Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30162
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   1.9  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    27   3.4  
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...    27   3.4  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   3.4  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    25   7.8  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      25   7.8  

>SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 213 LLRYTPTRRWTVYSKSMEPCSLNLCEQACEVQGESMWCS 329
           +L Y     W      +  C+  +C+QA E QG S W S
Sbjct: 69  ILAYPNDFFWRPKKPRVRICNSWMCQQAAEEQGNSNWDS 107


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -3

Query: 553 KWKRFCNSQRYPWDTFLPSLASESGGEHSQWKLPGSLTQRCSHPPLFVAHSST 395
           +W+   +S       FLP+ +S   G+ +   LP   ++  S   +F+++ ST
Sbjct: 111 RWRSSKSSSSQCSSPFLPTSSSNGHGDDASLNLPDKKSRPSSQSSIFLSNWST 163


>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 530 AIAEPLPLVRASSRCYAPCDTVTWL-TRKVRQLNDQLHATHAALKKLFG 673
           A+AEPL LVR S       D + ++  R  R+LN +LHA    L  + G
Sbjct: 6   AVAEPLDLVRLS------LDEIVYVKLRGDRELNGRLHAYDEHLNMVLG 48


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 480 PLSLASDGKNVSHGYRWLLQNLFHLC 557
           P S++ D  +  H   W+L NLF  C
Sbjct: 853 PFSVSRDPISFYHPLHWMLSNLFSYC 878


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 550 WKRFCNSQRYPWDT 509
           WKR+C  + Y W+T
Sbjct: 336 WKRWCRVKEYSWNT 349


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 553 KWKRFCNSQRYPWDTFLPSLASESG 479
           K +RF N    PWD  LP L    G
Sbjct: 300 KLQRFKNEIHGPWDIALPKLGPSKG 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,912,744
Number of Sequences: 5004
Number of extensions: 61348
Number of successful extensions: 169
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)