Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30147
(392 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 26 1.8
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo... 26 2.4
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 24 7.3
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 24 7.3
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 24 7.3
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 24 7.3
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 24 7.3
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 24 7.3
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 24 7.3
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 24 7.3
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 24 7.3
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 24 7.3
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 24 7.3
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 24 7.3
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 24 7.3
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 24 9.7
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 24 9.7
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 24 9.7
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 26.2 bits (55), Expect = 1.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 73 IFHCPNSQHRRRSVSLHGRVFD 138
+FHC +S HR ++LH R D
Sbjct: 477 VFHCEHSAHRAPHLALHFRNTD 498
>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 437
Score = 25.8 bits (54), Expect = 2.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 148 HDWDQKPSHAKRRSAYDVDY*GSEK 74
HD ++PSH K SA +D S K
Sbjct: 229 HDHGERPSHVKDASAQHIDLLSSTK 253
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 7.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 190 KHCSFSPVVLREFNGRKHYIKVTAAAMIAPTP*VCQK 300
K C SP VLR F+ K + T A+ +A + QK
Sbjct: 690 KQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQK 726
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 7.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 190 KHCSFSPVVLREFNGRKHYIKVTAAAMIAPTP*VCQK 300
K C SP VLR F+ K + T A+ +A + QK
Sbjct: 690 KQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQK 726
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 7.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 190 KHCSFSPVVLREFNGRKHYIKVTAAAMIAPTP*VCQK 300
K C SP VLR F+ K + T A+ +A + QK
Sbjct: 690 KQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQK 726
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 7.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 190 KHCSFSPVVLREFNGRKHYIKVTAAAMIAPTP*VCQK 300
K C SP VLR F+ K + T A+ +A + QK
Sbjct: 690 KQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQK 726
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 24.2 bits (50), Expect = 7.3
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -3
Query: 276 CYHGGGSHFD 247
CY+ GGSH+D
Sbjct: 235 CYYDGGSHYD 244
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 7.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 190 KHCSFSPVVLREFNGRKHYIKVTAAAMIAPTP*VCQK 300
K C SP VLR F+ K + T A+ +A + QK
Sbjct: 690 KQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQK 726
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 7.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 190 KHCSFSPVVLREFNGRKHYIKVTAAAMIAPTP*VCQK 300
K C SP VLR F+ K + T A+ +A + QK
Sbjct: 690 KQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQK 726
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 625
Score = 24.2 bits (50), Expect = 7.3
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -3
Query: 87 RAVKNPMILKSQ*LLT 40
RAVKNPMIL+ + LT
Sbjct: 12 RAVKNPMILEKERQLT 27
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 7.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 190 KHCSFSPVVLREFNGRKHYIKVTAAAMIAPTP*VCQK 300
K C SP VLR F+ K + T A+ +A + QK
Sbjct: 690 KQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQK 726
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 7.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 190 KHCSFSPVVLREFNGRKHYIKVTAAAMIAPTP*VCQK 300
K C SP VLR F+ K + T A+ +A + QK
Sbjct: 690 KQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQK 726
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 7.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 190 KHCSFSPVVLREFNGRKHYIKVTAAAMIAPTP*VCQK 300
K C SP VLR F+ K + T A+ +A + QK
Sbjct: 690 KQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQK 726
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 7.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 190 KHCSFSPVVLREFNGRKHYIKVTAAAMIAPTP*VCQK 300
K C SP VLR F+ K + T A+ +A + QK
Sbjct: 690 KQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQK 726
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.2 bits (50), Expect = 7.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 190 KHCSFSPVVLREFNGRKHYIKVTAAAMIAPTP*VCQK 300
K C SP VLR F+ K + T A+ +A + QK
Sbjct: 690 KQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQK 726
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 23.8 bits (49), Expect = 9.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 190 SRHYSRCAEAEQRCHDWDQKPSHAKRRSAYDVDY*GSEK 74
SR A AE++ ++ AKR +YD +Y +E+
Sbjct: 30 SREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAER 68
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 23.8 bits (49), Expect = 9.7
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +1
Query: 196 CSFSPVVLREFNGRKHYIKVTAAAMIAPT 282
C+FSP+++ + N + T +A PT
Sbjct: 165 CTFSPIMIGKGNFTSTTVTTTTSATATPT 193
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 23.8 bits (49), Expect = 9.7
Identities = 8/30 (26%), Positives = 14/30 (46%)
Frame = +3
Query: 234 PEALYQSDCRRHDSTNSISLSKTDNCCSSI 323
P LY+ C R + ++ + N C+ I
Sbjct: 403 PFMLYKDSCNRKSNQKNVGTIRCSNLCTEI 432
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,679,482
Number of Sequences: 5004
Number of extensions: 33936
Number of successful extensions: 69
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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