Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30150
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    57   1e-09
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    27   1.1  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   3.2  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    25   4.3  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   4.3  
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    25   4.3  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    25   7.4  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   7.4  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 57.2 bits (132), Expect = 1e-09
 Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
 Frame = +3

Query: 90  KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARD-KTKVAITADFLF 263
           K+ ID T    D I DV  FEKYL + +KV+GKT NL + VVV+R+  +K+A+ A   F
Sbjct: 11  KYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVSREGSSKIAVIAHIDF 69



 Score = 29.9 bits (64), Expect = 0.20
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 320 DWLRVVASAHDAYELRYF 373
           DWLRVV++    YELRY+
Sbjct: 89  DWLRVVSTKKGVYELRYY 106


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -3

Query: 275 GTSLK---KEVCGDSDFRLIPGDDNVIA*VICFALNFDVFLQVFLEVTY 138
           GTS+    + + G+S F ++P     +   IC  L   V +++F++ T+
Sbjct: 292 GTSINAPTRGLVGESSFAVLPNIPPALTFYICLGLQITVLIKLFIKPTW 340


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 90  KFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL 200
           K   DC +  + ++  + N +K + +HV  E K + L
Sbjct: 819 KLKTDCENLTQQNMTLIDNVQKLMHKHVNQESKVSEL 855


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 157 YFSKLPTSKILSSAGCVQSIVNFKLIFR-LMPLPRILPPFTPFL 29
           ++ +    ++    G +++I    ++F  L  L RI+ PFTPF+
Sbjct: 729 WYIRFNRRRLKGEDGEIETINALNVLFEVLFTLVRIMGPFTPFI 772


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 135  DVGNFEKYLKEHVKVEGKTNNLSNH 209
            + GN +KY + ++KV GK ++   H
Sbjct: 955  EAGNLKKYDQPNLKVSGKNDSFVTH 979


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 74  LDAFAADFATLHSFFASLLVQLGF 3
           +D +  DFAT H+ + + L  +GF
Sbjct: 87  IDLYILDFATQHNLYVASLRNMGF 110


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = -3

Query: 317  ANCSS*GNVLLNTSGTSLKKEVCGDSDFRLIPGDDNVIA*VICFALNFDVFLQVFLEVT 141
            +NC    N+ L+  GT+  +++   + +R    D N++A         D+F+++F E T
Sbjct: 1514 SNCICRDNITLSRIGTNCMQQLLSGNAYRFEVKDWNLVA---------DMFIELFKETT 1563


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +3

Query: 180 EGKTNNLSNHVVVARDKTKVAITADFLFQRGT*SI*QNVTSRRTICVTGFEWWPPLM 350
           EGK +N+ + V  ++D  + A   D L          N   R  +   G+ WWP L+
Sbjct: 24  EGKESNIPSVVEESKDNLEQASADDRL----------NFGDRILVKAPGYPWWPALL 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,531,806
Number of Sequences: 5004
Number of extensions: 25126
Number of successful extensions: 81
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)