Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30160
(719 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0038 - 312152-312748,312930-313362,313572-314440,314535-31... 40 0.002
11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-29... 40 0.002
07_03_1774 + 29425486-29425831,29426018-29426235,29426337-294271... 36 0.043
03_02_0665 - 10268959-10269148,10269344-10269936,10270572-102710... 32 0.53
03_02_1027 + 13422698-13422914,13424899-13424959,13425366-134254... 30 2.1
10_08_0684 - 19870715-19872994 28 6.5
11_06_0120 - 20324794-20325204,20325416-20325545,20326172-203262... 28 8.6
>12_01_0038 - 312152-312748,312930-313362,313572-314440,314535-314584,
314589-315192,315674-315718,316100-316317,317020-317332,
318681-318716
Length = 1054
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/62 (35%), Positives = 37/62 (59%)
Frame = -2
Query: 685 LWDRFEVKGEITLQQFLDHFKNEHKLEITMLSQGVCMLYSFFMPKAKRLERLNLPMSEVS 506
+WDR+ + G ITL++ LD K E L +S G +LY+ P+ K ERL+ + +V+
Sbjct: 959 VWDRWTITGNITLRELLDWLK-EKGLNAYSISCGTSLLYNSMFPRHK--ERLDKKVVDVA 1015
Query: 505 QK 500
++
Sbjct: 1016 RE 1017
Score = 32.3 bits (70), Expect = 0.40
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 503 KVSKKKLEPHVNALVFELCCNDDDGNDVEVPYV 405
+V+K ++ P+ L + C DDD NDV++P V
Sbjct: 1017 EVAKVEVPPYRRHLDVVVACEDDDDNDVDIPLV 1049
>11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-292513,
295071-295646,295828-296260,296470-297338,297433-298227,
298709-298753,299135-299352,300055-300364,302715-302984
Length = 1331
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/62 (35%), Positives = 37/62 (59%)
Frame = -2
Query: 685 LWDRFEVKGEITLQQFLDHFKNEHKLEITMLSQGVCMLYSFFMPKAKRLERLNLPMSEVS 506
+WDR+ + G ITL++ LD K E L +S G +LY+ P+ K ERL+ + +V+
Sbjct: 1083 VWDRWTITGNITLRELLDWLK-EKGLNAYSISCGTSLLYNSMFPRHK--ERLDKKVVDVA 1139
Query: 505 QK 500
++
Sbjct: 1140 RE 1141
Score = 31.1 bits (67), Expect = 0.92
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -1
Query: 503 KVSKKKLEPHVNALVFELCCNDDDGNDVEVP 411
+V+K ++ P+ L + C DDD NDV++P
Sbjct: 1141 EVAKVEVPPYRRHLDVVVACEDDDDNDVDIP 1171
>07_03_1774 + 29425486-29425831,29426018-29426235,29426337-29427131,
29427206-29428074,29428317-29428749,29429263-29429859
Length = 1085
Score = 35.5 bits (78), Expect = 0.043
Identities = 19/62 (30%), Positives = 36/62 (58%)
Frame = -2
Query: 685 LWDRFEVKGEITLQQFLDHFKNEHKLEITMLSQGVCMLYSFFMPKAKRLERLNLPMSEVS 506
+WDR+ +KG +T+ + L F ++ L +S G +LY+ A+ ERLN + +V+
Sbjct: 990 VWDRWSIKGNLTVAELLQWF-SDKGLTAYSISCGTSLLYNNMF--ARHKERLNKKVVDVA 1046
Query: 505 QK 500
++
Sbjct: 1047 RE 1048
Score = 31.1 bits (67), Expect = 0.92
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 509 VTKVSKKKLEPHVNALVFELCCNDDDGNDVEVPYV 405
V KV + H++ + C DDDGND+++P V
Sbjct: 1049 VAKVDVPEYRKHLDLVA---ACEDDDGNDIDIPLV 1080
>03_02_0665 - 10268959-10269148,10269344-10269936,10270572-10271004,
10271172-10272040,10272121-10272915,10273612-10273829,
10274931-10275230,10276834-10277161
Length = 1241
Score = 31.9 bits (69), Expect = 0.53
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 509 VTKVSKKKLEPHVNALVFELCCNDDDGNDVEVPYV 405
V KV H++ +V C DDDGNDV++P +
Sbjct: 1143 VAKVDVPAYRRHLDVVV---ACEDDDGNDVDIPLI 1174
>03_02_1027 +
13422698-13422914,13424899-13424959,13425366-13425464,
13428959-13429361
Length = 259
Score = 29.9 bits (64), Expect = 2.1
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 552 KPSGWND*TCQCRRCHKSVQEEVGTACECIS 460
+P W+D +CRR + EVG +C++
Sbjct: 176 EPLDWSDMMAKCRRLFEKTSREVGAQMDCLT 206
>10_08_0684 - 19870715-19872994
Length = 759
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 560 HAQSQAAGT-IEPANVGGVTKVSKKKLEPHVNALVFELC 447
H S AAG +E ANV G + + PH + ++++C
Sbjct: 219 HTASTAAGNFVENANVRGNADGTASGMAPHAHLAIYKVC 257
>11_06_0120 -
20324794-20325204,20325416-20325545,20326172-20326255,
20326584-20326823,20327418-20327498,20327761-20328113
Length = 432
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = -3
Query: 654 LHYSNF*ITSKTNTSWRSPCCLKVCACFIRSSCPKPSGW 538
+ Y + +K N W P C +C C S C GW
Sbjct: 252 MRYGENVLEAKKNPDWICPVCRGICNC---SICRTKKGW 287
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,378,361
Number of Sequences: 37544
Number of extensions: 311357
Number of successful extensions: 654
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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