Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30156
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42620.1 68418.m05188 expressed protein                             29   3.9  
At5g08200.1 68418.m00959 peptidoglycan-binding LysM domain-conta...    28   6.8  
At5g64520.2 68418.m08107 DNA repair protein-related contains wea...    27   9.0  
At5g64520.1 68418.m08106 DNA repair protein-related contains wea...    27   9.0  
At5g59560.2 68418.m07464 sensitivity to red light reduced protei...    27   9.0  
At5g59560.1 68418.m07463 sensitivity to red light reduced protei...    27   9.0  

>At5g42620.1 68418.m05188 expressed protein
          Length = 841

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +2

Query: 173 DIYNVNAPSTLRYKVLRSQVTTAAPPFNRNALLLHGRNRQGGGTYPHRNRNS*IRLSKE 349
           DI +  AP  +  +V  S+    A    R   +  G   QG G Y HR RN+ + ++ E
Sbjct: 504 DINSARAPDRMLGEVRGSESRCMASSLVRTGFV-RGSMTQGNGCYQHRCRNNLLEVAVE 561


>At5g08200.1 68418.m00959 peptidoglycan-binding LysM
           domain-containing protein contains Pfam profile PF01476:
           LysM domain
          Length = 409

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 182 NVNAPSTLRYKVLRSQVTTAAPPFNRNALLLHGRNRQGGGTYPHR 316
           N    S  R K+LR    T++PP + ++   HG N    G   HR
Sbjct: 37  NCREKSPPRSKILRIPSPTSSPPPSSSSPPFHGSNSPDRGYIEHR 81


>At5g64520.2 68418.m08107 DNA repair protein-related contains weak
           similarity to DNA-repair protein XRCC2 (X-ray repair
           cross-complementing protein 2) (Swiss-Prot:O43543) [Homo
           sapiens]
          Length = 342

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 542 KEMHSRITQQQIRPSGARLRVIKLDSIQCLHYT 444
           K +H RI QQ+    G+++ V+ +DSI   H+T
Sbjct: 168 KTLHYRIQQQEA--CGSQVGVLMIDSIGAFHWT 198


>At5g64520.1 68418.m08106 DNA repair protein-related contains weak
           similarity to DNA-repair protein XRCC2 (X-ray repair
           cross-complementing protein 2) (Swiss-Prot:O43543) [Homo
           sapiens]
          Length = 372

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 542 KEMHSRITQQQIRPSGARLRVIKLDSIQCLHYT 444
           K +H RI QQ+    G+++ V+ +DSI   H+T
Sbjct: 168 KTLHYRIQQQEA--CGSQVGVLMIDSIGAFHWT 198


>At5g59560.2 68418.m07464 sensitivity to red light reduced protein
           (SRR1) identical to sensitivity to red light reduced
           protein [Arabidopsis thaliana] GI:25527089; supporting
           cDNA gi|25527088|gb|AY127047.1|
          Length = 275

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 443 MYNVDIEYYPIL*HAAWRRSAGSVVG*FANAFPFYTLYISFTCIYVC 583
           M + +   Y  L  A WR    S +  F N+F  Y   +SF    +C
Sbjct: 179 MPHCEANLYSNLLQANWRMDRLSKIALFGNSFQMYEEQVSFDAEVIC 225


>At5g59560.1 68418.m07463 sensitivity to red light reduced protein
           (SRR1) identical to sensitivity to red light reduced
           protein [Arabidopsis thaliana] GI:25527089; supporting
           cDNA gi|25527088|gb|AY127047.1|
          Length = 275

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 443 MYNVDIEYYPIL*HAAWRRSAGSVVG*FANAFPFYTLYISFTCIYVC 583
           M + +   Y  L  A WR    S +  F N+F  Y   +SF    +C
Sbjct: 179 MPHCEANLYSNLLQANWRMDRLSKIALFGNSFQMYEEQVSFDAEVIC 225


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,613,911
Number of Sequences: 28952
Number of extensions: 295923
Number of successful extensions: 447
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)