Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30160
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p...    65   4e-11
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p...    65   4e-11
AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical...    28   5.8  

>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
            protein C47E12.5b protein.
          Length = 1028

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 29/68 (42%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
 Frame = -2

Query: 685  LWDRFEVKGEITLQQFLDHFKNEHK-LEITMLSQGVCMLYSFFMPKAKRLERLNLPMSEV 509
            LWDR +V+G +TLQ+F+D+ +N+    E++MLS G C+L+SFFM   K+ ERL   +  V
Sbjct: 930  LWDRIDVQGPLTLQEFIDNVQNQTGGCEVSMLSAGACLLFSFFMNAGKKQERLKTEVKAV 989

Query: 508  SQKCPRRS 485
             ++  ++S
Sbjct: 990  YEELLKKS 997



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 19/33 (57%), Positives = 24/33 (72%)
 Frame = -1

Query: 494  KKKLEPHVNALVFELCCNDDDGNDVEVPYVKYT 396
            KK L P V+ALV E   +D DG DVEVPY++Y+
Sbjct: 995  KKSLHPSVHALVLEPMMSDPDGEDVEVPYIRYS 1027


>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
            protein C47E12.5a protein.
          Length = 1113

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 29/68 (42%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
 Frame = -2

Query: 685  LWDRFEVKGEITLQQFLDHFKNEHK-LEITMLSQGVCMLYSFFMPKAKRLERLNLPMSEV 509
            LWDR +V+G +TLQ+F+D+ +N+    E++MLS G C+L+SFFM   K+ ERL   +  V
Sbjct: 1015 LWDRIDVQGPLTLQEFIDNVQNQTGGCEVSMLSAGACLLFSFFMNAGKKQERLKTEVKAV 1074

Query: 508  SQKCPRRS 485
             ++  ++S
Sbjct: 1075 YEELLKKS 1082



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 19/33 (57%), Positives = 24/33 (72%)
 Frame = -1

Query: 494  KKKLEPHVNALVFELCCNDDDGNDVEVPYVKYT 396
            KK L P V+ALV E   +D DG DVEVPY++Y+
Sbjct: 1080 KKSLHPSVHALVLEPMMSDPDGEDVEVPYIRYS 1112


>AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical
           protein B0238.12 protein.
          Length = 166

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 409 YGTSTSFPSSSLQHNSKTNAF-TCGSN 486
           +G+ST FPS S Q   +   F TCGS+
Sbjct: 99  FGSSTPFPSQSPQRCGRNETFRTCGSS 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,575,244
Number of Sequences: 27780
Number of extensions: 293216
Number of successful extensions: 672
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)