Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30156
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.4  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 194 PSTLRYKVLRSQVTTAAPPFN 256
           PS+  YK+ R +    A PFN
Sbjct: 494 PSSTLYKIARREGIRLAAPFN 514


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +1

Query: 502 GRICCWVIREC 534
           G  CCWV  +C
Sbjct: 463 GDTCCWVCDQC 473


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +3

Query: 459  LNTIQFYDTQPGAARPDLLLGNSRMHFLFTRFILASLVYMFVTDS 593
            L+ +Q  D      + +   GN ++H+  T  +  S   ++VT S
Sbjct: 1371 LSNLQSQDGGDYTCQVENAQGNDKLHYTLTVQVPPSAPVLYVTSS 1415


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +3

Query: 459  LNTIQFYDTQPGAARPDLLLGNSRMHFLFTRFILASLVYMFVTDS 593
            L+ +Q  D      + +   GN ++H+  T  +  S   ++VT S
Sbjct: 1367 LSNLQSQDGGDYTCQVENAQGNDKLHYTLTVQVPPSAPVLYVTSS 1411


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +1

Query: 502 GRICCWVIREC 534
           G  CCWV  +C
Sbjct: 553 GDTCCWVCDQC 563


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,685
Number of Sequences: 438
Number of extensions: 4405
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)