Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30160
         (719 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g30110.1 68415.m03664 ubiquitin activating enzyme 1 (UBA1) E1...    34   0.11 
At2g05645.1 68415.m00604 hypothetical protein                          31   1.0  
At4g37110.1 68417.m05256 expressed protein                             29   4.1  
At1g78680.1 68414.m09171 gamma-glutamyl hydrolase (GGH1) / gamma...    28   5.4  
At1g32190.1 68414.m03959 expressed protein                             28   5.4  

>At2g30110.1 68415.m03664 ubiquitin activating enzyme 1 (UBA1) E1;
            identical to GB:U80808
          Length = 1080

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -1

Query: 500  VSKKKLEPHVNALVFELCCNDDDGNDVEVPYV 405
            V+K +L P+ N L   + C D+D NDV++P V
Sbjct: 1044 VAKVELPPYRNHLDVVVACEDEDDNDVDIPLV 1075



 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = -2

Query: 685  LWDRFEVKGEITLQQFLDHFKNEHKLEITMLSQGVCMLY-SFFMPKAKRLER 533
            +WDR+ +KG  TL++ L   +++  L    +S G C+L+ S F    +R+++
Sbjct: 985  VWDRWVLKGNPTLREVLQWLEDK-GLSAYSISCGSCLLFNSMFTRHKERMDK 1035


>At2g05645.1 68415.m00604 hypothetical protein
          Length = 204

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 7/33 (21%)
 Frame = +3

Query: 642 CCNVISPLTSNLSHKWSTYS---PC----RCWS 719
           CCNV+SPL  N SH +   S   PC     CWS
Sbjct: 43  CCNVVSPLLLNRSHFFQDLSWSNPCILALACWS 75


>At4g37110.1 68417.m05256 expressed protein
          Length = 417

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/51 (27%), Positives = 19/51 (37%)
 Frame = -3

Query: 654 LHYSNF*ITSKTNTSWRSPCCLKVCACFIRSSCPKPSGWND*TCQCRRCHK 502
           + Y    + +  N  W  P C  +C C   S C    GW       R+ HK
Sbjct: 215 MRYGEHVLEALENPDWICPVCRDICNC---SFCRTKKGWLPTGAAYRKIHK 262


>At1g78680.1 68414.m09171 gamma-glutamyl hydrolase (GGH1) /
           gamma-Glu-X carboxypeptidase / conjugase identical to
           SP|O65355 Gamma-glutamyl hydrolase precursor (EC
           3.4.19.9) (Gamma-Glu-X carboxypeptidase) (Conjugase)
           (GH) {Arabidopsis thaliana}
          Length = 347

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 385 D*GRVYFTYGTSTSFPSSSLQHNSKTNAFTCGSN 486
           D G+VY +   ST +P +  Q + + NAF  GS+
Sbjct: 246 DNGKVYVSTVQSTKYPVTGFQWHPEKNAFEWGSS 279


>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = -3

Query: 603 SPCC--LKVCACFIRSSCPKPSGWND*TCQCRRCHKS 499
           S CC   K  +CF +  CPK S W    C    C +S
Sbjct: 351 SCCCPTFKCSSCFGKPKCPKCSCWKCLKCPDTECCRS 387


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,481,028
Number of Sequences: 28952
Number of extensions: 260180
Number of successful extensions: 588
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)