Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30156
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0411 + 3168593-3168829,3169217-3170209                           29   2.7  
01_02_0069 - 10813467-10813475,10813476-10813564,10813865-108139...    29   4.7  
09_02_0456 - 9525067-9525422,9525679-9528226                           28   6.2  
04_04_0061 + 22426874-22427241,22428106-22428298,22429726-22429731     28   8.2  

>03_01_0411 + 3168593-3168829,3169217-3170209
          Length = 409

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 10  GALFIHGVSVRAAVCYFYRFTNVDKFERIDLFI 108
           G +F H   V A +C ++R  +   F+R+DLF+
Sbjct: 337 GMVFAHSEDVEAVICSYFRHKD---FDRLDLFL 366


>01_02_0069 -
           10813467-10813475,10813476-10813564,10813865-10813988,
           10814227-10814305,10815298-10815388,10815808-10815904,
           10816197-10816241,10816369-10816464
          Length = 209

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 100 NQYVRTCRRS*TGKNNIQLLVPRPRV 23
           NQYVRT       KN +QL+ P PR+
Sbjct: 148 NQYVRTHLNQIAEKNGLQLVCPPPRL 173


>09_02_0456 - 9525067-9525422,9525679-9528226
          Length = 967

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 616  SGSKSRLKESVTNIYTSE-ANIKRVKRKCIRELPNNR 509
            +G++S L E +   +  E   + R+   C++ LPNNR
Sbjct: 900  NGAESVLDEKIAEHFKDEMCRVLRIALLCVKNLPNNR 936


>04_04_0061 + 22426874-22427241,22428106-22428298,22429726-22429731
          Length = 188

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -2

Query: 249 GGAAVVT*DLRTLYLKVDGAFTL*MSIGSSSQLTP 145
           GGAA VT  L  +++++   FT+ M+I ++S   P
Sbjct: 131 GGAATVTNSLTKIFVRLKTMFTIEMAIRATSAYEP 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,319,854
Number of Sequences: 37544
Number of extensions: 371188
Number of successful extensions: 602
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)