Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30150
(463 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B) id... 66 1e-11
At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B) id... 66 1e-11
At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C) ribo... 65 3e-11
At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) simi... 56 9e-09
At3g56700.1 68416.m06307 male sterility protein, putative simila... 28 2.7
At5g12150.1 68418.m01426 pleckstrin homology (PH) domain-contain... 27 8.2
At3g62670.1 68416.m07040 two-component responsive regulator fami... 27 8.2
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran... 27 8.2
>At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B)
identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
[Arabidopsis thaliana]
Length = 124
Score = 65.7 bits (153), Expect = 1e-11
Identities = 25/61 (40%), Positives = 42/61 (68%)
Frame = +3
Query: 87 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADFLFQ 266
+ FTIDC+ P +D I+++ + EK+L+E +KV GK L + V + R+K+K+ +TAD F
Sbjct: 16 VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITREKSKITVTADGQFS 75
Query: 267 R 269
+
Sbjct: 76 K 76
Score = 28.7 bits (61), Expect = 2.0
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Frame = +2
Query: 320 DWLRVVASAHD--AYELRYF 373
DWLRV+A+ D YELRYF
Sbjct: 94 DWLRVIAANKDRNLYELRYF 113
>At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B)
identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
[Arabidopsis thaliana]
Length = 124
Score = 65.7 bits (153), Expect = 1e-11
Identities = 25/61 (40%), Positives = 42/61 (68%)
Frame = +3
Query: 87 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADFLFQ 266
+ FTIDC+ P +D I+++ + EK+L+E +KV GK L + V + R+K+K+ +TAD F
Sbjct: 16 VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITREKSKITVTADGQFS 75
Query: 267 R 269
+
Sbjct: 76 K 76
Score = 28.7 bits (61), Expect = 2.0
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Frame = +2
Query: 320 DWLRVVASAHD--AYELRYF 373
DWLRV+A+ D YELRYF
Sbjct: 94 DWLRVIAANKDRNLYELRYF 113
>At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C)
ribosomal protein L22 (cytosolic), Rattus norvegicus,
PIR:S52084
Length = 124
Score = 64.9 bits (151), Expect = 3e-11
Identities = 25/61 (40%), Positives = 42/61 (68%)
Frame = +3
Query: 87 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADFLFQ 266
+ FTIDC+ P +D I+++ + EK+L+E +KV GK L + V + R+K+K+ +TAD F
Sbjct: 16 VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVSITREKSKITVTADGQFS 75
Query: 267 R 269
+
Sbjct: 76 K 76
Score = 28.7 bits (61), Expect = 2.0
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Frame = +2
Query: 320 DWLRVVASAHD--AYELRYF 373
DWLRV+A+ D YELRYF
Sbjct: 94 DWLRVIAANKDRNLYELRYF 113
>At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) similar
to ribosomal protein L22 GI:710294 from [Rattus
norvegicus]
Length = 127
Score = 56.4 bits (130), Expect = 9e-09
Identities = 23/61 (37%), Positives = 37/61 (60%)
Frame = +3
Query: 87 LKFTIDCTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVVVARDKTKVAITADFLFQ 266
+ F IDC+ P +D+IL++ EK+L+E +KV GK L N V + R K+ + A+ F
Sbjct: 18 VSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVSITRYNGKINVNANSNFS 77
Query: 267 R 269
+
Sbjct: 78 K 78
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Frame = +2
Query: 320 DWLRVVASAHD--AYELRYF 373
DWLRV+AS D YE+RYF
Sbjct: 96 DWLRVIASNKDKNVYEVRYF 115
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +3
Query: 105 CTHPAEDSILDVGNFEKYLKEHVKVEGKTNNLSNHVV 215
C P E++++D+ +++K H +EG T+ LSN ++
Sbjct: 402 CDFPLEETVIDL----EHMKIHSSLEGFTSALSNTII 434
>At5g12150.1 68418.m01426 pleckstrin homology (PH) domain-containing
protein / RhoGAP domain-containing protein weak
similarity to glucocorticoid receptor DNA binding factor
1 [Canis familiaris] GI:23266717; contains Pfam profiles
PF00169: PH domain, PF00620: RhoGAP domain
Length = 827
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -1
Query: 391 AVSVDVEVAQFVSVMS-GGHHSKPVTQIVLLEVT 293
A S+ + + ++ VM G HH P T L+E+T
Sbjct: 754 AASLGIPMEEYSPVMDYGRHHHPPATSAALMELT 787
>At3g62670.1 68416.m07040 two-component responsive regulator family
protein / response regulator family protein contains
Pfam profile: PF00072 response regulator receiver domain
Length = 426
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 153 KYLKEHVKVEGKT-NNLSNHVVVARDKTKVAIT 248
KY++E + V+G T NN+++H+ R +K T
Sbjct: 244 KYMQEELNVQGLTRNNVASHLQKYRQSSKKTCT 276
>At3g60970.1 68416.m06823 ABC transporter family protein ABC
transporter-like proteins
Length = 1037
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -1
Query: 181 STLTCSFKYFSKLPTSKILSSAGCVQSIVNFKLIFRL 71
S YF PT +IL+ A QS+++ ++ +L
Sbjct: 563 SIFRAPMSYFDSTPTGRILNRASTDQSVLDLEMAVKL 599
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,997,807
Number of Sequences: 28952
Number of extensions: 133965
Number of successful extensions: 405
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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