Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30156
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    29   0.64 
SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit |Sc...    27   2.6  
SPBC11C11.02 |imp2||contractile ring protein Imp2|Schizosaccharo...    26   4.5  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    26   4.5  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    26   6.0  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    25   7.9  

>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +3

Query: 462 NTIQFYDTQPGAARPDLLLGNSRMHFLFTRFILASLV--YMFVTDSFRR 602
           N  QFY T P   + D+L G  R H  F   +  S      FV ++FRR
Sbjct: 257 NLNQFYLTVPLTEKLDILFGFIRTHLKFKTIVFLSSCKQVRFVYETFRR 305


>SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 138

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
 Frame = -3

Query: 548 CKKEMHSRITQQQIRPSGARLRVIKL-DSIQCLHYTFEMLTLESGPNYAYTSFKQIHELD 372
           CKKE+H  I ++Q+  +     +I L DSI  L  ++  L   SG       F+ + + +
Sbjct: 21  CKKELHEMIEKRQLLETS----LIGLEDSIYRLEGSY--LEKTSGTGNIIRGFEGLLKNN 74

Query: 371 ALN*R---SYSLSIILFTNCDYDADRYRHPAY 285
           A N R    YS S  LF+     +   R PAY
Sbjct: 75  ASNLRRRADYSESDRLFSLSSLSSPHTRSPAY 106


>SPBC11C11.02 |imp2||contractile ring protein
           Imp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/82 (19%), Positives = 32/82 (39%)
 Frame = -1

Query: 598 LKESVTNIYTSEANIKRVKRKCIRELPNNRSGRAAPGCVS*NWIVFNVYIIHSRC*HLRV 419
           + E + + Y   ANI+    K + +L          GC+  +  V    + +    HL++
Sbjct: 43  INEELRSFYHERANIEEDYAKRMAKLSRTTFSSLETGCLKESVQVMKAEVDNMAKSHLQI 102

Query: 418 DLTTPTQVSNRYTNWTH*ISDR 353
                  V N +T +   + D+
Sbjct: 103 SQLLQDDVENAFTRYAASLKDK 124


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 122 GGRAHSPPGVNWLLEPIDIYN 184
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 69  EPVKITYSCSYRDPVYE 19
           +P KITYS  Y D +YE
Sbjct: 327 QPYKITYSSDYFDKLYE 343


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -3

Query: 410 YAYTSFKQIHELDALN*RSYSLSIILFTNCDYDADR 303
           Y    F   +    L    + L+ +L   CDYDAD+
Sbjct: 312 YVVNLFDTYYATKVLGFEGHGLAFLLQKYCDYDADK 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,848,940
Number of Sequences: 5004
Number of extensions: 57670
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)