Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30162
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.90 
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    23   3.6  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   3.6  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   8.4  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   8.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.4  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 462 GSFQDH*RSVAHTHRCSSHTRLHQHNTAAPAWSSFP 355
           G    H  +  H H   + T  HQH+T   A SS+P
Sbjct: 420 GHGHSHIHATPHHHHSHAATPHHQHSTPL-AHSSYP 454


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 186 VPHATRLPRSQHQVRRASRCAAIYNVD 106
           VP+ +RL +S+  +     C  I N+D
Sbjct: 97  VPNTSRLDKSEISLATKQACGFIDNID 123


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -2

Query: 218 QQCSLTHCTSASPTRHVCRDRNTRSVGHRAVL 123
           Q C    C+ AS  RHV      R   +R V+
Sbjct: 9   QLCGKVLCSKASLKRHVADKHAERQEEYRCVI 40


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 536 AEPLPLVRASSRCYAPCDTVTWLTRKVRQLNDQLHATHAALK 661
           AEP P+ +A S+C+    T   + RK     D    T   L+
Sbjct: 699 AEPQPIGKALSKCHNRNVTTCNMFRKTNLSGDSSSGTTLLLE 740


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -1

Query: 342  TQGSRNTTYSLP 307
            TQ SRN TYS P
Sbjct: 1297 TQPSRNNTYSTP 1308


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 197 NA*GCTAAIHTNTSLDGVFQIN 262
           N+ G ++ I TNT +D   QIN
Sbjct: 296 NSQGPSSVIDTNTGVDYFTQIN 317


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 347 PEPRVAGTPHTLSLHFACLLTQVQTARLH 261
           P      TP TL+L    LL +++   LH
Sbjct: 26  PASPTLSTPPTLNLMEQILLAKIEKQNLH 54


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 56  TTTTADTERRNRTSLTPST 112
           TTTT  T     T+ TP+T
Sbjct: 662 TTTTTTTTTTTTTTTTPNT 680


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,849
Number of Sequences: 438
Number of extensions: 4130
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)