Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30147
         (392 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0583 + 4636832-4637521                                           31   0.25 
11_01_0577 - 4611820-4612509                                           29   1.3  
10_07_0162 - 13713504-13714754,13716445-13716522                       27   4.1  
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335...    27   4.1  
04_03_0314 - 14238620-14240128                                         26   9.4  

>11_01_0583 + 4636832-4637521
          Length = 229

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = -3

Query: 282 SWCYHGGGSHFDIMLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQRDAPP 103
           S C  G  S  +++L A KF  Y W+   ++ A++P+ L  +  AT  + +P +   A P
Sbjct: 170 SGCLDGSSSEGEVLL-ATKFN-YIWSLLDLMEAVLPEYLSETGTATTTVPSPDVAAAAAP 227


>11_01_0577 - 4611820-4612509
          Length = 229

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = -3

Query: 282 SWCYHGGGSHFDIMLPAIKFP*YDWAEAAMLPAIIPDALKPSRGATIGIKNPPMQRDAPP 103
           S C  G  S  + +L A KF  Y W+   ++ A++P+ L  +  AT  + +P +   A P
Sbjct: 170 SGCLDGSSSEGEALL-ATKFN-YIWSLLDLMKAVLPEYLSETGTATTTVPSPYVAAAAAP 227


>10_07_0162 - 13713504-13714754,13716445-13716522
          Length = 442

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 127 RVFDPNRGTSARLQRIGNNGGKHCSFSPVVLREFNGR 237
           RV+DPN GT A+     ++ G   +F    L   NG+
Sbjct: 339 RVYDPNTGTWAKFMDSKHHLGSSRAFEAAALVTLNGK 375


>02_01_0469 -
           3359156-3359500,3359595-3359680,3359766-3359811,
           3359897-3360016,3360622-3360624
          Length = 199

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 5   KDYQVLICIVYLVRSYCDLRIMGFFTALIVNIV 103
           KD +++IC +Y V S C   IM   +  IV IV
Sbjct: 139 KDIEIVICFIYAVDSVCSRLIMLQSSLDIVMIV 171


>04_03_0314 - 14238620-14240128
          Length = 502

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = -3

Query: 207 AEAAMLPAIIPDALKPSRGATIGIKNPPMQRDAPPTMLTIRAVKNP 70
           + ++ L  + P  + P R   + + NPP    APPT   +R    P
Sbjct: 6   SSSSSLSFLSPQPIHPRR---VRLPNPPPSTAAPPTPTAVRCTPAP 48


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,354,699
Number of Sequences: 37544
Number of extensions: 244708
Number of successful extensions: 557
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)