Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30150
         (463 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal prote...    55   2e-08
Z22176-7|CAA80137.1|  910|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U58760-3|AAL02443.1|   53|Caenorhabditis elegans Ribosomal prote...    27   6.5  

>U58760-2|AAK31460.1|  130|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 22, isoform a protein.
          Length = 130

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 25/63 (39%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
 Frame = +3

Query: 84  NLKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNL-SNHVVVARDKTKVAITADFL 260
           +LKF ++C +P ED IL + + E +L E +KV GKT +L +N+V V   K+KV++ ++  
Sbjct: 20  HLKFNVECKNPVEDGILRIEDLEAFLNEKIKVNGKTGHLAANNVKVEVAKSKVSVVSEVP 79

Query: 261 FQR 269
           F +
Sbjct: 80  FSK 82



 Score = 30.3 bits (65), Expect = 0.70
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 320 DWLRVVASAHDAYELRYF 373
           DWLRVVA   + YE+RYF
Sbjct: 100 DWLRVVAVNKNTYEVRYF 117


>Z22176-7|CAA80137.1|  910|Caenorhabditis elegans Hypothetical
           protein ZK1098.8 protein.
          Length = 910

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 135 DVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADF 257
           DV +F KYLKE  +V G+      H++    K+  A+  D+
Sbjct: 692 DVSDFRKYLKEIERVGGEH---LRHIITVPSKSYEALKMDY 729


>U58760-3|AAL02443.1|   53|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 22, isoform b protein.
          Length = 53

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 84  NLKFTIDCTHPAEDSILDV 140
           +LKF ++C +P ED IL +
Sbjct: 20  HLKFNVECKNPVEDGILRI 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,570,169
Number of Sequences: 27780
Number of extensions: 146000
Number of successful extensions: 414
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)