL 59
>At2g19430.1 68415.m02267 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; contains 7 Trp-Asp WD-40
repeats
Length = 367
Score = 35.1 bits (77), Expect = 0.042
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
D WD+ +GK F+ H+ + +V QI++GS D T ++W+
Sbjct: 180 DSCAYCWDVESGKIKMTFKGHSDYLHTVVSRSSASQILTGSEDGTARIWD 229
>At1g47610.1 68414.m05288 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein (GI:2739374)
[Arabidopsis thaliana]
Length = 351
Score = 35.1 bits (77), Expect = 0.042
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW 427
S SWD+T+++W + K + H V SV + + +GS D T+K+W
Sbjct: 152 SASWDRTVKVWRIHDLKCIESIKAHDDAVNSV--TTAESLVFTGSADGTVKVW 202
Score = 28.7 bits (61), Expect = 3.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 520 IIVSCGWDRTVKVWHLTKL 576
++ S WDRTVKVW + L
Sbjct: 149 LLYSASWDRTVKVWRIHDL 167
>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 402
Score = 34.7 bits (76), Expect = 0.055
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGK-TTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTL--A 439
S SWD ++R WD+ GK + F + + V + I +G D +++W+
Sbjct: 288 SSSWDHSVRRWDVETGKDSLNLFCGKALNTVDVG-GESSALIAAGGSDPILRVWDPRKPG 346
Query: 440 ECKYTIQDDGHSDWVSCVRF 499
Q HS W+S ++
Sbjct: 347 TSAPVFQFSSHSSWISACKW 366
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 34.7 bits (76), Expect = 0.055
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGK-TTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTL--A 439
S SWD ++R WD+ GK + F + + V + I +G D +++W+
Sbjct: 288 SSSWDHSVRRWDVETGKDSLNLFCGKALNTVDVG-GESSALIAAGGSDPILRVWDPRKPG 346
Query: 440 ECKYTIQDDGHSDWVSCVRF 499
Q HS W+S ++
Sbjct: 347 TSAPVFQFSSHSSWISACKW 366
Score = 31.1 bits (67), Expect = 0.68
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLA 439
+ LS S+D + LWDL + H VLS + +VSG D +++ + +A
Sbjct: 373 HLLSASYDGKIMLWDLRTAWPLSVIDTHNDKVLSADW-WKGESVVSGGADSNLRISSGIA 431
>At5g14530.1 68418.m01703 transducin family protein / WD-40 repeat
family protein similar to Will die slowly protein
(SP:Q9V3J8) [Drosophila melanogaster] ; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies, 1 weak)
Length = 330
Score = 34.7 bits (76), Expect = 0.055
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +2
Query: 275 SWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
S ++LR + + R F+ H V+S+ S N +SGS D++++LW+
Sbjct: 91 STGESLRYLSMYDNRILRYFKGHKDRVVSLCMSPINDSFMSGSLDRSVRLWD 142
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 356 LSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSCVRFSP 505
+ F+ D + ++SGS D T+ WN + + + + VSC++++P
Sbjct: 248 IEATFTPDGKYVLSGSGDGTLHAWN-IENPSEVARWENNIGVVSCLKWAP 296
>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1135
Score = 34.7 bits (76), Expect = 0.055
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTRRFEDHTKDVLSVA-FSVDNRQ-IVSGSRDKTIKLW 427
DKT+++WD G FE H V SV +N Q I S + D IK W
Sbjct: 487 DKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIKAW 537
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 341 HTKDVLSVAFSVDNRQ--IVSGSRDKTIKLWNTL 436
H +V +AFS N+Q +V+ DKTIK+W+ +
Sbjct: 463 HAGNVNDLAFSQPNQQLCVVTCGEDKTIKVWDAV 496
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/58 (22%), Positives = 28/58 (48%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
N G D +++++++ + + + H K V +AFS +VS D + +W+
Sbjct: 900 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGADSQLCVWS 957
>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1137
Score = 34.7 bits (76), Expect = 0.055
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTRRFEDHTKDVLSVA-FSVDNRQ-IVSGSRDKTIKLW 427
DKT+++WD G FE H V SV +N Q I S + D IK W
Sbjct: 487 DKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIKAW 537
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 341 HTKDVLSVAFSVDNRQ--IVSGSRDKTIKLWNTL 436
H +V +AFS N+Q +V+ DKTIK+W+ +
Sbjct: 463 HAGNVNDLAFSQPNQQLCVVTCGEDKTIKVWDAV 496
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/58 (22%), Positives = 28/58 (48%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
N G D +++++++ + + + H K V +AFS +VS D + +W+
Sbjct: 900 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGADSQLCVWS 957
>At4g38480.1 68417.m05438 transducin family protein / WD-40 repeat
family protein contains contains Pfam PF00400: WD
domain, G-beta repeat (7 copies, 3 weak);similar to gene
PC326 protein - mouse, PIR2:S37694
Length = 471
Score = 34.3 bits (75), Expect = 0.073
Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Frame = +2
Query: 326 RRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSDWVSCVRFSP 505
++ + H V +V+F+ D ++SGS D+ + LW+ D GH + + +F P
Sbjct: 49 KKLDKHKGCVNTVSFNADGDILLSGSDDRQVILWDWQTASVKLSFDSGHFNNIFQAKFMP 108
Query: 506 -NMPTPLLYPVVGTELSRSGISLNCKLKINHLG-HSGYLNTVTVSP 637
+ ++ ++ S I + +++ + LG H G ++ + V P
Sbjct: 109 FSDDRTIVTSAADKQVRYSKILESGQVETSLLGKHQGPVHKLAVEP 154
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFED-HTKDVLSVAFS--VDNRQIVSGSRDKTIK 421
LSGS D+ + LWD F+ H ++ F D+R IV+ + DK ++
Sbjct: 71 LSGSDDRQVILWDWQTASVKLSFDSGHFNNIFQAKFMPFSDDRTIVTSAADKQVR 125
>At3g13300.2 68416.m01675 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1309
Score = 34.3 bits (75), Expect = 0.073
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 51 LRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQ 200
LR RGH+ VT +A + DM+ S S D + VWK++ PQ
Sbjct: 194 LRSLFRGHSQRVTDMAFFAEDVDMLASVSLDGKVFVWKISEGSEGEDQPQ 243
>At3g13300.1 68416.m01674 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1344
Score = 34.3 bits (75), Expect = 0.073
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 51 LRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQ 200
LR RGH+ VT +A + DM+ S S D + VWK++ PQ
Sbjct: 229 LRSLFRGHSQRVTDMAFFAEDVDMLASVSLDGKVFVWKISEGSEGEDQPQ 278
>At3g01340.1 68416.m00051 protein transport protein SEC13 family
protein / WD-40 repeat family protein similar to Protein
transport protein SEC13 SP|Q04491 {Saccharomyces
cerevisiae} and SEC13 (SP:P53024) [Pichia pastoris]
Length = 302
Score = 34.3 bits (75), Expect = 0.073
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 60 TLRGHNGWVTQIA-TNPKYPDMILSSSRDKTLIVWK 164
TL GH G V Q+A +PK+ ++ S S D +I+WK
Sbjct: 51 TLTGHRGPVWQVAWAHPKFGSLLASCSYDGQIILWK 86
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = +2
Query: 386 QIVSGSRDKTIKLW-----NTLAECKYTIQDDGHSDWVSCVRFSPNMPTPLLYPVVGTE 547
++ SG D T+K+W + +C + H+DWV V ++PN+ P G+E
Sbjct: 178 KLASGGCDSTVKVWKFSNGSWKMDCFPALNK--HTDWVRDVAWAPNLGLPKSTIASGSE 234
>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to block of proliferation protein Bop1
(GI:1679772) [Mus musculus]
Length = 753
Score = 34.3 bits (75), Expect = 0.073
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +2
Query: 332 FEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT-LAECKYTIQDDGHSDWVSCVRFSPN 508
++ HT V S++ I SGS D ++++W C Q D + + CV ++P
Sbjct: 419 YKGHTGAVTSISTDSSGEWIASGSTDGSVRMWEVETGRCLKVWQFD---EAIMCVAWNPL 475
Query: 509 MPTPLLYPVVGTEL 550
P+L +G +L
Sbjct: 476 SRLPVLAVAMGRDL 489
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 34.3 bits (75), Expect = 0.073
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTRRFEDHTKDVLSVA--FSVDNRQIVSGSRDKTIKLW 427
DKT+++WD A G FE H V S+ + + + I S + D IK W
Sbjct: 485 DKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAW 535
Score = 33.9 bits (74), Expect = 0.096
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT 433
N G D T++++++ + + + H+K + +AFS +VS D + +WNT
Sbjct: 879 NIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNT 937
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 34.3 bits (75), Expect = 0.073
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTRRFEDHTKDVLSVA--FSVDNRQIVSGSRDKTIKLW 427
DKT+++WD A G FE H V S+ + + + I S + D IK W
Sbjct: 485 DKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAW 535
Score = 33.9 bits (74), Expect = 0.096
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT 433
N G D T++++++ + + + H+K + +AFS +VS D + +WNT
Sbjct: 879 NIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNT 937
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 34.3 bits (75), Expect = 0.073
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
D +R D AGK H K V V +S Q+++GS DKTIK W+
Sbjct: 77 DTKVRRIDFNAGKEDV-LGTHEKPVRCVEYSYAAGQVITGSWDKTIKCWD 125
Score = 29.9 bits (64), Expect = 1.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRR 331
++GSWDKT++ WD T R
Sbjct: 113 ITGSWDKTIKCWDPRGASGTER 134
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 33.9 bits (74), Expect = 0.096
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +3
Query: 63 LRGHNGWVTQIATNPK--YPDMILSSSRDKTLIVW 161
LRGH G VT IA +P+ P +LSSS D T +W
Sbjct: 325 LRGHTGAVTAIAFSPRPGSPYQLLSSSDDGTCRIW 359
Score = 32.7 bits (71), Expect = 0.22
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSV---DNRQIVSGSRDKTIKLWN 430
+ S S D +R+W L G HT V ++AFS Q++S S D T ++W+
Sbjct: 301 FIASASNDCVIRVWRLPDGLPVSVLRGHTGAVTAIAFSPRPGSPYQLLSSSDDGTCRIWD 360
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 33.9 bits (74), Expect = 0.096
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS-VDNRQIVSGSRDKTIKLWNTL 436
+ +SG D ++ WD+A H V S V++ +V+GS D T+K+W+
Sbjct: 150 HLVSGGDDGVVKYWDVAGATVISDLLGHKDYVRCGDCSPVNDSMLVTGSYDHTVKVWDAR 209
Query: 437 AECKYTIQDDGHSDWVSCVRFSPN 508
I + H V V + P+
Sbjct: 210 VHTSNWIAEINHGLPVEDVVYLPS 233
Score = 33.1 bits (72), Expect = 0.17
Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 3/126 (2%)
Frame = +2
Query: 290 LRLWDLAAGKTTRRFEDHTKDVLSVAFSV-DNRQIVSGSRDKTIKLWNTLAECKYTIQDD 466
++++D+ R H+ V + V D +VSG D +K W+ T+ D
Sbjct: 117 VQVFDIKERMALRTLRSHSAPARFVKYPVQDKLHLVSGGDDGVVKYWDVAGA---TVISD 173
Query: 467 --GHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHLGHSGYLNTVTVSPD 640
GH D+V C SP + L+ + ++ I + H + V P
Sbjct: 174 LLGHKDYVRCGDCSPVNDSMLVTGSYDHTVKVWDARVHTSNWIAEINHGLPVEDVVYLPS 233
Query: 641 GSLCAS 658
G L A+
Sbjct: 234 GGLIAT 239
>At2g30050.1 68415.m03654 transducin family protein / WD-40 repeat
family protein similar to SEC13-related protein
(SP:P55735) [Homo sapiens]
Length = 302
Score = 33.9 bits (74), Expect = 0.096
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 60 TLRGHNGWVTQIA-TNPKYPDMILSSSRDKTLIVWK 164
TL GH G V ++A +PKY ++ S S D +I+WK
Sbjct: 51 TLTGHRGPVWEVAWAHPKYGSILASCSYDGQVILWK 86
Score = 31.1 bits (67), Expect = 0.68
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +2
Query: 386 QIVSGSRDKTIKLWNTL-----AECKYTIQDDGHSDWVSCVRFSPNMPTP 520
++ SG D T+K+W +C +Q H+DWV V ++PN+ P
Sbjct: 178 KLASGGCDNTVKVWKLANGSWKMDCFPALQK--HTDWVRDVAWAPNLGLP 225
>At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat family
protein contains G-protein beta WD-40 repeats
Length = 539
Score = 33.5 bits (73), Expect = 0.13
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECK 448
SGSWD ++R+WD ++ K + H+ V +A SGS + +W+ +E
Sbjct: 272 SGSWDMSVRIWDRSSMKCVKTLR-HSDWVWGLAPHETTLASTSGS---DVYIWDVSSETP 327
Query: 449 YTIQDDGH 472
I D H
Sbjct: 328 LAIIPDAH 335
Score = 33.1 bits (72), Expect = 0.17
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +2
Query: 275 SWDKTLRLWDLAA---GKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN-TLAE 442
S D L+DL KT R H + S+A +D I SGS D ++++W+ + +
Sbjct: 231 SLDGLRNLFDLTGFQKEKTEFRLWGHEGPITSLA--LDMTSIFSGSWDMSVRIWDRSSMK 288
Query: 443 CKYTIQDDGHSDWV 484
C T++ HSDWV
Sbjct: 289 CVKTLR---HSDWV 299
>At3g06880.1 68416.m00817 transducin family protein / WD-40 repeat
family protein similar to PAK/PLC-interacting protein 1
(GI:4211689) {Homo sapiens}
Length = 1115
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFE--DHTKDVLSVAFSVDNRQIVSGSRDKTIKLW 427
SG D ++R+W++ T ++ +H V + S ++SGS DKTI++W
Sbjct: 868 SGFSDGSIRVWNVNKKIATLLWDIKEHKSTVTCFSLSETGECVLSGSADKTIRVW 922
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKD 352
LSGS DKT+R+W + GK TKD
Sbjct: 911 LSGSADKTIRVWQIVKGKLECAEVIKTKD 939
>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
sapiens]
Length = 726
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV-SGSRDKTIKLWN-TLAEC 445
D T+++ D G + H + V F + +IV SGS D ++LWN T +EC
Sbjct: 127 DHTVKIIDCETGNCLKVLTGHRRTPWVVRFHPHHSEIVASGSLDLEVRLWNTTTSEC 183
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 347 KDVLSVAFSVDNRQIVSGSRDKTIKLWN-TLAECKYTIQDDGHSDWVSCVRFSPN 508
+ ++ AFS D R + S D T+K+ + C + + WV VRF P+
Sbjct: 107 RSTIAAAFSTDGRTLASTHGDHTVKIIDCETGNCLKVLTGHRRTPWV--VRFHPH 159
>At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; WD-repeat protein, carrot, PIR:T14352
Length = 444
Score = 33.1 bits (72), Expect = 0.17
Identities = 24/127 (18%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
Frame = +2
Query: 287 TLRLWDLAAGKTTR--RFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQ 460
T+ LWD ++G T+ ++ V S+ ++ D + G + ++LW+ ++ +
Sbjct: 147 TVYLWDASSGSTSELVTIDEDKGPVTSINWTQDGLDLAVGLDNSEVQLWDCVSNRQVRTL 206
Query: 461 DDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHLGHSGYLNTVTVSPD 640
GH V + + ++ L + ++ + + + + +LGH+ + + S
Sbjct: 207 RGGHESRVGSLAWDNHI---LTTGGMDGKIVNNDVRIRSSIVETYLGHTEEVCGLKWSES 263
Query: 641 GSLCASG 661
G+ ASG
Sbjct: 264 GNKQASG 270
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +2
Query: 272 GSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAE 442
G L LW + HT VL +A S + + S + D+ ++LWN E
Sbjct: 364 GFTQNQLTLWKYPSMSKMAELNGHTSRVLFMAQSPNGCTVASAAGDENLRLWNVFGE 420
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 341 HTKDVLSVAFSVDNRQIVSGSRDKTIKLWN-TLAECKYTIQ 460
HT++V + +S + SG D + +W+ +LA K T Q
Sbjct: 251 HTEEVCGLKWSESGNKQASGGNDNVVHIWDRSLASSKQTRQ 291
>At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI2 (SP:O22468) [Arabidopsis thaliana] WD-40
repeats (PF0400);
Length = 415
Score = 33.1 bits (72), Expect = 0.17
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 63 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTR 173
+ H G V Q+ +P + ++ SS D+ L+VW L R
Sbjct: 300 MSSHEGEVFQVEWDPNHETVLASSGEDRRLMVWDLNR 336
Score = 31.9 bits (69), Expect = 0.39
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTR------RFEDHTKDVLSVAFSVDNRQIV-SGSRDKTI 418
Y LSGS D+ + LWD++A + +E H + V++ + N + S D +
Sbjct: 183 YLLSGSQDQKICLWDVSATPQDKVLNAMFVYEGHESAIADVSWHMKNENLFGSAGEDGRL 242
Query: 419 KLWNTLAECKYTIQDDGHSDWVSCVRFSP 505
+W+T + Q H V+ + F+P
Sbjct: 243 VIWDTRTN-QMQHQVKVHEREVNYLSFNP 270
>At1g76260.1 68414.m08855 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to retinoblastoma A associated protein; RbAp48
(GI:3309245) [Xenopus laevis]
Length = 350
Score = 33.1 bits (72), Expect = 0.17
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 63 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVW 161
L GH W + NP+Y ++ILS D + +W
Sbjct: 248 LPGHTHWTWAVRCNPEYEELILSVGTDSAVNLW 280
>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Rbap46 polypeptide (GI:9454362) [Gallus
gallus]
Length = 351
Score = 33.1 bits (72), Expect = 0.17
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 63 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVW 161
L GH W + NP+Y +ILS+ D + +W
Sbjct: 248 LPGHTHWTWAVRCNPEYDGLILSAGTDSVVNLW 280
>At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis};
Length = 466
Score = 32.7 bits (71), Expect = 0.22
Identities = 24/127 (18%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
Frame = +2
Query: 287 TLRLWDLAAGKTTR--RFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQ 460
T+ LWD ++G T+ ++ V S+ ++ D + G + ++LW+ ++ +
Sbjct: 144 TVYLWDASSGSTSELVTIDEDKGPVTSINWTQDGLDLAVGLDNSEVQLWDFVSNRQVRTL 203
Query: 461 DDGHSDWVSCVRFSPNMPTPLLYPVVGTELSRSGISLNCKLKINHLGHSGYLNTVTVSPD 640
GH V + ++ ++ L + ++ + + + + +LGH+ + + S
Sbjct: 204 IGGHESRVGSLAWNNHI---LTTGGMDGKIVNNDVRIRSSIVGTYLGHTEEVCGLKWSES 260
Query: 641 GSLCASG 661
G ASG
Sbjct: 261 GKKLASG 267
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = +2
Query: 272 GSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAE 442
G L LW + HT VL +A S + + S + D+ ++LWN E
Sbjct: 362 GFTQNQLTLWKYPSMSKMAELNGHTSRVLFMAQSPNGCTVASAAGDENLRLWNVFGE 418
>At3g20740.1 68416.m02624 fertilization-independent endosperm
protein (FIE) contains 6 WD-40 repeats (PF00400);
identical to fertilization-independent endosperm protein
(GI:4567095) [Arabidopsis thaliana]
Length = 369
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/44 (31%), Positives = 28/44 (63%)
Frame = +3
Query: 36 SETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKL 167
SET+ +L GH V +I T P P +++++S+D+++ +W +
Sbjct: 117 SETI--HKSLVGHGDSVNEIRTQPLKPQLVITASKDESVRLWNV 158
>At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400);
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]
Length = 837
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAF-SVDNRQIVSGSRDKT 415
S ++D +++WD+A + ++H K V S+ S D + SGS D T
Sbjct: 601 SSNFDGVVQIWDVARSQLVTEMKEHKKRVWSIDISSADPTLLASGSDDGT 650
Score = 31.5 bits (68), Expect = 0.51
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 272 GSWDKTLRLWDLAAGKTTR-RFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
GS D + +DL K H+K V V F VD+ +VS S D T+KLW+
Sbjct: 679 GSADHKVYYYDLRNPKIPLCTMIGHSKTVSYVKF-VDSSTLVSSSTDNTLKLWD 731
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 32.7 bits (71), Expect = 0.22
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS---VDNRQIVSGSRDKTIKLWN 430
S S D +R+W L G HT V ++AFS Q++S S D T ++W+
Sbjct: 364 SASNDFVIRVWRLPDGMPISVLRGHTGAVTAIAFSPRQASVYQLLSSSDDGTCRIWD 420
Score = 32.7 bits (71), Expect = 0.22
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +3
Query: 63 LRGHNGWVTQIATNPKYPDM--ILSSSRDKTLIVW 161
LRGH G VT IA +P+ + +LSSS D T +W
Sbjct: 385 LRGHTGAVTAIAFSPRQASVYQLLSSSDDGTCRIW 419
>At1g52730.2 68414.m05959 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 32.7 bits (71), Expect = 0.22
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT 433
++G D +R++D G+ + H V V F+ SGS D TI++W T
Sbjct: 244 VAGGEDMWVRVFDFYTGEEIGCNKGHHGPVHCVRFTPTGLSYASGSEDGTIRIWQT 299
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 290 LRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
+RLWD+ +GK + E + V S S D R I + T+K W+
Sbjct: 170 VRLWDVRSGKIVQTLETKS-PVTSAEVSQDGRYITTAD-GSTVKFWD 214
>At1g52730.1 68414.m05958 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 32.7 bits (71), Expect = 0.22
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT 433
++G D +R++D G+ + H V V F+ SGS D TI++W T
Sbjct: 244 VAGGEDMWVRVFDFYTGEEIGCNKGHHGPVHCVRFTPTGLSYASGSEDGTIRIWQT 299
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 290 LRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
+RLWD+ +GK + E + V S S D R I + T+K W+
Sbjct: 170 VRLWDVRSGKIVQTLETKS-PVTSAEVSQDGRYITTAD-GSTVKFWD 214
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 32.7 bits (71), Expect = 0.22
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV-SGSRDKTIKLWNT-LAEC 445
D T+++ D GK + H + V F + +IV SGS D ++LWN EC
Sbjct: 124 DHTVKIIDCETGKCLKILTGHRRTPWVVRFHPRHSEIVASGSLDHEVRLWNAKTGEC 180
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
SGS D +RLW+ G+ R D + + S+AF + S K + +W+
Sbjct: 163 SGSLDHEVRLWNAKTGECIRT-HDFYRPIASIAFHAGGELLAVASGHK-LHIWH 214
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 347 KDVLSVAFSVDNRQIVSGSRDKTIKLWN-TLAECKYTIQDDGHSDWVSCVRFSP 505
+ ++ AFS D R + S D T+K+ + +C + + WV VRF P
Sbjct: 104 RSTIAAAFSSDGRTLASTHGDHTVKIIDCETGKCLKILTGHRRTPWV--VRFHP 155
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 32.7 bits (71), Expect = 0.22
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIV-SGSRDKTIKLWNT-LAEC 445
D T+++ D GK + H + V F + +IV SGS D ++LWN EC
Sbjct: 124 DHTVKIIDCETGKCLKILTGHRRTPWVVRFHPRHSEIVASGSLDHEVRLWNAKTGEC 180
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
SGS D +RLW+ G+ R D + + S+AF + S K + +W+
Sbjct: 163 SGSLDHEVRLWNAKTGECIRT-HDFYRPIASIAFHAGGELLAVASGHK-LHIWH 214
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 347 KDVLSVAFSVDNRQIVSGSRDKTIKLWN-TLAECKYTIQDDGHSDWVSCVRFSP 505
+ ++ AFS D R + S D T+K+ + +C + + WV VRF P
Sbjct: 104 RSTIAAAFSSDGRTLASTHGDHTVKIIDCETGKCLKILTGHRRTPWV--VRFHP 155
>At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 580
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +3
Query: 66 RGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTR 173
R H+G+VT++ + +++SSS DKTL +W L +
Sbjct: 451 RAHDGYVTKLVAPESH--LLVSSSLDKTLRIWDLRK 484
Score = 31.5 bits (68), Expect = 0.51
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRF--EDHTKDVLSVAFSVDNRQIVSGSRD 409
+S S DKTLR+WDL T + F + H V FS+ + ++S SR+
Sbjct: 469 VSSSLDKTLRIWDLRKSWTPQPFVVKGHNDGV--SGFSIWGKDVISISRN 516
>At4g35050.1 68417.m04974 WD-40 repeat protein (MSI3) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI3 (SP:O22469) [Arabidopsis thaliana]
Length = 424
Score = 32.3 bits (70), Expect = 0.29
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 63 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTR 173
L H G V Q+ +P + ++ SS D+ L+VW + R
Sbjct: 301 LSKHEGEVFQVEWDPNHETVLASSGEDRRLMVWDINR 337
Score = 31.9 bits (69), Expect = 0.39
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTR------RFEDHTKDVLSVAFSVDNRQIV-SGSRDKTI 418
Y LSGS D+ + LWD++A T + +E H + VA+ + N I S D +
Sbjct: 184 YLLSGSQDQRICLWDVSATATDKVLNPMHVYEGHQSIIEDVAWHMKNENIFGSAGDDCQL 243
Query: 419 KLWNTLAECKYTIQDDGHSDWVSCVRFSP 505
+W+ L + Q H ++ + F+P
Sbjct: 244 VIWD-LRTNQMQHQVKVHEREINYLSFNP 271
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW 427
N SG+ D ++++W L + + +HT V+S+ ++ ++S S D T+K+W
Sbjct: 278 NRLYSGAMDNSIKVWSLDNLQCIQTLTEHTSVVMSLI--CWDQFLLSCSLDNTVKIW 332
>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
family protein similar to signal transducer and
activator of transcription interacting protein 1
(GI:15929722) {Mus musculus}; similar to hypothetical
protein GB:AAD43147 GI:5430747 from (Arabidopsis
thaliana); contains Pfam PF00400: WD domain, G-beta
repeat (11 copies, 2 weak)
Length = 840
Score = 31.9 bits (69), Expect = 0.39
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 296 LWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
LW++ K R + H+ V + FS D+ ++S SRD+ +++
Sbjct: 631 LWEVGTWKAVGRLQSHSLTVTHLEFSYDDTLLLSVSRDRHFSVFS 675
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 8/43 (18%)
Frame = +3
Query: 63 LRGHNGWVTQIA------TNPKYPD--MILSSSRDKTLIVWKL 167
L+GH W+ + T + P+ M++SSS+DK + +WKL
Sbjct: 219 LKGHTDWIRSLDFSLPLHTTEEIPNSIMLVSSSQDKVIRIWKL 261
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +2
Query: 317 KTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
K + E H + + + +++ Q + SRDKT+K+W+
Sbjct: 687 KLMAKVEAHKRIIWACSWNPFGHQFATSSRDKTVKIWS 724
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 48 KLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRD 176
KL + H + + NP + +SSRDKT+ +W + D
Sbjct: 687 KLMAKVEAHKRIIWACSWNP-FGHQFATSSRDKTVKIWSVEND 728
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 31.5 bits (68), Expect = 0.51
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 63 LRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWK 164
L GH V +A NP +I S S DKT+ +W+
Sbjct: 16 LEGHTDRVWNVAWNPAADGVIASCSADKTVRIWE 49
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/77 (24%), Positives = 41/77 (53%)
Frame = +3
Query: 12 LFKPFSKMSETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYG 191
+++ F+ SE++ + LRGH V ++ N ++ + RDK++ +W++ +E++
Sbjct: 74 VWENFATDSESVSV---LRGHESEVKSVSWNAS-GSLLATCGRDKSVWIWEIQPEEDDEF 129
Query: 192 IPQKRLYGHSHFISDVV 242
L GHS + V+
Sbjct: 130 DTIAVLTGHSEDVKMVL 146
Score = 29.5 bits (63), Expect = 2.1
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Frame = +2
Query: 272 GSWDKTLRLWDLAA--GKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAEC 445
GS+D +W+ A ++ H +V SV+++ + + RDK++ +W E
Sbjct: 66 GSFDGNTCVWENFATDSESVSVLRGHESEVKSVSWNASGSLLATCGRDKSVWIWEIQPEE 125
Query: 446 KYTIQD----DGHSDWVSCVRFSPNM 511
GHS+ V V + P M
Sbjct: 126 DDEFDTIAVLTGHSEDVKMVLWHPTM 151
>At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-related
contains Pfam PF00400: WD domain, G-beta repeat; similar
to BEIGE (GI:3928547) [Rattus norvegicus]; lysosomal
trafficking regulator - Bos taurus, EMBL: AF114785
Length = 3471
Score = 31.5 bits (68), Expect = 0.51
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Frame = +3
Query: 36 SETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLT-----RDENNYGIPQ 200
S L+L +L H V + + Y MI SSS D T+I+W L+ R N+ +P
Sbjct: 3311 SRRLRLEKSLCAHTAKVICLRVSQPYM-MIASSSDDCTVIIWDLSSLSFVRQLPNFSVPV 3369
Query: 201 KRLYGHSHFISDVVLSSDVITHFPVLGTRLCVCGISLQARLPDD 332
+Y + V + V+ + + G L V S +LP D
Sbjct: 3370 TVVYINDLTGEIVTAAGSVLAVWSINGDCLSVVNTS---QLPTD 3410
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 341 HTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
H K V V +S Q+++GS DKT+K W+
Sbjct: 97 HDKAVRCVEYSYAAGQVITGSWDKTVKCWD 126
Score = 27.9 bits (59), Expect = 6.3
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +2
Query: 266 LSGSWDKTLRLWD 304
++GSWDKT++ WD
Sbjct: 114 ITGSWDKTVKCWD 126
>At1g03110.1 68414.m00288 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat domain 4 protein (GI:9955698) [Mus
musculus]
Length = 427
Score = 31.5 bits (68), Expect = 0.51
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 254 RNYALSGSWDKTLRLWDLAAG 316
+ Y +SGS D T+RLWD+ +G
Sbjct: 219 QGYLMSGSGDSTVRLWDITSG 239
>At5g45760.2 68418.m05626 transducin family protein / WD-40 repeat
family protein
Length = 334
Score = 31.1 bits (67), Expect = 0.68
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +2
Query: 341 HTKDVLSVAFSV---DNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSD 478
H V VAFS+ R ++SG DKT+K+W+ +C ++ +SD
Sbjct: 247 HNSAVSCVAFSLFQEKGRFLISGGNDKTVKIWDCF-KCLDPNNNNNNSD 294
>At5g45760.1 68418.m05625 transducin family protein / WD-40 repeat
family protein
Length = 360
Score = 31.1 bits (67), Expect = 0.68
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +2
Query: 341 HTKDVLSVAFSV---DNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHSD 478
H V VAFS+ R ++SG DKT+K+W+ +C ++ +SD
Sbjct: 273 HNSAVSCVAFSLFQEKGRFLISGGNDKTVKIWDCF-KCLDPNNNNNNSD 320
>At4g11270.1 68417.m01823 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
related to TGF-beta resistance-associated protein TRAG
(GI:15624071) {Mus musculus}; similar to
beta-transducin repeats containing protein - Homo
sapiens,PID:e1284220; 3' EST no_NP:TC8031
Length = 1446
Score = 31.1 bits (67), Expect = 0.68
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 266 LSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFS 373
+SGS D T+R+WDL +G H V + S
Sbjct: 553 ISGSMDCTIRIWDLESGNVIMIMHHHVAPVRQIILS 588
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 31.1 bits (67), Expect = 0.68
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +2
Query: 329 RFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDD 466
+ + H V + FS ++ QI++ S+D +I++WN +Y + +D
Sbjct: 284 QLKGHKSAVTWLCFSPNSEQIITASKDGSIRVWN--INVRYHLDED 327
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301 from
[Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 31.1 bits (67), Expect = 0.68
Identities = 11/49 (22%), Positives = 29/49 (59%)
Frame = +2
Query: 284 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
KT++ + + +G+TT H + V + F+ +++++ + D+ I +W+
Sbjct: 379 KTVKAFGMWSGRTTLMLRGHYESVNTCCFNSNDQELYTSGSDRQILVWS 427
>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 WD-40
repeats (PF00400) (2 weak)
Length = 1108
Score = 30.7 bits (66), Expect = 0.90
Identities = 14/58 (24%), Positives = 26/58 (44%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
N G D T+ ++++ + + + H K + +AFS +VS D I W+
Sbjct: 875 NVIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWS 932
>At4g21130.1 68417.m03055 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400); some
similarity to a group of proteins with homology to
mammalian apoptosis regulators identified in zebrafish
(PUBMED:10917738)Apaf-1(gi:7677507)
Length = 537
Score = 30.7 bits (66), Expect = 0.90
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW 427
SGS+D TL +W+ H ++LS+ ++ +++S RD+T++L+
Sbjct: 280 SGSYDGTLSIWNAEHRTYIESCFGHQSELLSID-ALGRERVLSVGRDRTMQLY 331
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +2
Query: 290 LRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
LR+ DL + R H V VA S D+ + S S+D TI W+
Sbjct: 127 LRVQDLQSSDKFRVIVKHQHSVTGVALSDDDSRGFSVSKDGTILHWD 173
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 332 FEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
F H V S+ F ++ SGS D T+ +WN
Sbjct: 259 FTGHCGIVSSLCFREGTAELFSGSYDGTLSIWN 291
>At5g56190.2 68418.m07011 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 447
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +2
Query: 269 SGSWDKTLRLWDL-AAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAEC 445
+G+ DKT R+WD ++ + + V S+ F+ D R + + +++T +
Sbjct: 336 TGNQDKTCRIWDTRKLSESVAVLKGNLGAVRSIRFTSDGRYVAMAEPADFVHIYDTKSGY 395
Query: 446 KYTIQDDGHSDWVSCVRFSPN 508
K + D + +S + FSP+
Sbjct: 396 KKEQEIDFFGE-ISGISFSPD 415
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = +2
Query: 296 LWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHS 475
L D + G+T + H + A+ + +G++DKT ++W+T + G+
Sbjct: 303 LVDTSNGQTIGTLKGHLDYSFASAWHPNGVTFATGNQDKTCRIWDTRKLSESVAVLKGNL 362
Query: 476 DWVSCVRFS 502
V +RF+
Sbjct: 363 GAVRSIRFT 371
>At5g56190.1 68418.m07010 WD-40 repeat family protein contains 3 (2
significant) WD-40 repeats (PF0400); similar to beta
transducin-like protein HET-E2C*40 (GI:17225208)
[Podospora anserina]
Length = 441
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/81 (23%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +2
Query: 269 SGSWDKTLRLWDL-AAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAEC 445
+G+ DKT R+WD ++ + + V S+ F+ D R + + +++T +
Sbjct: 330 TGNQDKTCRIWDTRKLSESVAVLKGNLGAVRSIRFTSDGRYVAMAEPADFVHIYDTKSGY 389
Query: 446 KYTIQDDGHSDWVSCVRFSPN 508
K + D + +S + FSP+
Sbjct: 390 KKEQEIDFFGE-ISGISFSPD 409
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = +2
Query: 296 LWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYTIQDDGHS 475
L D + G+T + H + A+ + +G++DKT ++W+T + G+
Sbjct: 297 LVDTSNGQTIGTLKGHLDYSFASAWHPNGVTFATGNQDKTCRIWDTRKLSESVAVLKGNL 356
Query: 476 DWVSCVRFS 502
V +RF+
Sbjct: 357 GAVRSIRFT 365
>At4g34280.1 68417.m04873 transducin family protein / WD-40 repeat
family protein similar to TUPA (GI:11066216) [Emericella
nidulans]; similar to damage-specific DNA binding
protein 2, Homo sapiens ,PIR2:I38909; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies,1
weak)|19797453|gb|AU229277.1|AU229277
Length = 783
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRF-EDHTKDVLSVAFSVDNRQIVSGSRDKTIK 421
+ S+DK ++LWDL + + TK + V FS D+R +++ + D ++
Sbjct: 601 TSSFDKDVKLWDLRQEPSRPCYTASSTKGNVMVCFSPDDRYLLASAVDNEVR 652
>At4g29380.1 68417.m04197 protein kinase family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat; contains Pfam PF00069: Protein kinase domain;
contains PF02985: HEAT repeat; similar to adaptor protein
(GI:1817584) [Homo sapiens]; similar to VPS15 protein
(GI:6103009) [Pichia pastoris]
Length = 1494
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 314 GKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNT 433
G ++H V +A S D+ VS S D T+K+W++
Sbjct: 1071 GVLVAHLQEHRSAVNDIATSSDHSFFVSASDDSTVKVWDS 1110
>At3g13290.1 68416.m01673 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1322
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +3
Query: 51 LRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDENNYGIPQKRLYG 215
LR RGH+ VT +A + ++ S S D + VWK++ E + G Q ++ G
Sbjct: 213 LRSLFRGHSQRVTDMAFFAEDVHLLASVSLDGKVFVWKIS--EGSEGDEQSQITG 265
>At1g15850.1 68414.m01902 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
mRNA-associated protein mrnp 41 (SP:P78406) [Homo
sapiens]; similar to mitotic checkpoint protein
GI:9294423 from [Arabidopsis thaliana]
Length = 140
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 269 SGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIK 421
+G DK ++W L +G H +A+ +V+GS DKT+K
Sbjct: 90 TGGCDKQAKMWPLLSGAQPSTVAMHDAPFNQIAWIPGMNLLVTGSWDKTLK 140
>At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4
WD-40 repeats (PF00400);low similarity to
photomorphogenesis repressor (COP1) GI:2702280
[Arabidopsis thaliana] and COP1 GI:11127996 [Ipomoea
nil]
Length = 343
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRR-FED---HTKDVLSVAFSV-DNRQIVSGSRDKTIK 421
N +GS D WD+ R F++ HT V ++ + D I +GS D+T++
Sbjct: 177 NLVYTGSDDCKFSCWDIRDSPADNRVFQNSKVHTMGVCCISSNPSDPYSIFTGSYDETLR 236
Query: 422 LWNT 433
+W+T
Sbjct: 237 VWDT 240
>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
protein [Arabidopsis thaliana] GI:21743571; contains
Pfam profile PF00730: HhH-GPD superfamily base excision
DNA repair protein
Length = 1729
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTI 418
D+T R+W+L GK + D KD + + R++ G D I
Sbjct: 702 DETTRIWNLLMGKGDEKEGDEEKDKKKEKWWEEERRVFRGRADSFI 747
>At2g25420.1 68415.m03045 transducin family protein / WD-40 repeat
family protein contains Pfam PF00400: WD domain, G-beta
repeat (3 repeats)
Length = 717
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +2
Query: 281 DKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTLAECKYT 454
D ++ + L++ K + E H + + +AFS +VS D + LW+T + K T
Sbjct: 490 DGSIFIHCLSSRKVKEKLEGHDQKITCLAFSRCFNVLVSSDSDGKLCLWSTKSWVKLT 547
>At1g19750.1 68414.m02469 transducin family protein / WD-40 repeat
family protein similar to Cockayne syndrome
complementaion group A proteins (GI:18077663)[Mus
musculus] and (SP:Q13216)[Homo sapiens]; confirmed by
full-length cDNA GI:15982896
Length = 450
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/49 (22%), Positives = 29/49 (59%)
Frame = +2
Query: 284 KTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
KT++ + + +G+TT H + V + F+ +++++ + D+ I +W+
Sbjct: 379 KTVKGFGMWSGRTTLMLRGHYESVNTCCFNSNDQELYTSGADRQIIVWS 427
>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
family protein similar to Sec31p (GI:13928450) {Oryza
sativa}
Length = 969
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 12 LFKPFSKMSETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKL 167
L+ P S S + L H G V + N K P+ + S + D T+ +W L
Sbjct: 94 LWNPISSESGEIAHVRDLSKHKGPVRGLEFNVKSPNQLASGADDGTVCIWDL 145
>At5g60050.1 68418.m07530 PRLI-interacting factor-related contains
weak similarity to PRLI-interacting factor G
(GI:11139264) [Arabidopsis thaliana]
Length = 499
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 138 RDKTLIVWKLTRDENNYGIPQKRLYGHSH-FISDVVLSSDVIT 263
R+ ++++KL R+E +Y + + LYG H ++ +VL +T
Sbjct: 271 REMKVLIFKLVREEADYDVSRDTLYGLCHRCLTSLVLCLSEVT 313
>At1g15470.1 68414.m01860 transducin family protein / WD-40 repeat
family protein Strong similarity to gb AF096285
serine-threonine kinase receptor-associated protein from
Mus musculus and contains 5 PF|00400 WD40, G-beta repeat
domains. EST gb|F14050 comes from this gene
Length = 333
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/59 (30%), Positives = 25/59 (42%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWNTL 436
+ +S S D L + G FE H V S + + + S S D T K+WN L
Sbjct: 28 FLISASKDSNPMLRNGETGDWIGTFEGHKGAVWSCSLDKNAIRAASASADFTAKIWNAL 86
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/57 (24%), Positives = 25/57 (43%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW 427
N ++G D + +D G+ + H V V ++ SGS D T+++W
Sbjct: 236 NTFIAGGEDMWVHRFDFQTGEEIGCNKGHHGPVHCVRYAPGGESYTSGSEDGTVRIW 292
>At5g05970.1 68418.m00661 transducin family protein / WD-40 repeat
family protein contains similarity to regulatory protein
Nedd1; contains Pfam PF00400: WD domain, G-beta repeat
(6 copies, 2 weak)|19804256|gb|AV785466.1|AV785466
Length = 781
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/48 (22%), Positives = 23/48 (47%)
Frame = +2
Query: 260 YALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGS 403
Y SG + +++WDL ++ + HT + V ++ + + S S
Sbjct: 107 YICSGGTGQIVKIWDLQRKLCIKKLKGHTSTITGVMYNCKDEHLASVS 154
>At1g78070.2 68414.m09098 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 447
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 296 LWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
L D +GK E H S A+ + + + +G++D T +LW+
Sbjct: 303 LADTGSGKVIHGLEGHLDYSFSSAWHPNGQILATGNQDTTCRLWD 347
>At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/57 (21%), Positives = 25/57 (43%)
Frame = +2
Query: 257 NYALSGSWDKTLRLWDLAAGKTTRRFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW 427
N G D ++ ++++ + + + H K + +AFS +VS D + W
Sbjct: 886 NIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFW 942
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 28.3 bits (60), Expect = 4.8
Identities = 9/31 (29%), Positives = 22/31 (70%)
Frame = +2
Query: 335 EDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW 427
+ H + +V++S D++++++ S DK+ K+W
Sbjct: 93 DGHKGSIYAVSWSPDSKRVLTVSADKSAKVW 123
>At1g27470.1 68414.m03349 transducin-related / WD-40 repeat
protein-related contains 6 WD-40 repeats (PF00400) (2
weak); related to KIAA1988 protein (GI:18916910) [Homo
sapiens]
Length = 810
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 344 TKDVLSVAFSVDNRQIVSGSRDKTIKLWN 430
T LSV +S D ++I SGS D I+ W+
Sbjct: 198 TGRALSVTWSADAQRIFSGSSDGLIRCWD 226
>At4g01860.2 68417.m00244 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 329 RFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW 427
R H + + +S+D +IVS S D++ ++W
Sbjct: 230 RLTGHEGSIFRIVWSLDGSKIVSVSDDRSARIW 262
>At4g01860.1 68417.m00243 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 329 RFEDHTKDVLSVAFSVDNRQIVSGSRDKTIKLW 427
R H + + +S+D +IVS S D++ ++W
Sbjct: 230 RLTGHEGSIFRIVWSLDGSKIVSVSDDRSARIW 262
>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1102
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +3
Query: 12 LFKPFSKMSETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDE 179
L KP S+ S L+G+ G ++ I+ N K ++ S+S + T ++W L + +
Sbjct: 152 LLKP-SEPSHFPLLKGSGSATQGEISFISWNRKVQQILASTSYNGTTVIWDLRKQK 206
>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1104
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +3
Query: 12 LFKPFSKMSETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVWKLTRDE 179
L KP S+ S L+G+ G ++ I+ N K ++ S+S + T ++W L + +
Sbjct: 152 LLKP-SEPSHFPLLKGSGSATQGEISFISWNRKVQQILASTSYNGTTVIWDLRKQK 206
>At2g40060.1 68415.m04922 expressed protein
Length = 258
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -2
Query: 582 SLQFSEMPDLDSSVPTT---GYNNGVGILGENLTHDTQSLCPSSWM 454
SLQ + D + P++ Y+NG GI G N HD L P S M
Sbjct: 38 SLQVEDSVDDVFAAPSSDYGAYSNGDGIFGSNGDHDGPILPPPSEM 83
>At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 (4
significant) WD-40 repeats (PF0400); identical to WD-40
repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 507
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +3
Query: 36 SETLKLRGTLRGHNGWVTQIATNPKYPDMILSSSRDKTLIVW 161
S T+ RG GH V +A +P S D LI+W
Sbjct: 279 SPTVGPRGVYHGHEDTVEDVAFSPTSAQEFCSVGDDSCLILW 320
>At4g07410.1 68417.m01136 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400) (2
weak); similar to Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 815
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 356 LSVAFSVDNRQIVSGSRDKTIKLWN 430
LSV +S D ++I SGS D I+ W+
Sbjct: 202 LSVTWSPDAKRIFSGSSDGLIRCWD 226
>At4g03970.1 68417.m00561 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At5g28170, At1g35110,
At1g44880, At3g42530, At4g19320, At5g36020, At3g43010,
At2g10350
Length = 1043
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 105 PKYPDMILSSSRDKTLIVWK-LTRDENNYGIPQ 200
P D++L S KT+++WK LT + +PQ
Sbjct: 220 PGLLDLVLDDSTSKTILLWKRLTHPKQVISLPQ 252
>At3g27670.1 68416.m03455 expressed protein
Length = 1841
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = -1
Query: 370 EGYREYILSMVLESSGSLACSEIPQTQSLVPRTGKCVITSLDSTTSEMKCE 218
E +R + S+ L + SLA + ++ + R + I S+D+TT E+ +
Sbjct: 869 EAFRVVVKSLQLSRNISLALISLQSLKAFMRRWMRANILSIDATTKELSSD 919
>At1g78690.1 68414.m09172 phospholipid/glycerol acyltransferase
family protein similar to SP|Q16635 Tafazzin from Homo
sapiens; contains Pfam profile: PF01553 Acyltransferase
Length = 284
Score = 27.5 bits (58), Expect = 8.4
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Frame = -2
Query: 609 PE*PKWLILSLQFSEMPDLDSSVPTTG----YNNGVGILGENLTHDTQSLCPSSWMVYLH 442
PE +W++ + + S + TG G GI EN+ Q L SW+
Sbjct: 88 PELARWVLAAEDICFRNPIFSYIFRTGKCIPITRGGGIYQENMNEALQRLKDGSWLHTFP 147
Query: 441 SARVFQSLIVLSR 403
+VFQ + + R
Sbjct: 148 EGKVFQDDVPIRR 160
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,491,336
Number of Sequences: 28952
Number of extensions: 339233
Number of successful extensions: 2028
Number of sequences better than 10.0: 210
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1881
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -