Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30147
         (392 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2; ...    58   8e-08
UniRef50_Q2JAB7 Cluster: SNF2-related; n=1; Frankia sp. CcI3|Rep...    34   1.1  
UniRef50_UPI0001509B73 Cluster: ankyrin repeat; n=1; Tetrahymena...    33   2.0  
UniRef50_Q0UVC6 Cluster: Putative uncharacterized protein; n=1; ...    33   2.0  
UniRef50_A2W588 Cluster: Spermidine/putrescine-binding periplasm...    33   2.6  
UniRef50_Q2IGD4 Cluster: UvrD/REP helicase; n=1; Anaeromyxobacte...    32   3.4  
UniRef50_A4J380 Cluster: YD repeat protein; n=1; Desulfotomaculu...    32   3.4  
UniRef50_Q7SXN4 Cluster: Cytoplasmic polyadenylation element-bin...    31   6.0  

>UniRef50_Q5MGF5 Cluster: Putative uncharacterized protein; n=2;
           Bombycoidea|Rep: Putative uncharacterized protein -
           Lonomia obliqua (Moth)
          Length = 74

 Score = 57.6 bits (133), Expect = 8e-08
 Identities = 30/63 (47%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
 Frame = +2

Query: 68  MGFFTALIVNIVGGASLC-MGGFLIPIVAPLLGFXXXXXXXXXXXXXXXXYYGNLMAGSI 244
           MG   AL VN+VGGA +   GG L PIVAP+LGF                YYGN++AGS+
Sbjct: 1   MGLLAALAVNLVGGAIIYGTGGLLTPIVAPMLGFGSAGIAAGSTAAAAQAYYGNVVAGSV 60

Query: 245 ISK 253
           IS+
Sbjct: 61  ISQ 63


>UniRef50_Q2JAB7 Cluster: SNF2-related; n=1; Frankia sp. CcI3|Rep:
           SNF2-related - Frankia sp. (strain CcI3)
          Length = 1163

 Score = 33.9 bits (74), Expect = 1.1
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = -3

Query: 285 WSWCYHGGGSHFDIMLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQRDA 109
           W W Y  GG    + L A + P     +  MLPA  P A +P      G+++P  ++DA
Sbjct: 444 WGWAYEVGGERIHVPLYATE-PDGTEPDGTMLPAATPPAAEPD-----GLRDPRQEQDA 496


>UniRef50_UPI0001509B73 Cluster: ankyrin repeat; n=1; Tetrahymena
            thermophila SB210|Rep: ankyrin repeat - Tetrahymena
            thermophila SB210
          Length = 1913

 Score = 33.1 bits (72), Expect = 2.0
 Identities = 22/88 (25%), Positives = 42/88 (47%)
 Frame = -2

Query: 361  IYFRI*DILNPECIDEQQLSVFDKLMELVLSWRRQSL*YNASGH*IPVIRLG*SCNASRH 182
            IYF + DIL  +C++ + L ++ +     L + +++L  + S   + VI    S    ++
Sbjct: 1313 IYFCVSDILGSQCVNSENLDIYQQNFRSNLLFIQKNLPADISHQYVTVII---SDQLMQN 1369

Query: 181  YSRCAEAEQRCHDWDQKPSHAKRRSAYD 98
                   + R   W+QKPS  + R  +D
Sbjct: 1370 EKNKLIYQIRWQSWEQKPSDQQLRCPFD 1397


>UniRef50_Q0UVC6 Cluster: Putative uncharacterized protein; n=1;
           Phaeosphaeria nodorum|Rep: Putative uncharacterized
           protein - Phaeosphaeria nodorum (Septoria nodorum)
          Length = 887

 Score = 33.1 bits (72), Expect = 2.0
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -3

Query: 162 PSRGATIGIKNP-PMQRDAPPTMLTIRAV-KNPMILKSQ*LLT 40
           PS GA    ++P P    AP    T+R V KNP +LKS  LLT
Sbjct: 739 PSNGAAFAPRSPSPSPAPAPSLTATVRFVSKNPTLLKSSYLLT 781


>UniRef50_A2W588 Cluster: Spermidine/putrescine-binding periplasmic
           protein; n=5; Burkholderia|Rep:
           Spermidine/putrescine-binding periplasmic protein -
           Burkholderia cenocepacia PC184
          Length = 494

 Score = 32.7 bits (71), Expect = 2.6
 Identities = 16/30 (53%), Positives = 17/30 (56%)
 Frame = -2

Query: 187 RHYSRCAEAEQRCHDWDQKPSHAKRRSAYD 98
           R  SR A   QR HD  Q P HA RR+A D
Sbjct: 65  RSSSRAAATRQRRHDGRQGPQHAPRRAAAD 94


>UniRef50_Q2IGD4 Cluster: UvrD/REP helicase; n=1; Anaeromyxobacter
           dehalogenans 2CP-C|Rep: UvrD/REP helicase -
           Anaeromyxobacter dehalogenans (strain 2CP-C)
          Length = 1111

 Score = 32.3 bits (70), Expect = 3.4
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 130 VFDPNRGTSARLQRI-GNNGGKHCSFSPVVLREFNGRKHYIKVTAAAMIA 276
           VFDP  GT A    + G +GG  C+   + L   +GRK  ++ T A  +A
Sbjct: 494 VFDPGAGTVANEPLLAGRDGGAPCAVQVLPLAAESGRKPELRATEAKALA 543


>UniRef50_A4J380 Cluster: YD repeat protein; n=1; Desulfotomaculum
            reducens MI-1|Rep: YD repeat protein - Desulfotomaculum
            reducens MI-1
          Length = 2558

 Score = 32.3 bits (70), Expect = 3.4
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 65   IMGFFTALIVNIVGGASLCMGGFLIPIVAPLLG 163
            + G  TAL V ++GGA++  G +  P+VA L G
Sbjct: 2255 LYGGLTALAVGLIGGAAVGTGDYASPVVAALAG 2287


>UniRef50_Q7SXN4 Cluster: Cytoplasmic polyadenylation
           element-binding protein 4; n=20; Euteleostomi|Rep:
           Cytoplasmic polyadenylation element-binding protein 4 -
           Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 635

 Score = 31.5 bits (68), Expect = 6.0
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +1

Query: 67  HGIFHCPNSQHRRRSVSLHGRVFDPNRGTSARLQRIGNNGGK 192
           H  F  P++QHRR S S H   F        +L  +GNN  K
Sbjct: 169 HPHFQHPHNQHRRSSASPHPPPFSHRSAAFNQLPHLGNNLSK 210


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 405,889,093
Number of Sequences: 1657284
Number of extensions: 8148131
Number of successful extensions: 18512
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18508
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16080341554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)