Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30161
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)             101   8e-22
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)              92   5e-19
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)         88   8e-18
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)              88   8e-18
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         83   2e-16
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)               79   4e-15
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)              79   5e-15
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)          75   6e-14
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)         63   2e-10
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         51   8e-07
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   9e-05
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.057
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)         35   0.076
SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2)                     35   0.076
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)            32   0.53 
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score =  101 bits (241), Expect = 8e-22
 Identities = 46/80 (57%), Positives = 52/80 (65%)
 Frame = +3

Query: 267 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRS 446
           G +++GLFG T PKT  NF  LA K +G GYK S FHRVIKNFMIQ             S
Sbjct: 40  GRVILGLFGDTAPKTVANFVALADKEQGFGYKDSIFHRVIKNFMIQGGDFTNKDGTGGYS 99

Query: 447 IYGERFEDENFKLKHYGAGW 506
           IYG+ F+DENF LKHYG GW
Sbjct: 100 IYGKYFDDENFNLKHYGPGW 119



 Score = 91.1 bits (216), Expect = 8e-19
 Identities = 41/62 (66%), Positives = 50/62 (80%)
 Frame = +2

Query: 500 WLVSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKIEMTVTGANDRPVK 679
           WL  MANAGK+TNGSQF+ITT+KT WLDG H  FGKVLEGMDVV++IE T    +D+P+ 
Sbjct: 119 WLC-MANAGKNTNGSQFYITTIKTSWLDGSHTCFGKVLEGMDVVRRIENTRVDTHDKPLD 177

Query: 680 DV 685
           +V
Sbjct: 178 EV 179


>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 91.9 bits (218), Expect = 5e-19
 Identities = 44/56 (78%), Positives = 47/56 (83%)
 Frame = +2

Query: 512 MANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKIEMTVTGANDRPVK 679
           MANAGKDTNGSQFFITTVKT WLDG+HVVFGKVLEGMDVV+K+E  V      PVK
Sbjct: 1   MANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKLE-NVNVKGSTPVK 55


>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
          Length = 99

 Score = 87.8 bits (208), Expect = 8e-18
 Identities = 40/71 (56%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
 Frame = +2

Query: 500 WLVSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKIEMTVTG-ANDRPV 676
           + VSMANAG +TNGSQFFIT V TPWLD +H VFG+V++GMDV Q+I +  T   ND+P 
Sbjct: 28  YTVSMANAGPNTNGSQFFITVVPTPWLDNKHTVFGRVVKGMDVAQQISLVKTNPKNDQPY 87

Query: 677 KDVVYLTRKLK 709
           +D+  +   LK
Sbjct: 88  EDIKIINITLK 98


>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 87.8 bits (208), Expect = 8e-18
 Identities = 40/43 (93%), Positives = 42/43 (97%)
 Frame = +2

Query: 500 WLVSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDV 628
           WL SMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVL+GM+V
Sbjct: 138 WL-SMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLKGMEV 179



 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 36/73 (49%), Positives = 44/73 (60%)
 Frame = +3

Query: 336 QKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRSIYGERFEDENFKLKHYGAGWFLW 515
           +  +G GYK S FHRVI++FMIQ            +SIYG++F DENFKL+HYGAG   W
Sbjct: 82  ESQKGFGYKNSIFHRVIQDFMIQGGDFTKGDGTGGKSIYGQKFADENFKLQHYGAG---W 138

Query: 516 LMQAKTQMDLNFS 554
           L  A    D N S
Sbjct: 139 LSMANAGKDTNGS 151


>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 38/49 (77%), Positives = 45/49 (91%)
 Frame = +2

Query: 503 LVSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKIEMT 649
           L+SMAN+G +TNGSQFFITTV TP LDGRHVVFGKVL+GMDVV+++E T
Sbjct: 194 LLSMANSGPNTNGSQFFITTVPTPHLDGRHVVFGKVLKGMDVVRELEAT 242


>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 40/79 (50%), Positives = 45/79 (56%)
 Frame = +3

Query: 267 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRS 446
           G IV+ L    VP T ENF  L    +G GYKGS FHR+I  FM Q            +S
Sbjct: 151 GRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQFMCQGGDFTKHNGTGGKS 210

Query: 447 IYGERFEDENFKLKHYGAG 503
           IYG +FEDENF LKH GAG
Sbjct: 211 IYGAKFEDENFVLKHTGAG 229



 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 37/62 (59%), Positives = 48/62 (77%)
 Frame = +2

Query: 503 LVSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKIEMTVTGANDRPVKD 682
           ++SMAN+G +TNGSQFF+TT KT WLDG+HVVFG V+EG DVV+K+E  V   + +  K 
Sbjct: 230 VLSMANSGPNTNGSQFFLTTEKTDWLDGKHVVFGNVIEGFDVVRKME-AVGSQSGKASKK 288

Query: 683 VV 688
           VV
Sbjct: 289 VV 290


>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 36/62 (58%), Positives = 45/62 (72%)
 Frame = +2

Query: 503 LVSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKIEMTVTGANDRPVKD 682
           ++SMANAG  TNGSQFF+ T KT WLDG+HVVFG V +GMDVV+KIE   + +     K 
Sbjct: 96  ILSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKIEKVGSDSGKTSKKV 155

Query: 683 VV 688
           V+
Sbjct: 156 VI 157



 Score = 78.2 bits (184), Expect = 6e-15
 Identities = 40/79 (50%), Positives = 44/79 (55%)
 Frame = +3

Query: 267 GTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRS 446
           G IV+ L    VPKT ENF  L    +G GYKGS FHRVI  FM Q            +S
Sbjct: 17  GRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPGFMCQGGDFTRGDGTGGKS 76

Query: 447 IYGERFEDENFKLKHYGAG 503
           IYG +F DENF LKH G G
Sbjct: 77  IYGAKFADENFNLKHTGPG 95


>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
          Length = 49

 Score = 74.9 bits (176), Expect = 6e-14
 Identities = 32/46 (69%), Positives = 39/46 (84%)
 Frame = +2

Query: 503 LVSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKI 640
           ++SMANAG  TNGSQFF+ T KT WLDG+HVVFG V +GMDVV+K+
Sbjct: 2   ILSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKM 47


>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
          Length = 145

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 28/57 (49%), Positives = 41/57 (71%)
 Frame = +2

Query: 503 LVSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKIEMTVTGANDRP 673
           +V MAN G+ TNGSQF+IT    PW+D ++V FG+V+EG++V+  +E   T  N+RP
Sbjct: 71  VVGMANKGRHTNGSQFYITLQPAPWMDTKYVAFGQVIEGLNVLDVLEGQET-FNERP 126


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 29/61 (47%), Positives = 38/61 (62%)
 Frame = +2

Query: 503 LVSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVLEGMDVVQKIEMTVTGANDRPVKD 682
           L+SMAN G +TNGSQFFI           HVVFG V++G ++V++IE   T   +RP  D
Sbjct: 51  LLSMANRGPNTNGSQFFII----------HVVFGHVIQGEELVRQIESLPTNEKNRPNAD 100

Query: 683 V 685
           V
Sbjct: 101 V 101


>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 21/36 (58%), Positives = 26/36 (72%)
 Frame = +2

Query: 506 VSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVL 613
           VSMAN G ++NGSQFFI   K P LD ++ +FGK L
Sbjct: 307 VSMANNGPNSNGSQFFICYGKQPHLDMKYTMFGKYL 342


>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 35.1 bits (77), Expect = 0.057
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
 Frame = +2

Query: 527 KDTNGSQFFITTVKTPWLDGR-----HVVFGKVLEGMDVVQKIEMTVT 655
           +D+  SQFFI      +LD       + VFGKV++GMDVV KI    T
Sbjct: 115 RDSATSQFFINHKDNAFLDHGSRDFGYAVFGKVVKGMDVVDKIAQVPT 162



 Score = 34.3 bits (75), Expect = 0.10
 Identities = 21/48 (43%), Positives = 27/48 (56%)
 Frame = +3

Query: 261 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQ 404
           ++G I I L     P +T NF  LA    G  Y G++FHRVI  FM+Q
Sbjct: 31  SLGEIEIELDADKAPISTANF--LAYVDSGY-YAGTQFHRVIPGFMVQ 75


>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
          Length = 454

 Score = 34.7 bits (76), Expect = 0.076
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = +3

Query: 261 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIK 389
           ++G I I L+GK  PK   NF QL    EG  Y  + FHR++K
Sbjct: 11  SVGDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIVK 50


>SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2)
          Length = 175

 Score = 34.7 bits (76), Expect = 0.076
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +2

Query: 590 HVVFGKVLEGMDVVQKIEMTVTGANDRPVKDV 685
           HVVFG V++G ++V++IE   T   +RP  DV
Sbjct: 3   HVVFGHVIQGEELVRQIESLPTNEKNRPNADV 34


>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
          Length = 48

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
 Frame = +3

Query: 267 GTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSKFHR 380
           G ++  LF   VPKT ENF  L    +G G        YKG  FHR
Sbjct: 2   GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 687  TTSLTGRSFAPVTVISIFCTTSIP-SKTLPKTTCLPSNQGV 568
            TTS+   + AP T  S+  TT+ P + TLPKTT  P    V
Sbjct: 2835 TTSVPKTTAAPETT-SVPKTTAAPETTTLPKTTAAPETTSV 2874


>SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 224 VTLGPLGISSDLALAMNNKIPKAIVRVPMIKTSL 123
           VTL PL +S+    ++N +   A+VRV  I  SL
Sbjct: 38  VTLSPLQVSAKTGASLNGRAEVAMVRVSPILASL 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,244,510
Number of Sequences: 59808
Number of extensions: 430410
Number of successful extensions: 901
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)